Preface 1. Spatial concepts and notions 2. Ecological and spatial processes 3. Points, lines and graphs 4. Spatial analysis of complete point location data 5. Contiguous units analysis 6. Spatial analysis of sample data 7. Spatial relationship and multiscale analysis 8. Spatial autocorrelation and inferential tests 9. Spatial partitioning: spatial clusters and boundary detection 10. Spatial diversity analysis 11. Spatio-temporal analysis 12. Closing comments and future directions References Index.

Spatial Analysis A Guide for Ecologists

GENERAL REFERENCE LIST Barbour, M.T., J. Gerritsen, B.D. Snyder, and J.B. Stribling. 1999. Rapid Bioassessment Protocols for Use in Wadeable Streams and Rivers: Periphyton, Benthic Macroinvertebrates, and Fish . 2 nd ed. EPA 814-B-99-002. Washington, D.C.: U.S. Environmental Protection Agency, Office of Water.

We present a 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota, the largest phylum of Fungi. This analysis is the most taxonomically complete to date with species sampled from all 15 currently circumscribed classes. A number of superclass-level nodes that have previously evaded resolution and were unnamed in classifications of the Fungi are resolved for the first time. Based on the 6-gene phylogeny we conducted a phylogenetic informativeness analysis of all 6 genes and a series of ancestral character state reconstructions that focused on morphology of sporocarps, ascus dehiscence, and evolution of nutritional modes and ecologies. A gene-by-gene assessment of phylogenetic informativeness yielded higher levels of informativeness for protein genes (RPB1, RPB2, and TEF1) as compared with the ribosomal genes, which have been the standard bearer in fungal systematics. Our reconstruction of sporocarp characters is consistent with 2 origins for multicellular sexual reproductive structures in Ascomycota, once in the common ancestor of Pezizomycotina and once in the common ancestor of Neolectomycetes. This first report of dual origins of ascomycete sporocarps highlights the complicated nature of assessing homology of morphological traits across Fungi. Furthermore, ancestral reconstruction supports an open sporocarp with an exposed hymenium (apothecium) as the primitive morphology for Pezizomycotina with multiple derivations of the partially (perithecia) or completely enclosed (cleistothecia) sporocarps. Ascus dehiscence is most informative at the class level within Pezizomycotina with most superclass nodes reconstructed equivocally. Character-state reconstructions support a terrestrial, saprobic ecology as ancestral. In contrast to previous studies, these analyses support multiple origins of lichenization events with the loss of lichenization as less frequent and limited to terminal, closely related species.

https://www.fs.fed.us/pnw/pubs/journals/pnw_2009_schoch001.pdf

The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits

Anisotropic (direction-dependent) long-distance dispersal (LDD) by wind has been invoked to explain the strong floristic affinities shared among landmasses in the Southern Hemisphere. Its contribution has not yet been systematically tested because of the previous lack of global data on winds. We used global winds coverage from the National Aeronautics and Space Administration SeaWinds scatterometer to test whether floristic similarities of Southern Hemisphere moss, liverwort, lichen, and pteridophyte floras conform better with (i) the anisotropic LDD hypothesis, which predicts that connection by "wind highways" increases floristic similarities, or (ii) a direction-independent LDD hypothesis, which predicts that floristic similarities among sites increase with geographic proximity. We found a stronger correlation of floristic similarities with wind connectivity than with geographic proximities, which supports the idea that wind is a dispersal vehicle for many organisms in the Southern Hemisphere.

https://science.sciencemag.org/content/sci/304/5674/1144.full.pdf

Wind as a Long-Distance Dispersal Vehicle in the Southern Hemisphere

 Premise of the study: Endophytic and endolichenic fungi occur in healthy tissues of plants and lichens, respectively, playing potentially important roles in the ecology and evolution of their hosts. However, previous sampling has not comprehensively evaluated the biotic, biogeographic, and abiotic factors that structure their communities.  Methods: Using molecular data we examined the diversity, composition, and distributions of 4154 endophytic and endolichenic Ascomycota cultured from replicate surveys of ca. 20 plant and lichen species in each of fiNorth American sites (Madrean coniferous forest, Arizona; montane semideciduous forest, North Carolina; scrub forest, Florida; Beringian tundra and forest, western Alaska; subalpine tundra, eastern central Alaska).  Key results: Endolichenic fungi were more abundant and diverse per host species than endophytes, but communities of endophytes were more diverse overall, refl ecting high diversity in mosses and lycophytes. Endophytes of vascular plants were largely distinct from fungal communities that inhabit mosses and lichens. Fungi from closely related hosts from different regions were similar in higher taxonomy, but differed at shallow taxonomic levels. These differences refl ected climate factors more strongly than geographic distance alone.  Conclusions: Our study provides a fi rst evaluation of endophytic and endolichenic fungal associations with their hosts at a continental scale. Both plants and lichens harbor abundant and diverse fungal communities whose incidence, diversity, and composition refl ect the interplay of climatic patterns, geographic separation, host type, and host lineage. Although culture-free methods will inform future work, our study sets the stage for empirical assessments of ecological specifi city, metabolic capability, and comparative genomics.

Host and geographic structure of endophytic and endolichenic fungi at a continental scale

Lichens are a unique form of plant life, the product of a symbiotic association between an alga and a fungus. The beauty and importance of lichens have long been overlooked, despite their abundance and diversity in most parts of North America and elsewhere in the world. This stunning book - the first accessible and authoritative guidebook to lichens of the North American continent - fills the gap, presenting superb colour photographs, descriptions, distribution maps, and keys for identifying the most common, conspicuous, or ecologically significant species. The book focuses on 805 foliose, fruticose, and crustose lichens (the latter rarely included in popular guidebooks) and presents information on another 70 species in the keys or notes, special attention is given to species endemic to North America. A comprehensive introduction discusses the biology, structure, uses, and ecological significance of lichens and is illustrated with 90 additional colour photos and many line drawings. English names are provided for most species, and the book also includes a glossary that explains technical terms. This visually rich and informative book will open the eyes of nature lovers everywhere to the fascinating world of lichens.

Lichens of North America

/pdf/lichens-of-north-america-3sursh735n.pdf

Stephen Sharnoff

Papers

Lichens of North America

Lichens of North America