Stephen J. Preece

Bio: Stephen J. Preece is an academic researcher from University of Salford. The author has contributed to research in topics: Osteoarthritis & Gait (human). The author has an hindex of 19, co-authored 72 publications receiving 2329 citations. Previous affiliations of Stephen J. Preece include University of Birmingham & The Mount.

Large Scale Population Assessment of Physical Activity Using Wrist Worn Accelerometers: The UK Biobank Study.

Abstract: BACKGROUND: Physical activity has not been objectively measured in prospective cohorts with sufficiently large numbers to reliably detect associations with multiple health outcomes. Technological advances now make this possible. We describe the methods used to collect and analyse accelerometer measured physical activity in over 100,000 participants of the UK Biobank study, and report variation by age, sex, day, time of day, and season. METHODS: Participants were approached by email to wear a wrist-worn accelerometer for seven days that was posted to them. Physical activity information was extracted from 100Hz raw triaxial acceleration data after calibration, removal of gravity and sensor noise, and identification of wear / non-wear episodes. We report age- and sex-specific wear-time compliance and accelerometer measured physical activity, overall and by hour-of-day, week-weekend day and season. RESULTS: 103,712 datasets were received (44.8% response), with a median wear-time of 6.9 days (IQR:6.5-7.0). 96,600 participants (93.3%) provided valid data for physical activity analyses. Vector magnitude, a proxy for overall physical activity, was 7.5% (2.35mg) lower per decade of age (Cohen's d = 0.9). Women had a higher vector magnitude than men, apart from those aged 45-54yrs. There were major differences in vector magnitude by time of day (d = 0.66). Vector magnitude differences between week and weekend days (d = 0.12 for men, d = 0.09 for women) and between seasons (d = 0.27 for men, d = 0.15 for women) were small. CONCLUSIONS: It is feasible to collect and analyse objective physical activity data in large studies. The summary measure of overall physical activity is lower in older participants and age-related differences in activity are most prominent in the afternoon and evening. This work lays the foundation for studies of physical activity and its health consequences. Our summary variables are part of the UK Biobank dataset and can be used by researchers as exposures, confounding factors or outcome variables in future analyses.

Activity identification using body-mounted sensors — a review of classification techniques

Abstract: With the advent of miniaturized sensing technology, which can be body-worn, it is now possible to collect and store data on different aspects of human movement under the conditions of free living. This technology has the potential to be used in automated activity profiling systems which produce a continuous record of activity patterns over extended periods of time. Such activity profiling systems are dependent on classification algorithms which can effectively interpret body-worn sensor data and identify different activities. This article reviews the different techniques which have been used to classify normal activities and/or identify falls from body-worn sensor data. The review is structured according to the different analytical techniques and illustrates the variety of approaches which have previously been applied in this field. Although significant progress has been made in this important area, there is still significant scope for further work, particularly in the application of advanced classification techniques to problems involving many different activities.

A Comparison of Feature Extraction Methods for the Classification of Dynamic Activities From Accelerometer Data

Abstract: Driven by the demands on healthcare resulting from the shift toward more sedentary lifestyles, considerable effort has been devoted to the monitoring and classification of human activity. In previous studies, various classification schemes and feature extraction methods have been used to identify different activities from a range of different datasets. In this paper, we present a comparison of 14 methods to extract classification features from accelerometer signals. These are based on the wavelet transform and other well-known time- and frequency-domain signal characteristics. To allow an objective comparison between the different features, we used two datasets of activities collected from 20 subjects. The first set comprised three commonly used activities, namely, level walking, stair ascent, and stair descent, and the second a total of eight activities. Furthermore, we compared the classification accuracy for each feature set across different combinations of three different accelerometer placements. The classification analysis has been performed with robust subject-based cross-validation methods using a nearest-neighbor classifier. The findings show that, although the wavelet transform approach can be used to characterize nonstationary signals, it does not perform as accurately as frequency-based features when classifying dynamic activities performed by healthy subjects. Overall, the best feature sets achieved over 95% intersubject classification accuracy.

Monte Carlo modelling of the spectral reflectance of the human eye.

Abstract: The interpretation of in vivo spectral reflectance measurements of the ocular fundus requires an accurate model of radiation transport within the eye. As well as considering the scattering and absorption processes, it is also necessary to account for appropriate histological variation. This variation results in experimentally measured spectra which vary, both with position in the eye, and between individuals. In this paper the results of a Monte Carlo simulation are presented. Three histological variables are considered: the RPE melanin concentration, the choriodal haemoglobin concentration and the choroidal melanin concentration. By considering these three variables, it is possible to generate model spectra which agree well with in vivo experimental measurements of the nasal fundus. The model has implications for the problem of extracting histological parameters from spectral reflectance measurements. These implications are discussed and a novel approach to interpretation of images of the ocular fundus suggested.

