다중혈관 관상동맥 환자에서 y-문합을 이용하여 양쪽 내흉동맥만을 사용한 우회술의 조기 성적

抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

The calculation of rate coefficients is a discipline of nonlinear science of importance to much of physics, chemistry, engineering, and biology. Fifty years after Kramers' seminal paper on thermally activated barrier crossing, the authors report, extend, and interpret much of our current understanding relating to theories of noise-activated escape, for which many of the notable contributions are originating from the communities both of physics and of physical chemistry. Theoretical as well as numerical approaches are discussed for single- and many-dimensional metastable systems (including fields) in gases and condensed phases. The role of many-dimensional transition-state theory is contrasted with Kramers' reaction-rate theory for moderate-to-strong friction; the authors emphasize the physical situation and the close connection between unimolecular rate theory and Kramers' work for weakly damped systems. The rate theory accounting for memory friction is presented, together with a unifying theoretical approach which covers the whole regime of weak-to-moderate-to-strong friction on the same basis (turnover theory). The peculiarities of noise-activated escape in a variety of physically different metastable potential configurations is elucidated in terms of the mean-first-passage-time technique. Moreover, the role and the complexity of escape in driven systems exhibiting possibly multiple, metastable stationary nonequilibrium states is identified. At lower temperatures, quantum tunneling effects start to dominate the rate mechanism. The early quantum approaches as well as the latest quantum versions of Kramers' theory are discussed, thereby providing a description of dissipative escape events at all temperatures. In addition, an attempt is made to discuss prominent experimental work as it relates to Kramers' reaction-rate theory and to indicate the most important areas for future research in theory and experiment.

Reaction-rate theory: fifty years after Kramers

N G van Kampen 1981 Amsterdam: North-Holland xiv + 419 pp price Dfl 180 This is a book which, at a lower price, could be expected to become an essential part of the library of every physical scientist concerned with problems involving fluctuations and stochastic processes, as well as those who just enjoy a beautifully written book. It provides an extensive graduate-level introduction which is clear, cautious, interesting and readable.

https://iopscience.iop.org/article/10.1088/0031-9112/34/4/040/pdf

Stochastic Processes in Physics and Chemistry

1980 Preface * 1999 Preface * 1999 Acknowledgements * Introduction * 1 Circular Logic * 2 Phase Singularities (Screwy Results of Circular Logic) * 3 The Rules of the Ring * 4 Ring Populations * 5 Getting Off the Ring * 6 Attracting Cycles and Isochrons * 7 Measuring the Trajectories of a Circadian Clock * 8 Populations of Attractor Cycle Oscillators * 9 Excitable Kinetics and Excitable Media * 10 The Varieties of Phaseless Experience: In Which the Geometrical Orderliness of Rhythmic Organization Breaks Down in Diverse Ways * 11 The Firefly Machine 12 Energy Metabolism in Cells * 13 The Malonic Acid Reagent ('Sodium Geometrate') * 14 Electrical Rhythmicity and Excitability in Cell Membranes * 15 The Aggregation of Slime Mold Amoebae * 16 Numerical Organizing Centers * 17 Electrical Singular Filaments in the Heart Wall * 18 Pattern Formation in the Fungi * 19 Circadian Rhythms in General * 20 The Circadian Clocks of Insect Eclosion * 21 The Flower of Kalanchoe * 22 The Cell Mitotic Cycle * 23 The Female Cycle * References * Index of Names * Index of Subjects

https://www.cambridge.org/core/services/aop-cambridge-core/content/view/596B270197FE27DE5FABB598B6210622/S0025557200150892a.pdf/div-class-title-span-class-italic-the-geometry-of-biological-time-span-by-a-t-winfree-pp-544-dm68-corrected-second-printing-1990-isbn-3-540-52528-9-springer-div.pdf

The geometry of biological time , by A. T. Winfree. Pp 544. DM68. Corrected Second Printing 1990. ISBN 3-540-52528-9 (Springer)

