S
Sutopa B. Dwivedi
Researcher at Amrita Vishwa Vidyapeetham
Publications - 9
Citations - 598
Sutopa B. Dwivedi is an academic researcher from Amrita Vishwa Vidyapeetham. The author has contributed to research in topics: Gene & Proteome. The author has an hindex of 8, co-authored 8 publications receiving 556 citations.
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Journal ArticleDOI
A Compendium of Potential Biomarkers of Pancreatic Cancer
H. C. Harsha,Kumaran Kandasamy,Prathibha Ranganathan,Sandhya G. Rani,Subhashri Ramabadran,Sashikanth Gollapudi,Lavanya Balakrishnan,Sutopa B. Dwivedi,Deepthi Telikicherla,Lakshmi Dhevi N. Selvan,Renu Goel,Suresh Mathivanan,Arivusudar Marimuthu,Arivusudar Marimuthu,Manoj Kumar Kashyap,Robert F. Vizza,Robert J. Mayer,James A. DeCaprio,Sudhir Srivastava,Samir M. Hanash,Ralph H. Hruban,Akhilesh Pandey +21 more
TL;DR: A compendium of potential biomarkers that can be systematically validated by the pancreatic cancer community is described.
Journal ArticleDOI
Identifying targets of miR-143 using a SILAC-based proteomic approach
Yi Yang,Raghothama Chaerkady,Kumaran Kandasamy,Tai-Chung Huang,Lakshmi Dhevi N. Selvan,Sutopa B. Dwivedi,Oliver A. Kent,Joshua T. Mendell,Akhilesh Pandey +8 more
TL;DR: In this paper, a SILAC-based quantitative proteomic strategy was employed to systematically identify potential targets of miR-143, which is a miRNA involved in tumorigenesis in multiple types of cancer, smooth muscle cell fate and adipocyte differentiation.
Journal ArticleDOI
Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes
T. S. Keshava Prasad,T. S. Keshava Prasad,Ajeet Kumar Mohanty,Ajeet Kumar Mohanty,Manish Kumar,Sreelakshmi K. Sreenivasamurthy,Gourav Dey,Raja Sekhar Nirujogi,Sneha M. Pinto,Anil K. Madugundu,Arun H. Patil,Jayshree Advani,Srikanth S. Manda,Manoj Kumar Gupta,Sutopa B. Dwivedi,Dhanashree S. Kelkar,Brantley Hall,Xiaofang Jiang,Ashley Peery,Pavithra Rajagopalan,Soujanya D. Yelamanchi,Hitendra S. Solanki,Remya Raja,Gajanan Sathe,Sandip Chavan,Renu Verma,Krishna Patel,Ankit P. Jain,Nazia Syed,Keshava K. Datta,Aafaque Ahmed Khan,Manjunath Dammalli,Savita Jayaram,Aneesha Radhakrishnan,Chris J. Mitchell,Chan Hyun Na,Nirbhay Kumar,Photini Sinnis,Igor V. Sharakhov,Charles Wang,Harsha Gowda,Zhijian Tu,Ashwani Kumar,Akhilesh Pandey +43 more
TL;DR: The data provide a framework for how future genome sequencing efforts should incorporate transcriptomic and proteomic analysis in combination with simultaneous manual curation to achieve near complete assembly and accurate annotation of genomes.
Journal ArticleDOI
Gene Expression Profiling of Gastric Cancer.
Arivusudar Marimuthu,Harrys K.C. Jacob,Aniruddha Jakharia,Yashwanth Subbannayya,Shivakumar Keerthikumar,Manoj Kumar Kashyap,Renu Goel,Lavanya Balakrishnan,Sutopa B. Dwivedi,Swapnali Pathare,Jyoti Bajpai Dikshit,Jagadeesha Maharudraiah,S. Singh,Ghantasala S. Sameer Kumar,M. Vijayakumar,Kariyanakatte Veeraiah Veerendra Kumar,Chennagiri Shrinivasamurthy Premalatha,Pramila Tata,Ramesh Hariharan,Juan Carlos Roa,Thottethodi Subrahmanya Keshava Prasad,Raghothama Chaerkady,Rekha V. Kumar,Akhilesh Pandey +23 more
TL;DR: In this article, a genomewide gene expression analysis was carried out to identify differentially expressed genes in gastric adenocarcinoma tissues as compared to adjacent normal tissues.
Journal ArticleDOI
A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry
Raghothama Chaerkady,Dhanashree S. Kelkar,Babylakshmi Muthusamy,Kumaran Kandasamy,Sutopa B. Dwivedi,Nandini A. Sahasrabuddhe,Nandini A. Sahasrabuddhe,Min-Sik Kim,Santosh Renuse,Santosh Renuse,Sneha M. Pinto,Rakesh Sharma,Harsh Pawar,Nirujogi Raja Sekhar,Ajeet Kumar Mohanty,Derese Getnet,Yi Yang,Jun Zhong,Aditya P Dash,Robert M. MacCallum,Bernard Delanghe,Godfree Mlambo,Ashwani Kumar,T. S. Keshava Prasad,T. S. Keshava Prasad,Mobolaji Okulate,Nirbhay Kumar,Nirbhay Kumar,Akhilesh Pandey +28 more
TL;DR: This is a first report to annotate the An.