Timothy W. Lyons

Bio: Timothy W. Lyons is an academic researcher from University of California, Riverside. The author has contributed to research in topics: Pyrite & Anoxic waters. The author has an hindex of 89, co-authored 292 publications receiving 27658 citations. Previous affiliations of Timothy W. Lyons include Harvard University & NASA Astrobiology Institute.

The rise of oxygen in Earth’s early ocean and atmosphere

Abstract: The rapid increase of carbon dioxide concentration in Earth’s modern atmosphere is a matter of major concern. But for the atmosphere of roughly two-and-half billion years ago, interest centres on a different gas: free oxygen (O2) spawned by early biological production. The initial increase of O2 in the atmosphere, its delayed build-up in the ocean, its increase to near-modern levels in the sea and air two billion years later, and its cause-and-effect relationship with life are among the most compelling stories in Earth’s history.

Tracing the stepwise oxygenation of the Proterozoic ocean

Abstract: The oxygenation of the Earth's atmosphere is thought to have occurred in two steps near the beginning and the end of the Proterozoic eon, around 2,500 to 550 million years ago. The oxidation state of the ocean between these two steps and the timing of deep ocean oxygenation, however, remain poorly known. Scott et al. now use molybdenum and total organic carbon data from black shales to track the redox state of the ocean at this time. Molybdenum is an essential participant in nutrient cycling, and its availability is highly sensitive to Earth's redox state. The results provide a new narrative for the historical texture of Earth's oxygenation, and will be of relevance for the study of the events that presaged the appearance of animals on Earth. Molybdenum and total organic carbon data from black shales is used to gain insights into the redox state of the ocean. The data suggests mild oxidative weathering of the continents before ∼2,200 Myr ago, but weathering becomes more persistent and vigorous at ∼2,150 Myr ago, 200 million years after the initial rise in atmospheric oxygen. Limited availability of molybdenum after 1,800 Myr ago may have acted as a negative nutrient feedback limiting the spatial and temporal extent of sulphidic conditions. Biogeochemical signatures preserved in ancient sedimentary rocks provide clues to the nature and timing of the oxygenation of the Earth’s atmosphere. Geochemical data1,2,3,4,5,6 suggest that oxygenation proceeded in two broad steps near the beginning and end of the Proterozoic eon (2,500 to 542 million years ago). The oxidation state of the Proterozoic ocean between these two steps and the timing of deep-ocean oxygenation have important implications for the evolutionary course of life on Earth but remain poorly known. Here we present a new perspective on ocean oxygenation based on the authigenic accumulation of the redox-sensitive transition element molybdenum in sulphidic black shales. Accumulation of authigenic molybdenum from sea water is already seen in shales by 2,650 Myr ago; however, the small magnitudes of these enrichments reflect weak or transient7 sources of dissolved molybdenum before about 2,200 Myr ago, consistent with minimal oxidative weathering of the continents. Enrichments indicative of persistent and vigorous oxidative weathering appear in shales deposited at roughly 2,150 Myr ago, more than 200 million years after the initial rise in atmospheric oxygen1,2. Subsequent expansion of sulphidic conditions after about 1,800 Myr ago (refs 8, 9) maintained a mid-Proterozoic molybdenum reservoir below 20 per cent of the modern inventory, which in turn may have acted as a nutrient feedback limiting the spatiotemporal distribution of euxinic (sulphidic) bottom waters and perhaps the evolutionary and ecological expansion of eukaryotic organisms10. By 551 Myr ago, molybdenum contents reflect a greatly expanded oceanic reservoir due to oxygenation of the deep ocean and corresponding decrease in sulphidic conditions in the sediments and water column.

Mo–total organic carbon covariation in modern anoxic marine environments: Implications for analysis of paleoredox and paleohydrographic conditions