Is There a Pathological Gait Associated With Common Soft Tissue Running Injuries

Abstract: Background:Previous research has demonstrated clear associations between specific running injuries and patterns of lower limb kinematics. However, there has been minimal research investigating whet...

The UK Biobank resource with deep phenotyping and genomic data

Abstract: The UK Biobank project is a prospective cohort study with deep genetic and phenotypic data collected on approximately 500,000 individuals from across the United Kingdom, aged between 40 and 69 at recruitment. The open resource is unique in its size and scope. A rich variety of phenotypic and health-related information is available on each participant, including biological measurements, lifestyle indicators, biomarkers in blood and urine, and imaging of the body and brain. Follow-up information is provided by linking health and medical records. Genome-wide genotype data have been collected on all participants, providing many opportunities for the discovery of new genetic associations and the genetic bases of complex traits. Here we describe the centralized analysis of the genetic data, including genotype quality, properties of population structure and relatedness of the genetic data, and efficient phasing and genotype imputation that increases the number of testable variants to around 96 million. Classical allelic variation at 11 human leukocyte antigen genes was imputed, resulting in the recovery of signals with known associations between human leukocyte antigen alleles and many diseases.

How accurately can sitting and the intensity of walking and cycling be classified using an accelerometer on the waist for the purpose of the “Global recommendations on physical activity for health”?

Abstract: The society has become more sedentary and has developed a lack of physical activity, therefore increasing health risks. Feedback is needed to change these behaviours. For this feedback, first accurate monitoring is needed: sedentary behaviour must be classified as well as the intensity of physical activity. In this report a State of the Art analysis is performed to compare different classification techniques and finally two methods, both using an accelerometer on the waist, are worked out. These methods are Integral of the Modulus of the Accelerometer (IMA) classification and a machine learning technique (MLT): support vector machine (SVM). These methods are then applied in a laboratory experiment to study their quality. A measurement setup is made to create a dataset of the following activities: standing, sitting, lying, walking (2.4 - 7.5 km/h) and cycling (10.1-19 km/h). This dataset (n=15) is analysed and classified using Matlab for both methods. The IMA method was unable to monitor sedentary behaviour, but could classify the physical activity (PA) intensity with an accuracy of 66%. The SVM method within subjects was able to monitor sedentary behaviour with an accuracy of 91±20% and the classification of the PA intensity has an accuracy of 94±5%. For between subjects the accuracies decrease to 71±13% for PA intensity accuracy and 45±35% for the sedentary behaviour classification. IMA was implemented in the old feedback system, monitoring the overall daily amount of physical activity, but can significantly be outperformed by replacing it with the current SVM implementation. At this moment however, SVM can only be used to improve the old system, it cannot yet be used to create new additions to the feedback system, such as the implementation of the feedback of the sedentary behaviour and specific physical activity intensities. New methods and properties of the current SVM system have been found that might increase the accuracies of the between subject analysis and therefore might enable SVM to become applicable for the extra feedback options.

Deep Convolutional and LSTM Recurrent Neural Networks for Multimodal Wearable Activity Recognition

Abstract: Human activity recognition (HAR) tasks have traditionally been solved using engineered features obtained by heuristic processes. Current research suggests that deep convolutional neural networks are suited to automate feature extraction from raw sensor inputs. However, human activities are made of complex sequences of motor movements, and capturing this temporal dynamics is fundamental for successful HAR. Based on the recent success of recurrent neural networks for time series domains, we propose a generic deep framework for activity recognition based on convolutional and LSTM recurrent units, which: (i) is suitable for multimodal wearable sensors; (ii) can perform sensor fusion naturally; (iii) does not require expert knowledge in designing features; and (iv) explicitly models the temporal dynamics of feature activations. We evaluate our framework on two datasets, one of which has been used in a public activity recognition challenge. Our results show that our framework outperforms competing deep non-recurrent networks on the challenge dataset by 4% on average; outperforming some of the previous reported results by up to 9%. Our results show that the framework can be applied to homogeneous sensor modalities, but can also fuse multimodal sensors to improve performance. We characterise key architectural hyperparameters’ influence on performance to provide insights about their optimisation.

A Survey on Ambient-Assisted Living Tools for Older Adults

Abstract: In recent years, we have witnessed a rapid surge in assisted living technologies due to a rapidly aging society. The aging population, the increasing cost of formal health care, the caregiver burden, and the importance that the individuals place on living independently, all motivate development of innovative-assisted living technologies for safe and independent aging. In this survey, we will summarize the emergence of `ambient-assisted living” (AAL) tools for older adults based on ambient intelligence paradigm. We will summarize the state-of-the-art AAL technologies, tools, and techniques, and we will look at current and future challenges.