Shu Tadaka

TL;DR: The latest coexpression data for Arabidopsis showed the highest reproducibility and the statistical basis of the mutual rank (MR) index as a coexpression measure was investigated by bootstrap sampling of experimental units, finding that the error distribution of the logit-transformed MR index showed normality with equal variances for each coexpression platform.

TL;DR: Monocot- and dicot-specific coexpression of cell wall genes are demonstrated in ATTED-II, a coexpression database for plant species with parallel views of multiple coexpression data sets and network analysis tools that provides new opportunities to investigate lineage-specific evolution in plants.

TL;DR: The COXPRESdb as mentioned in this paper database provides gene coexpression relationships for animal species, including RNAseq-based gene co-expression data for three species (human, mouse and fly), and largely increased the number of microarray experiments to nine species.

TL;DR: Using various functionalities in COXPRESdb, the new coexpression data would support a broader area of research from molecular biology to medical sciences, including 23 coexpression platforms with the highest-level quality till date.

TL;DR: An updated version of ATTED-II is described, which expands this resource to include additional agriculturally important plants and includes more gene expression data from microarray and RNA sequencing studies.