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Thomas D. Goddard

Researcher at University of California, San Francisco

Publications -  15
Citations -  44105

Thomas D. Goddard is an academic researcher from University of California, San Francisco. The author has contributed to research in topics: Software & Visualization. The author has an hindex of 14, co-authored 15 publications receiving 32547 citations.

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UCSF Chimera--a visualization system for exploratory research and analysis.

TL;DR: Two unusual extensions are presented: Multiscale, which adds the ability to visualize large‐scale molecular assemblies such as viral coats, and Collaboratory, which allows researchers to share a Chimera session interactively despite being at separate locales.
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UCSF ChimeraX: Structure visualization for researchers, educators, and developers.

TL;DR: ChimeraX brings significant performance and graphics enhancements, new implementations of Chimera's most highly used tools, several entirely new analysis features, and support for new areas such as virtual reality, light‐sheet microscopy, and medical imaging data.
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UCSF ChimeraX: Meeting modern challenges in visualization and analysis.

TL;DR: This article highlights some specific advances in the areas of visualization and usability, performance, and extensibility in ChimeraX.
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Visualizing density maps with UCSF Chimera.

TL;DR: Methods for interactive visualization and analysis of density maps available in the UCSF Chimera molecular modeling package enable segmentation, fitting, coarse modeling, measuring and coloring ofdensity maps for elucidating structures of large molecular assemblies such as virus particles, ribosomes, microtubules, and chromosomes.
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UCSF Chimera, MODELLER, and IMP: an Integrated Modeling System

TL;DR: Several modeling tools into UCSF Chimera include comparative modeling by MODELLER, simultaneous fitting of multiple components into electron microscopy density maps by IMP MultiFit, computing of small-angle X-ray scattering profiles and fitting of the corresponding experimental profile by IMP FoXS, and assessment of amino acid sidechain conformations based on rotamer probabilities and local interactions by Chimera.