Tomislav Šmuc

TL;DR: REVIGO is a Web server that summarizes long, unintelligible lists of GO terms by finding a representative subset of the terms using a simple clustering algorithm that relies on semantic similarity measures.

TL;DR: Today's best protein function prediction algorithms substantially outperform widely used first-generation methods, with large gains on all types of targets, and there is considerable need for improvement of currently available tools.

TL;DR: The third CAFA challenge, CAFA3, that featured an expanded analysis over the previous CAFA rounds, both in terms of volume of data analyzed and the types of analysis performed, concluded that while predictions of the molecular function and biological process annotations have slightly improved over time, those of the cellular component have not.

TL;DR: It is reported that the CAFA community now involves a broad range of participants with expertise in bioinformatics, biological experimentation, biocuration, and bioontologies, working together to improve functional annotation, computational function prediction, and the ability to manage big data in the era of large experimental screens.

TL;DR: The statistical inference problem of detecting the source of epidemics from a snapshot of spreading on an arbitrary network structure is studied and the detectability limits for the susceptible-infected-recovered model, which primarily depend on the spreading process characteristics are demonstrated.