S
Stephen R. Stockdale
Researcher at University College Cork
Publications - 40
Citations - 1557
Stephen R. Stockdale is an academic researcher from University College Cork. The author has contributed to research in topics: Metagenomics & Human virome. The author has an hindex of 13, co-authored 29 publications receiving 910 citations. Previous affiliations of Stephen R. Stockdale include Teagasc.
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Journal ArticleDOI
ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis.
Andrey N. Shkoporov,Ekaterina V. Khokhlova,C. Brian Fitzgerald,Stephen R. Stockdale,Lorraine A. Draper,R. Paul Ross,R. Paul Ross,Colin Hill +7 more
TL;DR: Bacteriophages of the crAssphage family have not yet been isolated in culture and it is shown that it infects the human gut symbiont Bacteroides intestinalis, confirming previous in silico predictions of the likely host.
Journal ArticleDOI
Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut.
Emma Guerin,Andrey N. Shkoporov,Stephen R. Stockdale,Stephen R. Stockdale,Adam G. Clooney,Feargal J. Ryan,Thomas D.S. Sutton,Lorraine A. Draper,Enrique González-Tortuero,R. Paul Ross,R. Paul Ross,Colin Hill +11 more
TL;DR: Comparing genomics and taxonomic analysis enabled a classification scheme of crAss-like phages from human fecal microbiomes into four candidate subfamilies composed of ten candidate genera, and mass spectrometry of a crAss -like phage capsid protein could be linked to metagenomic sequencing data, confirming crAss, like phage structural annotations.
Journal ArticleDOI
Reproducible protocols for metagenomic analysis of human faecal phageomes.
Andrey N. Shkoporov,Feargal J. Ryan,Lorraine A. Draper,Amanda Forde,Stephen R. Stockdale,Karen Daly,Siobhan A. McDonnell,James A. Nolan,Thomas D.S. Sutton,Marion Dalmasso,Marion Dalmasso,Angela McCann,R. Paul Ross,Colin Hill +13 more
TL;DR: A relatively simple, reproducible and cost-efficient protocol for the extraction of viral nucleic acids from human faecal samples, suitable for high-throughput studies and to reduce discrepancies observed within and between research groups studying the human gut phageome.
Journal ArticleDOI
Clinical characteristics with inflammation profiling of long COVID and association with 1-year recovery following hospitalisation in the UK: a prospective observational study
Tracy Hussell,Ramsey Sabit,Rachel Upthegrove,Daniel M. Forton,T Soulsby,Pádraig T. Kitterick,H. Lamlum,Prathiba Kurupati,Dinesh Saralaya,Sylviane Defres,Elizabeth M. Tunnicliffe,V. Turner,Ruvini Dharmagunawardena,Laurene M. Ratcliffe,Sven Plein,Ross Stimpson,Elizabeth M. Bright,Stephen P. McAdoo,Rob Baggott,Peter Jezzard,D. Sowter,Todd R. Hazelton,Hector Chinoy,Charles F. Lynch,Davies Adeloye,Grant Landers,Richard Morriss,L Gilmour,Charlotte L. Edwardson,Scott M. Palmer,Colin Overton,Chris Carr,Linda Allan,Hans Fisher,H. Newell,Shamyla Siddique,G. Webster Ross,C. P. Singh,Claudia E. Vickers,Laurie J. Morrison,David J. Burn,V.Ann Lewis,Shivani Misra,Cassandra Brookes,David C. Johnston,Sandra Edwards,Serena Coetzee,Paul J. Novotny,D. C. Griffin,T. Gorsuch,Layne T. Watson,Sophie Jose,B. D. Cooper,E Clare Harris,Bakthisaran Raman,Gail Carson,Ssc Kon,Lorcan McGarvey,Patrick McArdle,Simon Heller,C. Barr Taylor,Edward L. Robinson,Ludger Wilhelm Poll,Lucy C. Garner,Shaun Kerr,V. R. Brown,Liam O'Brien,Hilary