T
Tung T. Nguyen
Researcher at Ho Chi Minh City University of Technology
Publications - 206
Citations - 14044
Tung T. Nguyen is an academic researcher from Ho Chi Minh City University of Technology. The author has contributed to research in topics: Catalysis & Heterogeneous catalysis. The author has an hindex of 36, co-authored 183 publications receiving 10446 citations. Previous affiliations of Tung T. Nguyen include Brown University & Vietnam National University, Ho Chi Minh City.
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Journal ArticleDOI
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani,Adrian E. Platts,Le Lily Wang,M. Coon,Tung T. Nguyen,Luan Wang,Susan Land,Xiangyi Lu,Douglas M. Ruden +8 more
TL;DR: It appears that the 5′ and 3′ UTRs are reservoirs for genetic variations that changes the termini of proteins during evolution of the Drosophila genus.
Journal ArticleDOI
Using Drosophila melanogaster as a Model for Genotoxic Chemical Mutational Studies with a New Program, SnpSift
Pablo Cingolani,Viral M. Patel,M. Coon,Tung T. Nguyen,Susan Land,Douglas M. Ruden,Xiangyi Lu +6 more
TL;DR: It is demonstrated that combining SnpEff and SnpSift can expedite the identification of candidate phenotype-causative mutations in chemically mutagenized Drosophila strains and can also be used to characterize the variety of mutations generated by genotoxic chemicals.
Journal ArticleDOI
Activity-by-contact model of enhancer-promoter regulation from thousands of CRISPR perturbations.
Charles P. Fulco,Charles P. Fulco,Joseph Nasser,Thouis R. Jones,Glen Munson,Drew T. Bergman,Vidya Subramanian,Sharon R. Grossman,Sharon R. Grossman,Rockwell Anyoha,Benjamin R. Doughty,Tejal A. Patwardhan,Tung T. Nguyen,Michael Kane,Elizabeth M. Perez,Neva C. Durand,Caleb A. Lareau,Elena K. Stamenova,Erez Lieberman Aiden,Eric S. Lander,Eric S. Lander,Eric S. Lander,Jesse M. Engreitz,Jesse M. Engreitz +23 more
TL;DR: A simple activity-by-contact model substantially outperformed previous methods at predicting the complex connections in the CRISPR dataset and allows systematic mapping of enhancer–gene connections in a given cell type, on the basis of chromatin-state measurements.
Journal ArticleDOI
Review of influenza A virus in swine worldwide: a call for increased surveillance and research.
Amy L. Vincent,L. Awada,Ian H. Brown,Hualan Chen,Filip Claes,Gwenaelle Dauphin,Ruben O. Donis,Marie R. Culhane,K. Hamilton,Nicola S. Lewis,Elizabeth Mumford,Tung T. Nguyen,S. Parchariyanon,John Pasick,G. Pavade,Ariel Pereda,Malik Peiris,Takehiko Saito,Sabrina L. Swenson,K. Van Reeth,Richard J. Webby,Frank Y. K. Wong,Janice R. Ciacci-Zanella +22 more
TL;DR: The current state of IAV in swine around the world is reviewed, the collaboration between international organizations and a network of laboratories engaged in human and animal IAV surveillance and research is highlighted, and the need to increase information in high‐priority regions is emphasized.
Journal ArticleDOI
Genome-wide enhancer maps link risk variants to disease genes
Joseph Nasser,Drew T. Bergman,Charles P. Fulco,Charles P. Fulco,Philine Guckelberger,Philine Guckelberger,Benjamin R. Doughty,Benjamin R. Doughty,Tejal A. Patwardhan,Tejal A. Patwardhan,Thouis R. Jones,Tung T. Nguyen,Jacob C. Ulirsch,Jacob C. Ulirsch,Fritz Lekschas,Kristy Mualim,Heini M. Natri,Elle M. Weeks,Glen Munson,Michael Kane,Helen Y. Kang,Ang Cui,Ang Cui,John P. Ray,John P. Ray,Thomas Eisenhaure,Ryan L. Collins,Ryan L. Collins,Kushal K. Dey,Hanspeter Pfister,Alkes L. Price,Alkes L. Price,Charles B. Epstein,Anshul Kundaje,Ramnik J. Xavier,Mark J. Daly,Hailiang Huang,Hailiang Huang,Hilary K. Finucane,Hilary K. Finucane,Nir Hacohen,Nir Hacohen,Eric S. Lander,Jesse M. Engreitz,Jesse M. Engreitz +44 more
TL;DR: In this article, the activity-by-contact (ABC) model was applied to create enhancer-gene maps in 131 human cell types and tissues, and use these maps to interpret the functions of GWAS variants.