Stephen R. Carpenter

Bio: Stephen R. Carpenter is an academic researcher from University of Wisconsin-Madison. The author has contributed to research in topics: Zooplankton & Ecosystem. The author has an hindex of 131, co-authored 464 publications receiving 109624 citations. Previous affiliations of Stephen R. Carpenter include Royal Swedish Academy of Sciences & University of California, Santa Barbara.

Global Consequences of Land Use

Abstract: Land use has generally been considered a local environmental issue, but it is becoming a force of global importance. Worldwide changes to forests, farmlands, waterways, and air are being driven by the need to provide food, fiber, water, and shelter to more than six billion people. Global croplands, pastures, plantations, and urban areas have expanded in recent decades, accompanied by large increases in energy, water, and fertilizer consumption, along with considerable losses of biodiversity. Such changes in land use have enabled humans to appropriate an increasing share of the planet’s resources, but they also potentially undermine the capacity of ecosystems to sustain food production, maintain freshwater and forest resources, regulate climate and air quality, and ameliorate infectious diseases. We face the challenge of managing trade-offs between immediate human needs and maintaining the capacity of the biosphere to provide goods and services in the long term.

Planetary boundaries: Guiding human development on a changing planet

Abstract: The planetary boundaries framework defines a safe operating space for humanity based on the intrinsic biophysical processes that regulate the stability of the Earth system. Here, we revise and update the planetary boundary framework, with a focus on the underpinning biophysical science, based on targeted input from expert research communities and on more general scientific advances over the past 5 years. Several of the boundaries now have a two-tier approach, reflecting the importance of cross-scale interactions and the regional-level heterogeneity of the processes that underpin the boundaries. Two core boundaries—climate change and biosphere integrity—have been identified, each of which has the potential on its own to drive the Earth system into a new state should they be substantially and persistently transgressed.

Solutions for a cultivated planet

Abstract: Increasing population and consumption are placing unprecedented demands on agriculture and natural resources. Today, approximately a billion people are chronically malnourished while our agricultural systems are concurrently degrading land, water, biodiversity and climate on a global scale. To meet the world's future food security and sustainability needs, food production must grow substantially while, at the same time, agriculture's environmental footprint must shrink dramatically. Here we analyse solutions to this dilemma, showing that tremendous progress could be made by halting agricultural expansion, closing 'yield gaps' on underperforming lands, increasing cropping efficiency, shifting diets and reducing waste. Together, these strategies could double food production while greatly reducing the environmental impacts of agriculture.

