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Stephen R. Stockdale

Researcher at University College Cork

Publications -  40
Citations -  1557

Stephen R. Stockdale is an academic researcher from University College Cork. The author has contributed to research in topics: Metagenomics & Human virome. The author has an hindex of 13, co-authored 29 publications receiving 910 citations. Previous affiliations of Stephen R. Stockdale include Teagasc.

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ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis.

TL;DR: Bacteriophages of the crAssphage family have not yet been isolated in culture and it is shown that it infects the human gut symbiont Bacteroides intestinalis, confirming previous in silico predictions of the likely host.
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Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut.

TL;DR: Comparing genomics and taxonomic analysis enabled a classification scheme of crAss-like phages from human fecal microbiomes into four candidate subfamilies composed of ten candidate genera, and mass spectrometry of a crAss -like phage capsid protein could be linked to metagenomic sequencing data, confirming crAss, like phage structural annotations.
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Reproducible protocols for metagenomic analysis of human faecal phageomes.

TL;DR: A relatively simple, reproducible and cost-efficient protocol for the extraction of viral nucleic acids from human faecal samples, suitable for high-throughput studies and to reduce discrepancies observed within and between research groups studying the human gut phageome.
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Clinical characteristics with inflammation profiling of long COVID and association with 1-year recovery following hospitalisation in the UK: a prospective observational study

Tracy Hussell, +527 more
TL;DR: The Post-hospitalisation COVID-19 study (PHOSP-COVID) as mentioned in this paper is a prospective, longitudinal cohort study recruiting adults (aged ≥18 years) discharged from hospital with COVID19 across the UK.
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Expansion of known ssRNA phage genomes: From tens to over a thousand

TL;DR: A massive expansion in RNA-encoded bacterial viral genomes, which have been overlooked within environments, is reported, including 15,611 nonredundant ssRNA phage sequences, including 1015 near-complete genomes.