Tony Fountain

Bio: Tony Fountain is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Wireless sensor network & Cyberinfrastructure. The author has an hindex of 14, co-authored 30 publications receiving 913 citations. Previous affiliations of Tony Fountain include Smithsonian Tropical Research Institute & University of California, Los Angeles.

Software, Data and Modelling News: The Movebank data model for animal tracking

Abstract: Studies of animal movement are rapidly increasing as tracking technologies make it possible to collect more data of a larger variety of species. Comparisons of animal movement across sites, times, or species are key to asking questions about animal adaptation, responses to climate and land-use change. Thus, great gains can be made by sharing and exchanging animal tracking data. Here we present an animal movement data model that we use within the Movebank web application to describe tracked animals. The model facilitates data comparisons across a broad range of taxa, study designs, and technologies, and is based on the scientific questions that could be addressed with the data.

Tracking Animal Location and Activity with an Automated Radio Telemetry System in a Tropical Rainforest

Abstract: How do animals use their habitat? Where do they go and what do they do? These basic questions are key not only to understanding a species’ ecology and evolution, but also for addressing many of the environmental challenges we currently face, including problems posed by invasive species, the spread of zoonotic diseases and declines in wildlife populations due to anthropogenic climate and land-use changes. Monitoring the movements and activities of wild animals can be difficult, especially when the species in question are small, cryptic or move over large areas. In this paper, we describe an Automated Radio-Telemetry System (ARTS) that we designed and built on Barro Colorado Island (BCI), Panama to overcome these challenges. We describe the hardware and software we used to implement the ARTS, and discuss the scientific successes we have had using the system, as well as the logistical challenges we faced in maintaining the system in real-world, rainforest conditions. The ARTS uses automated radio-telemetry receivers mounted on 40-m towers topped with arrays of directional antennas to track the activity and location of radio-collared study animals, 24Â h a day, 7 days a week. These receiving units are connected by a wireless network to a server housed in the laboratory on BCI, making these data available in real time to researchers via a web-accessible database. As long as study animals are within the range of the towers, the ARTS system collects data more frequently than typical animal-borne global positioning system collars (~12Â locations/h) with lower accuracy (approximately 50Â m) but at much reduced cost per tag (~10X less expensive). The geographic range of ARTS, like all VHF telemetry, is affected by the size of the radio-tag as well as its position in the forest (e.g. tags in the canopy transmit farther than those on the forest floor). We present a model of signal propagation based on landscape conditions, which quantifies these effects and identifies sources of interference, including weather events and human activity. ARTS has been used to track 374 individual animals from 38 species, including 17 mammal species, 12 birds, 7 reptiles or amphibians, as well as two species of plant seeds. These data elucidate the spatio-temporal dynamics of animal activity and movement at the site and have produced numerous peer-reviewed publications, student theses, magazine articles, educational programs and film documentaries. These data are also relevant to long-term population monitoring and conservation plans. Both the successes and the failures of the ARTS system are applicable to broader sensor network applications and are valuable for advancing sensor network research.

Camera Traps as Sensor Networks for Monitoring Animal Communities

Abstract: Studying animal movement and distribution is of critical importance to addressing environmental challenges including invasive species, infectious diseases, climate and land-use change. Motion sensitive camera traps offer a visual sensor to record the presence of a broad range of species providing location – specific information on movement and behavior. Modern digital camera traps that record video present not only new analytical opportunities, but also new data management challenges. This paper describes our experience with a terrestrial animal monitoring system at Barro Colorado Island, Panama. Our camera network captured the spatio-temporal dynamics of terrestrial bird and mammal activity at the site - data relevant to immediate science questions, and long-term conservation issues. We believe that the experience gained and lessons learned during our year-long deployment and testing of the camera traps as well as the developed solutions are applicable to broader sensor network applications and are valuable for the advancement of the sensor network research. We suggest that the continued development of these hardware, software, and analytical tools, in concert, offer an exciting sensor-network solution to monitoring of animal populations which could realistically scale over larger areas and time spans

Camera traps as sensor networks for monitoring animal communities

Abstract: Studying animal movement and distribution is of critical importance to addressing environmental challenges including invasive species, infectious diseases, climate and land-use change. Motion sensitive camera traps offer a visual sensor to record the presence of a species at a location, recording their movement in the Eulerian sense. Modern digital camera traps that record video present new analytical opportunities, but also new data management challenges. This paper describes our experience with a year-long terrestrial animal monitoring system at Barro Colorado Island, Panama. The data gathered from our camera network shows the spatio-temporal dynamics of terrestrial bird and mammal activity at the site - data relevant to immediate science questions, and long-term conservation issues. We believe that the experience gained and lessons learned during our year long deployment and testing of the camera traps are applicable to broader sensor network applications and are valuable for the advancement of the sensor network research. We suggest that the continued development of these hardware, software, and analytical tools, in concert, offer an exciting sensor-network solution to monitoring of animal populations which could realistically scale over larger areas and time spans.