Resilience, Adaptability and Transformability in Social–ecological Systems

Abstract: The concept of resilience has evolved considerably since Holling’s (1973) seminal paper. Different interpretations of what is meant by resilience, however, cause confusion. Resilience of a system needs to be considered in terms of the attributes that govern the system’s dynamics. Three related attributes of social– ecological systems (SESs) determine their future trajectories: resilience, adaptability, and transformability. Resilience (the capacity of a system to absorb disturbance and reorganize while undergoing change so as to still retain essentially the same function, structure, identity, and feedbacks) has four components—latitude, resistance, precariousness, and panarchy—most readily portrayed using the metaphor of a stability landscape. Adaptability is the capacity of actors in the system to influence resilience (in a SES, essentially to manage it). There are four general ways in which this can be done, corresponding to the four aspects of resilience. Transformability is the capacity to create a fundamentally new system when ecological, economic, or social structures make the existing system untenable. The implications of this interpretation of SES dynamics for sustainability science include changing the focus from seeking optimal states and the determinants of maximum sustainable yield (the MSY paradigm), to resilience analysis, adaptive resource management, and adaptive governance. INTRODUCTION An inherent difficulty in the application of these concepts is that, by their nature, they are rather imprecise. They fall into the same sort of category as “justice” or “wellbeing,” and it can be counterproductive to seek definitions that are too narrow. Because different groups adopt different interpretations to fit their understanding and purpose, however, there is confusion in their use. The confusion then extends to how a resilience approach (Holling 1973, Gunderson and Holling 2002) can contribute to the goals of sustainable development. In what follows, we provide an interpretation and an explanation of how these concepts are reflected in the adaptive cycles of complex, multi-scalar SESs. We need a better scientific basis for sustainable development than is generally applied (e.g., a new “sustainability science”). The “Consortium for Sustainable Development” (of the International Council for Science, the Initiative on Science and Technology for Sustainability, and the Third World Academy of Science), the US National Research Council (1999, 2002), and the Millennium Ecosystem Assessment (2003), have all focused increasing attention on such notions as robustness, vulnerability, and risk. There is good reason for this, as it is these characteristics of social–ecological systems (SESs) that will determine their ability to adapt to and benefit from change. In particular, the stability dynamics of all linked systems of humans and nature emerge from three complementary attributes: resilience, adaptability, and transformability. The purpose of this paper is to examine these three attributes; what they mean, how they interact, and their implications for our future well-being. There is little fundamentally new theory in this paper. What is new is that it uses established theory of nonlinear stability (Levin 1999, Scheffer et al. 2001, Gunderson and Holling 2002, Berkes et al. 2003) to clarify, explain, and diagnose known examples of regional development, regional poverty, and regional CSIRO Sustainable Ecosystems; University of Wisconsin-Madison; Arizona State University Ecology and Society 9(2): 5. http://www.ecologyandsociety.org/vol9/iss2/art5 sustainability. These include, among others, the Everglades and the Wisconsin Northern Highlands Lake District in the USA, rangelands and an agricultural catchment in southeastern Australia, the semi-arid savanna in southeastern Zimbabwe, the Kristianstad “Water Kingdom” in southern Sweden, and the Mae Ping valley in northern Thailand. These regions provide examples of both successes and failures of development. Some from rich countries have generated several pulses of solutions over a span of a hundred years and have generated huge costs of recovery (the Everglades). Some from poor countries have emerged in a transformed way but then, in some cases, have been dragged back by higher-level autocratic regimes (Zimbabwe). Some began as localscale solutions and then developed as transformations across scales from local to regional (Kristianstad and northern Wisconsin). In all of them, the outcomes were determined by the interplay of their resilience, adaptability, and transformability. There is a major distinction between resilience and adaptability, on the one hand, and transformability on the other. Resilience and adaptability have to do with the dynamics of a particular system, or a closely related set of systems. Transformability refers to fundamentally altering the nature of a system. As with many terms under the resilience rubric, the dividing line between “closely related” and “fundamentally altered” can be fuzzy, and subject to interpretation. So we begin by first offering the most general, qualitative set of definitions, without reference to conceptual frameworks, that can be used to describe these terms. We then use some examples and the literature on “basins of attraction” and “stability landscapes” to further refine our definitions. Before giving the definitions, however, we need to briefly introduce the concept of adaptive cycles. Adaptive Cycles and Cross-scale Effects The dynamics of SESs can be usefully described and analyzed in terms of a cycle, known as an adaptive cycle, that passes through four phases. Two of them— a growth and exploitation phase (r) merging into a conservation phase (K)—comprise a slow, cumulative forward loop of the cycle, during which the dynamics of the system are reasonably predictable. As the K phase continues, resources become increasingly locked up and the system becomes progressively less flexible and responsive to external shocks. It is eventually, inevitably, followed by a chaotic collapse and release phase (Ω) that rapidly gives way to a phase of reorganization (α), which may be rapid or slow, and during which, innovation and new opportunities are possible. The Ω and α phases together comprise an unpredictable backloop. The α phase leads into a subsequent r phase, which may resemble the previous r phase or be significantly different. This metaphor of the adaptive cycle is based on observed system changes, and does not imply fixed, regular cycling. Systems can move back from K toward r, or from r directly into Ω, or back from α to Ω. Finally (and importantly), the cycles occur at a number of scales and SESs exist as “panarchies”— adaptive cycles interacting across multiple scales. These cross-scale effects are of great significance in the dynamics of SESs.