The thermodynamic uncertainty relation originally proven for systems driven into a non-equilibrium steady state (NESS) allows one to infer the total entropy production rate by observing any current in the system. This kind of inference scheme is especially useful when the system contains hidden degrees of freedom or hidden discrete states, which are not accessible to the experimentalist. A recent generalization of the thermodynamic uncertainty relation to arbitrary time-dependent driving allows one to infer entropy production not only by measuring current-observables but also by observing state variables. A crucial question then is to understand which observable yields the best estimate for the total entropy production. In this paper we address this question by analyzing the quality of the thermodynamic uncertainty relation for various types of observables for the generic limiting cases of fast driving and slow driving. We show that in both cases observables can be found that yield an estimate of order one for the total entropy production. We further show that the uncertainty relation can even be saturated in the limit of fast driving.

Quality of the Thermodynamic Uncertainty Relation for Fast and Slow Driving

The dynamics of vesicle shape transformations are governed by the competition between curvature energy, geometrical constraints and viscous dissipation in the surrounding liquid. After a discussion of the general principles, three examples illustrate these concepts, (i) Slow conformal diffusion of vesicles of higher genus arises from the invanance of the curvature elasticity with respect to conformal transformations, (ii) spinodal fluctuations indicate the onset of the budding instability, and (iii) the dynamic pearling instability of cylindrical vesicles is caused by the action of laser tweezers.

Dynamics of giant vesicles

Dendrite growth of metal patches on colloidal particles shows a variety of structures depending on the preparation conditions. The morphology of these patches suggests a cross-over from a reaction to a diffusion limited growth, implicating diffusion on the particle surface. Interestingly, the morphological and optical characteristics of the patches continuously change between two limiting behaviors. To understand this growth process, extensive simulations are performed, studying the fractal dimension and the dynamics of growth of a patch on a particle of a finite size, as a function of the initial density and the binding affinity of diffusing tracers. Several important growth regimes are characterized that enable to optimize the pathway for the synthesis of optically active, patchy particles.

Radial Growth in 2D Revisited: The Effect of Finite Density, Binding Affinity, Reaction Rates, and Diffusion

Affinity has proven to be a useful tool for quantifying the non-equilibrium character of time continuous Markov processes since it serves as a measure for the breaking of time reversal symmetry. It has recently been conjectured that the number of coherent oscillations, which is given by the ratio of imaginary and real part of the first non-trivial eigenvalue of the corresponding master matrix, is constrained by the maximum cycle affinity present in the network. In this paper, we conjecture a bound on the whole spectrum of these master matrices that constrains all eigenvalues in a fashion similar to the well known Perron-Frobenius theorem that is valid for any stochastic matrix. As in other studies that are based on affinity-dependent bounds, the limiting process that saturates the bound is given by the asymmetric random walk. For unicyclic networks, we prove that it is not possible to violate the bound by small perturbation of the asymmetric random walk and provide numerical evidence for its validity in randomly generated networks. The results are extended to multicyclic networks, backed up by numerical evidence provided by networks with randomly constructed topology and transition rates.

Affinity-dependent bound on the spectrum of stochastic matrices

The entropy of a thermally isolated system should not decrease after a quench or external driving. For a classical system following Hamiltonian dynamics, we show how this statement emerges for a large system in the sense that the extensive part of the entropy change does not become negative. However, for any finite system and small driving, the mean entropy change can well be negative. We derive these results using as micro-canonical entropy a variant recently introduced by Swendsen and co-workers called ”canonical”. This canonical entropy is the one of a canonical ensemble with the corresponding mean energy. As we show by refining the micro-canonical Crooks relation, the same results hold true for the two more conventional choices of micro-canonical entropy given either by the area of a constant energy shell, the Boltzmann entropy, or the volume underneath it, the Gibbs volume entropy. These results are exemplified with quenched N-dimensional harmonic oscillators.

Udo Seifert

Papers

Quality of the Thermodynamic Uncertainty Relation for Fast and Slow Driving

Dynamics of giant vesicles

Radial Growth in 2D Revisited: The Effect of Finite Density, Binding Affinity, Reaction Rates, and Diffusion

Affinity-dependent bound on the spectrum of stochastic matrices

Entropy and the second law for driven, or quenched, thermally isolated systems