Abstract: [1] Sedimentary molybdenum, [Mo]s, has been widely used as a proxy for benthic redox potential owing to its generally strong enrichment in organic-rich marine facies deposited under oxygen-depleted conditions A detailed analysis of [Mo]s–total organic carbon (TOC) covariation in modern anoxic marine environments and its relationship to ambient water chemistry suggests that (1) [Mo]s, while useful in distinguishing oxic from anoxic facies, is not related in a simple manner to dissolved sulfide concentrations within euxinic environments and (2) patterns of [Mo]s-TOC covariation can provide information about paleohydrographic conditions, especially the degree of restriction of the subchemoclinal water mass and temporal changes thereof related to deepwater renewal These inferences are based on data from four anoxic silled basins (the Black Sea, Framvaren Fjord, Cariaco Basin, and Saanich Inlet) and one upwelling zone (the Namibian Shelf), representing a spectrum of aqueous chemical conditions related to water mass restriction In the silled-basin environments, increasing restriction is correlated with a systematic decrease in [Mo]s/TOC ratios, from ∼45 ± 5 for Saanich Inlet to ∼45 ± 1 for the Black Sea This variation reflects control of [Mo]s by [Mo]aq, which becomes depleted in stagnant basins through removal to the sediment without adequate resupply by deepwater renewal (the “basin reservoir effect”) The temporal dynamics of this process are revealed by high-resolution chemostratigraphic data from Framvaren Fjord and Cariaco Basin sediment cores, which exhibit long-term trends toward lower [Mo]s/TOC ratios following development of water column stratification and deepwater anoxia Mo burial fluxes peak in weakly sulfidic environments such as Saanich Inlet (owing to a combination of greater [Mo]aq availability and enhanced Mo transport to the sediment-water interface via Fe-Mn redox cycling) and are lower in strongly sulfidic environments such as the Black Sea and Framvaren Fjord These observations demonstrate that, at timescales associated with deepwater renewal in anoxic silled basins, decreased sedimentary Mo concentrations and burial fluxes are associated with lower benthic redox potentials (ie, more sulfidic conditions) These conclusions apply only to anoxic marine environments exhibiting some degree of water mass restriction (eg, silled basins) and are not valid for low-oxygen facies in open marine settings such as continent-margin upwelling systems

A Whiff of Oxygen Before the Great Oxidation Event

Abstract: High-resolution chemostratigraphy reveals an episode of enrichment of the redox-sensitive transition metals molybdenum and rhenium in the late Archean Mount McRae Shale in Western Australia. Correlations with organic carbon indicate that these metals were derived from contemporaneous seawater. Rhenium/osmium geochronology demonstrates that the enrichment is a primary sedimentary feature dating to 2501 ± 8 million years ago (Ma). Molybdenum and rhenium were probably supplied to Archean oceans by oxidative weathering of crustal sulfide minerals. These findings point to the presence of small amounts of O 2 in the environment more than 50 million years before the start of the Great Oxidation Event.

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

Influence of Diet On the Distribtion of Nitrogen Isotopes in Animals

Abstract: The influence of diet on the distribution of nitrogen isotopes in animals was investigated by analyzing animals grown in the laboratory on diets of constant nitrogen isotopic composition. The isotopic composition of the nitrogen in an animal reflects the nitrogen isotopic composition of its diet. The δ^(15)N values of the whole bodies of animals are usually more positive than those of their diets. Different individuals of a species raised on the same diet can have significantly different δ^(15)N values. The variability of the relationship between the δ^(15)N values of animals and their diets is greater for different species raised on the same diet than for the same species raised on different diets. Different tissues of mice are also enriched in ^(15)N relative to the diet, with the difference between the δ^(15)N values of a tissue and the diet depending on both the kind of tissue and the diet involved. The δ^(15)N values of collagen and chitin, biochemical components that are often preserved in fossil animal remains, are also related to the δ^(15)N value of the diet. The dependence of the δ^(15)N values of whole animals and their tissues and biochemical components on the δ^(15)N value of diet indicates that the isotopic composition of animal nitrogen can be used to obtain information about an animal's diet if its potential food sources had different δ^(15)N values. The nitrogen isotopic method of dietary analysis probably can be used to estimate the relative use of legumes vs non-legumes or of aquatic vs terrestrial organisms as food sources for extant and fossil animals. However, the method probably will not be applicable in those modern ecosystems in which the use of chemical fertilizers has influenced the distribution of nitrogen isotopes in food sources. The isotopic method of dietary analysis was used to reconstruct changes in the diet of the human population that occupied the Tehuacan Valley of Mexico over a 7000 yr span. Variations in the δ^(15)C and δ^(15)N values of bone collagen suggest that C_4 and/or CAM plants (presumably mostly corn) and legumes (presumably mostly beans) were introduced into the diet much earlier than suggested by conventional archaeological analysis.

Kirk-Othmer Encyclopedia of Chemical Technology数据库介绍及实例

Abstract: 介绍了Kirk—Othmer Encyclopedia of Chemical Technology（化工技术百科全书）（第五版）电子图书网络版数据库，并对该数据库使用方法和检索途径作出了说明，且结合实例简单地介绍了该数据库的检索方法。