Tim Harris

Bio: Tim Harris is an academic researcher from Oracle Corporation. The author has contributed to research in topics: Transactional memory & Software transactional memory. The author has an hindex of 44, co-authored 173 publications receiving 15244 citations. Previous affiliations of Tim Harris include Amazon.com & Microsoft.

Xen and the art of virtualization

Abstract: Numerous systems have been designed which use virtualization to subdivide the ample resources of a modern computer. Some require specialized hardware, or cannot support commodity operating systems. Some target 100% binary compatibility at the expense of performance. Others sacrifice security or functionality for speed. Few offer resource isolation or performance guarantees; most provide only best-effort provisioning, risking denial of service.This paper presents Xen, an x86 virtual machine monitor which allows multiple commodity operating systems to share conventional hardware in a safe and resource managed fashion, but without sacrificing either performance or functionality. This is achieved by providing an idealized virtual machine abstraction to which operating systems such as Linux, BSD and Windows XP, can be ported with minimal effort.Our design is targeted at hosting up to 100 virtual machine instances simultaneously on a modern server. The virtualization approach taken by Xen is extremely efficient: we allow operating systems such as Linux and Windows XP to be hosted simultaneously for a negligible performance overhead --- at most a few percent compared with the unvirtualized case. We considerably outperform competing commercial and freely available solutions in a range of microbenchmarks and system-wide tests.

The multikernel: a new OS architecture for scalable multicore systems

Abstract: Commodity computer systems contain more and more processor cores and exhibit increasingly diverse architectural tradeoffs, including memory hierarchies, interconnects, instruction sets and variants, and IO configurations. Previous high-performance computing systems have scaled in specific cases, but the dynamic nature of modern client and server workloads, coupled with the impossibility of statically optimizing an OS for all workloads and hardware variants pose serious challenges for operating system structures.We argue that the challenge of future multicore hardware is best met by embracing the networked nature of the machine, rethinking OS architecture using ideas from distributed systems. We investigate a new OS structure, the multikernel, that treats the machine as a network of independent cores, assumes no inter-core sharing at the lowest level, and moves traditional OS functionality to a distributed system of processes that communicate via message-passing.We have implemented a multikernel OS to show that the approach is promising, and we describe how traditional scalability problems for operating systems (such as memory management) can be effectively recast using messages and can exploit insights from distributed systems and networking. An evaluation of our prototype on multicore systems shows that, even on present-day machines, the performance of a multikernel is comparable with a conventional OS, and can scale better to support future hardware.

Composable memory transactions

Abstract: Writing concurrent programs is notoriously difficult, and is of increasing practical importance. A particular source of concern is that even correctly-implemented concurrency abstractions cannot be composed together to form larger abstractions. In this paper we present a new concurrency model, based on transactional memory, that offers far richer composition. All the usual benefits of transactional memory are present (e.g. freedom from deadlock), but in addition we describe new modular forms of blocking and choice that have been inaccessible in earlier work.

Language support for lightweight transactions

Abstract: Concurrent programming is notoriously difficult. Current abstractions are intricate and make it hard to design computer systems that are reliable and scalable. We argue that these problems can be addressed by moving to a declarative style of concurrency control in which programmers directly indicate the safety properties that they require. In our scheme the programmer demarks sections of code which execute within lightweight software-based transactions that commit atomically and exactly once. These transactions can update shared data, instantiate objects, invoke library features and so on. They can also block, waiting for arbitrary boolean conditions to become true. Transactions which do not access the same shared memory locations can commit concurrently. Furthermore, in general, no performance penalty is incurred for memory accesses outside transactions.We present a detailed design of this proposal along with an implementation and evaluation. We argue that the resulting system (i) is easier for mainstream programmers to use, (ii) prevents lock-based priority-inversion and deadlock problems and (iii) can offer performance advantages.

A Pragmatic Implementation of Non-blocking Linked-Lists

Abstract: We present a new non-blocking implementation of concurrent linked-lists supporting linearizable insertion and deletion operations. The new algorithm provides substantial benefits over previous schemes: it is conceptually simpler and our prototype operates substantially faster.