Nonpoint pollution of surface waters with phosphorus and nitrogen

Abstract: Agriculture and urban activities are major sources of phosphorus and nitrogen to aquatic ecosystems. Atmospheric deposition further contributes as a source of N. These nonpoint inputs of nutrients are difficult to measure and regulate because they derive from activities dispersed over wide areas of land and are variable in time due to effects of weather. In aquatic ecosystems, these nutrients cause diverse problems such as toxic algal blooms, loss of oxygen, fish kills, loss of biodiversity (including species important for commerce and recreation), loss of aquatic plant beds and coral reefs, and other problems. Nutrient enrichment seriously degrades aquatic ecosystems and impairs the use of water for drinking, industry, agriculture, recreation, and other purposes. Based on our review of the scientific literature, we are certain that (1) eutrophication is a widespread problem in rivers, lakes, estuaries, and coastal oceans, caused by overenrichment with P and N; (2) nonpoint pollution, a major source of P and N to surface waters of the United States, results primarily from agriculture and urban activity, including industry; (3) inputs of P and N to agriculture in the form of fertilizers exceed outputs in produce in the United States and many other nations; (4) nutrient flows to aquatic ecosystems are directly related to animal stocking densities, and under high livestock densities, manure production exceeds the needs of crops to which the manure is applied; (5) excess fertilization and manure production cause a P surplus to accumulate in soil, some of which is transported to aquatic ecosystems; and (6) excess fertilization and manure production on agricultural lands create surplus N, which is mobile in many soils and often leaches to downstream aquatic ecosystems, and which can also volatilize to the atmosphere, redepositing elsewhere and eventually reaching aquatic ecosystems. If current practices continue, nonpoint pollution of surface waters is virtually certain to increase in the future. Such an outcome is not inevitable, however, because a number of technologies, land use practices, and conservation measures are capable of decreasing the flow of nonpoint P and N into surface waters. From our review of the available scientific information, we are confident that: (1) nonpoint pollution of surface waters with P and N could be reduced by reducing surplus nutrient flows in agricultural systems and processes, reducing agricultural and urban runoff by diverse methods, and reducing N emissions from fossil fuel burning; and (2) eutrophication can be reversed by decreasing input rates of P and N to aquatic ecosystems, but rates of recovery are highly variable among water bodies. Often, the eutrophic state is persistent, and recovery is slow.

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

The Theory of Island Biogeography

Abstract: Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

A new method for non-parametric multivariate analysis of variance

Abstract: Hypothesis-testing methods for multivariate data are needed to make rigorous probability statements about the effects of factors and their interactions in experiments. Analysis of variance is particularly powerful for the analysis of univariate data. The traditional multivariate analogues, however, are too stringent in their assumptions for most ecological multivariate data sets. Non-parametric methods, based on permutation tests, are preferable. This paper describes a new non-parametric method for multivariate analysis of variance, after McArdle and Anderson (in press). It is given here, with several applications in ecology, to provide an alternative and perhaps more intuitive formulation for ANOVA (based on sums of squared distances) to complement the description pro- vided by McArdle and Anderson (in press) for the analysis of any linear model. It is an improvement on previous non-parametric methods because it allows a direct additive partitioning of variation for complex models. It does this while maintaining the flexibility and lack of formal assumptions of other non-parametric methods. The test- statistic is a multivariate analogue to Fisher's F-ratio and is calculated directly from any symmetric distance or dissimilarity matrix. P-values are then obtained using permutations. Some examples of the method are given for tests involving several factors, including factorial and hierarchical (nested) designs and tests of interactions.

Global Consequences of Land Use

Abstract: Land use has generally been considered a local environmental issue, but it is becoming a force of global importance. Worldwide changes to forests, farmlands, waterways, and air are being driven by the need to provide food, fiber, water, and shelter to more than six billion people. Global croplands, pastures, plantations, and urban areas have expanded in recent decades, accompanied by large increases in energy, water, and fertilizer consumption, along with considerable losses of biodiversity. Such changes in land use have enabled humans to appropriate an increasing share of the planet’s resources, but they also potentially undermine the capacity of ecosystems to sustain food production, maintain freshwater and forest resources, regulate climate and air quality, and ameliorate infectious diseases. We face the challenge of managing trade-offs between immediate human needs and maintaining the capacity of the biosphere to provide goods and services in the long term.