Tedd,Daniel J. Cuthbertson,Elizabeth Sapey,Robin J. Evans,Holly Foot,Vanessa Shaw,Ed Major,Georgios Kaltsakas,Pedro Almeida,Stephen R. Stockdale,T. Newman,T Hiwot,Teresa R. Wallis,David C. Wraith,Helen McShane,Leah Burden,L. Austin,Gill Arbane,Ray Butcher,B Hargadon,Philip C. Calder,B. Vinson,Luke Daines,S. Betts,Terrence Nicholson,E McIvor,S.A. Payne,Gillian Coakley,Huzaifa Adamali,Umakanta Nanda,S. Walsh,Louise Stadon,T. McNally,P Atkin,E. Davies,Helena G. Ramos,Helena G. Ramos,E. Richardson,C. M. Brown,D Redwood,David A. Lomas,P. W. Carter,S.J. Holden,Helen Parfrey,C McGee,T. Rees,L N Holdsworth,L. Stephenson,L. Finnigan,Chris Laing,B Bang,R. Samuel,B Al-Sheklly,Lydia Warburton,Roche L,Sam Haq,Lisa Zeidan,Claire Kurasz,Tina Burdett,Eva Beranova,Edmund Pacpaco,Susannah Thackray-Nocera,Enya Daynes,Brigid Hairsine,Toby Hillman,Elena Lukaschuk,Emma Baldry,Vicky Kamwa,Inez Wynter,Hannah Bayes,Paul Fraser Harrison,Shannon Amoils,Leanne Osborne,T. Wainwright,Teresa Light,Linda MacLiver,C Evenden,Beverley Ann Whittam,Umair Munawar,H. Kerslake,EK Denneny,Pilar Rivera-Ortega,Rachel Hamil,Phil Hogarth,Sara Fairbairn,E. A. Bevan,E. D. Fraser,Helen Weston,Hannah Jarvis,V. S. Whitehead,Oliver Polgar,B. Guillen Guio,C. Avram,Welch H,Omer Elneima,Clare Megson,Gwendolyn Saalmink,R. Aul,G Simons,R Flockton,Christina Summersgill,David Faluyi,Seonaid Waterson,Lara Lavelle-Langham,L Allsop,Olivier Zongo,L Kingham,Huma Qureshi,L. McMorrow,D. Cristiano,H Nassa,P Dulawan,D Southern,D Foote,S Drain,L Chetham,E Hufton,L Hesselden,E Calvelo,G Madzamba,I Peralta,P McCourt,S Gurram,B Card,Holt L,S Megson,R Osbourne,H Assefa-Kebede,O Olaosebikan,B Jayaraman,S Portukhay,L Milligan,S Linford,H McAllister-Williams,S A Williams-Howard,S Patale,L Broad,Phillip Zawarus,Esther Schmitz-Gundlach,Christopher J. 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Tam,Jean Pierre Enriquez,Sirio Canós-Donnay,Francesca Biagioli,Moustafa Mamdouh Taha El-Tahawy,Randall Borman,Severin Halder,Robert A. Beauregard,Alexandra Marquis,Naveen Kumar Navani,Guangyi Chen,Alan J. Hidy,Holly Mariah Menzies,Shijiang Xiong,A Boyle,Akerke Imbarova,Bowen, Matt,Bruno Pinto Silva,Sara Kianian,Aaron Rasheed Rababaah,MT. Niknejad,Takayoshi Kobayashi,Simone Pfeifer,Ala Hassan,J.A. Mollett,Maria Panagopoulos,Thuy Ung Thi Dieu,Olena Hurko,Marco Di Cataldo,David Cobos Sanchiz,Eric Ferris,Vasilis Sotiropoulos,Juan Gustavo Scheps Grandal,Robert Gugutzer,Bethan Jones,Jennifer Neville,Wenyao Li,Albin Vincent Vettukattil,Dae Youn Hwang,John M. Letiche,Ali Pramono,jerryi,galenawonf,Roland Jaeger,Paola Cristina Videla Riffo,Marc Bungenberg,Schwarz Daniel,Ayokunle Olanrewaju,Ali Shayanfar,Jessica Pisano,Yaodong Wang,Mustafoyeva Mushtariy Zohid qizi +527 more
TL;DR: The Post-hospitalisation COVID-19 study (PHOSP-COVID) as mentioned in this paper is a prospective, longitudinal cohort study recruiting adults (aged ≥18 years) discharged from hospital with COVID19 across the UK.
Journal ArticleDOI
Expansion of known ssRNA phage genomes: From tens to over a thousand
Julie Callanan,Stephen R. Stockdale,Andrey N. Shkoporov,Lorraine A. Draper,R.P. Ross,R.P. Ross,Colin Hill +6 more
TL;DR: A massive expansion in RNA-encoded bacterial viral genomes, which have been overlooked within environments, is reported, including 15,611 nonredundant ssRNA phage sequences, including 1015 near-complete genomes.