Xen and the art of virtualization

Abstract: Numerous systems have been designed which use virtualization to subdivide the ample resources of a modern computer. Some require specialized hardware, or cannot support commodity operating systems. Some target 100% binary compatibility at the expense of performance. Others sacrifice security or functionality for speed. Few offer resource isolation or performance guarantees; most provide only best-effort provisioning, risking denial of service.This paper presents Xen, an x86 virtual machine monitor which allows multiple commodity operating systems to share conventional hardware in a safe and resource managed fashion, but without sacrificing either performance or functionality. This is achieved by providing an idealized virtual machine abstraction to which operating systems such as Linux, BSD and Windows XP, can be ported with minimal effort.Our design is targeted at hosting up to 100 virtual machine instances simultaneously on a modern server. The virtualization approach taken by Xen is extremely efficient: we allow operating systems such as Linux and Windows XP to be hosted simultaneously for a negligible performance overhead --- at most a few percent compared with the unvirtualized case. We considerably outperform competing commercial and freely available solutions in a range of microbenchmarks and system-wide tests.

Live migration of virtual machines

Abstract: Migrating operating system instances across distinct physical hosts is a useful tool for administrators of data centers and clusters: It allows a clean separation between hard-ware and software, and facilitates fault management, load balancing, and low-level system maintenance.By carrying out the majority of migration while OSes continue to run, we achieve impressive performance with minimal service downtimes; we demonstrate the migration of entire OS instances on a commodity cluster, recording service downtimes as low as 60ms. We show that that our performance is sufficient to make live migration a practical tool even for servers running interactive loads.In this paper we consider the design options for migrating OSes running services with liveness constraints, focusing on data center and cluster environments. We introduce and analyze the concept of writable working set, and present the design, implementation and evaluation of high-performance OS migration built on top of the Xen VMM.

A Survey on Mobile Edge Computing: The Communication Perspective

Abstract: Driven by the visions of Internet of Things and 5G communications, recent years have seen a paradigm shift in mobile computing, from the centralized mobile cloud computing toward mobile edge computing (MEC). The main feature of MEC is to push mobile computing, network control and storage to the network edges (e.g., base stations and access points) so as to enable computation-intensive and latency-critical applications at the resource-limited mobile devices. MEC promises dramatic reduction in latency and mobile energy consumption, tackling the key challenges for materializing 5G vision. The promised gains of MEC have motivated extensive efforts in both academia and industry on developing the technology. A main thrust of MEC research is to seamlessly merge the two disciplines of wireless communications and mobile computing, resulting in a wide-range of new designs ranging from techniques for computation offloading to network architectures. This paper provides a comprehensive survey of the state-of-the-art MEC research with a focus on joint radio-and-computational resource management. We also discuss a set of issues, challenges, and future research directions for MEC research, including MEC system deployment, cache-enabled MEC, mobility management for MEC, green MEC, as well as privacy-aware MEC. Advancements in these directions will facilitate the transformation of MEC from theory to practice. Finally, we introduce recent standardization efforts on MEC as well as some typical MEC application scenarios.

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

Abstract: Motivation: Counting the number of occurrences of every k-mer (substring of length k) in a long string is a central subproblem in many applications, including genome assembly, error correction of sequencing reads, fast multiple sequence alignment and repeat detection. Recently, the deep sequence coverage generated by next-generation sequencing technologies has caused the amount of sequence to be processed during a genome project to grow rapidly, and has rendered current k-mer counting tools too slow and memory intensive. At the same time, large multicore computers have become commonplace in research facilities allowing for a new parallel computational paradigm. Results: We propose a new k-mer counting algorithm and associated implementation, called Jellyfish, which is fast and memory efficient. It is based on a multithreaded, lock-free hash table optimized for counting k-mers up to 31 bases in length. Due to their flexibility, suffix arrays have been the data structure of choice for solving many string problems. For the task of k-mer counting, important in many biological applications, Jellyfish offers a much faster and more memory-efficient solution. Availability: The Jellyfish software is written in C++ and is GPL licensed. It is available for download at http://www.cbcb.umd.edu/software/jellyfish. Contact: [email protected] Supplementary information:Supplementary data are available at Bioinformatics online.