The Ring Buffer Network Bus (RBNB) DataTurbine Streaming Data Middleware for Environmental Observing Systems

Abstract: The environmental science and engineering communities are actively engaged in planning and developing the next generation of large-scale sensor-based observing systems. These systems face two significant challenges: heterogeneity of instrumentation and complexity of data stream processing. Environmental observing systems incorporate instruments across the spectrum of complexity, from temperature sensors to acoustic Doppler current profilers, to streaming video cameras. Managing these instruments and their data streams is a serious challenge. Critical infrastructure requirements common to all of these sensor-based observing systems are reliable data transport, the promotion of sensors and sensor streams to first-class objects, a framework for the integration of heterogeneous instruments, and a comprehensive suite of services for data management, routing, synchronization, monitoring, and visualization. In this paper we present the RBNB DataTurbine, an open-source streaming data middleware system, and discuss how the RBNB DataTurbine satisfies the critical cyberinfrastructure requirements core to these sensor-based observing systems. The discussion includes the results from real-world deployments.

Pattern Recognition and Machine Learning

Abstract: Probability Distributions.- Linear Models for Regression.- Linear Models for Classification.- Neural Networks.- Kernel Methods.- Sparse Kernel Machines.- Graphical Models.- Mixture Models and EM.- Approximate Inference.- Sampling Methods.- Continuous Latent Variables.- Sequential Data.- Combining Models.

Terrestrial animal tracking as an eye on life and planet

Abstract: BACKGROUND The movement of animals makes them fascinating but difficult study subjects. Animal movements underpin many biological phenomena, and understanding them is critical for applications in conservation, health, and food. Traditional approaches to animal tracking used field biologists wielding antennas to record a few dozen locations per animal, revealing only the most general patterns of animal space use. The advent of satellite tracking automated this process, but initially was limited to larger animals and increased the resolution of trajectories to only a few hundred locations per animal. The last few years have shown exponential improvement in tracking technology, leading to smaller tracking devices that can return millions of movement steps for ever-smaller animals. Finally, we have a tool that returns high-resolution data that reveal the detailed facets of animal movement and its many implications for biodiversity, animal ecology, behavior, and ecosystem function. ADVANCES Improved technology has brought animal tracking into the realm of big data, not only through high-resolution movement trajectories, but also through the addition of other on-animal sensors and the integration of remote sensing data about the environment through which these animals are moving. These new data are opening up a breadth of new scientific questions about ecology, evolution, and physiology and enable the use of animals as sensors of the environment. High–temporal resolution movement data also can document brief but important contacts between animals, creating new opportunities to study social networks, as well as interspecific interactions such as competition and predation. With solar panels keeping batteries charged, “lifetime” tracks can now be collected for some species, while broader approaches are aiming for species-wide sampling across multiple populations. Miniaturized tags also help reduce the impact of the devices on the study subjects, improving animal welfare and scientific results. As in other disciplines, the explosion of data volume and variety has created new challenges and opportunities for information management, integration, and analysis. In an exciting interdisciplinary push, biologists, statisticians, and computer scientists have begun to develop new tools that are already leading to new insights and scientific breakthroughs. OUTLOOK We suggest that a golden age of animal tracking science has begun and that the upcoming years will be a time of unprecedented exciting discoveries. Technology continues to improve our ability to track animals, with the promise of smaller tags collecting more data, less invasively, on a greater variety of animals. The big-data tracking studies that are just now being pioneered will become commonplace. If analytical developments can keep pace, the field will be able to develop real-time predictive models that integrate habitat preferences, movement abilities, sensory capacities, and animal memories into movement forecasts. The unique perspective offered by big-data animal tracking enables a new view of animals as naturally evolved sensors of environment, which we think has the potential to help us monitor the planet in completely new ways. A massive multi-individual monitoring program would allow a quorum sensing of our planet, using a variety of species to tap into the diversity of senses that have evolved across animal groups, providing new insight on our world through the sixth sense of the global animal collective. We expect that the field will soon reach a transformational point where these studies do more than inform us about particular species of animals, but allow the animals to teach us about the world.

Elementary Survey Sampling

Abstract: This introductory text on the design and analysis of sample surveys emphasizes the practical aspects of survey problems. It begins with brief chapters on the role of sample surveys in the modern world. Thereafter, each chapter introduces a sample survey design or estimation procedure by describing the pertinent practical problem. The authors describe the methodology proposed for solving the problem and provide the details of the estimation procedure, including a compact presentation of the formulas needed to complete the analysis. Then, a practical example is worked out in complete detail. At the end of each chapter, a wealth of exercises gives students ample opportunity to practice the techniques and stretch their grasp of ideas.

Data Mining in Manufacturing: A Review

Abstract: The paper reviews applications of data mining in manufacturing engineering, in particular production processes, operations, fault detection, maintenance, decision support, and product quality improvement. Customer relationship management, information integration aspects, and standardization are also briefly discussed. This review is focused on demonstrating the relevancy of data mining to manufacturing industry, rather than discussing the data mining domain in general. The volume of general data mining literature makes it difficult to gain a precise view of a target area such as manufacturing engineering, which has its own particular needs and requirements for mining applications. This review reveals progressive applications in addition to existing gaps and less considered areas such as manufacturing planning and shop floor control.