V
Vinita Joardar
Researcher at J. Craig Venter Institute
Publications - 31
Citations - 9419
Vinita Joardar is an academic researcher from J. Craig Venter Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 24, co-authored 29 publications receiving 7514 citations. Previous affiliations of Vinita Joardar include National Institutes of Health & University of Maryland, Baltimore.
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Journal ArticleDOI
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary,Mathew W. Wright,J. Rodney Brister,Stacy Ciufo,Diana Haddad,Richard McVeigh,Bhanu Rajput,Barbara Robbertse,Brian Smith-White,Danso Ako-adjei,Alexander Astashyn,Azat Badretdin,Yiming Bao,Olga Blinkova,Vyacheslav Brover,Vyacheslav Chetvernin,Jinna Choi,Eric Cox,Olga Ermolaeva,Catherine M. Farrell,Tamara Goldfarb,Tripti Gupta,Daniel H. Haft,Eneida L. Hatcher,Wratko Hlavina,Vinita Joardar,Vamsi K. Kodali,Wenjun Li,Donna Maglott,Patrick Masterson,Kelly M. McGarvey,Michael R. Murphy,Kathleen O'Neill,Shashikant Pujar,Sanjida H. Rangwala,Daniel Rausch,Lillian D. Riddick,Conrad L. Schoch,Andrei Shkeda,Susan S. Storz,Hanzhen Sun,Françoise Thibaud-Nissen,Igor Tolstoy,Raymond E. Tully,Anjana R. Vatsan,Craig Wallin,David Webb,Wendy Wu,Melissa J. Landrum,Avi Kimchi,Tatiana Tatusova,Michael DiCuccio,Paul Kitts,Terence Murphy,Kim D. Pruitt +54 more
TL;DR: The approach to utilizing available RNA-Seq and other data types in the authors' manual curation process for vertebrate, plant, and other species is summarized, and a new direction for prokaryotic genomes and protein name management is described.
Journal ArticleDOI
The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
C. Robin Buell,Vinita Joardar,Magdalen Lindeberg,Jeremy D. Selengut,Ian T. Paulsen,Michelle L. Gwinn,Robert J. Dodson,Robert T. DeBoy,A. Scott Durkin,James F. Kolonay,Ramana Madupu,Sean C. Daugherty,Lauren M. Brinkac,Maureen J. Beanan,Daniel H. Haft,William C. Nelson,Tanja M. Davidsen,Nikhat Zafar,Liwei Zhou,Jia Liu,Qiaoping Yuan,Hoda Khouri,Nadia Fedorova,Bao Tran,Daniel A. Russell,Kristi Berry,Teresa Utterback,Susan Van Aken,Tamara Feldblyum,Mark D'Ascenzo,Wen Ling Deng,Adela R. Ramos,James R. Alfano,Samuel W. Cartinhour,Arun K. Chatterjee,Terrence P. Delaney,Sondra G. Lazarowitz,Gregory B. Martin,David J. Schneider,Xiaoyan Tang,Carol L. Bender,Owen White,Claire M. Fraser,Alan Collmer +43 more
TL;DR: The complete genome sequence of the model bacterial pathogen Pseudomonas syringae pathovar tomato DC3000 (DC3000), which is pathogenic on tomato and Arabidopsis thaliana, is reported and 1,159 genes unique to DC3000 are revealed, of which 811 lack a known function.
Journal ArticleDOI
Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
Natalie D. Fedorova,Nora Khaldi,Vinita Joardar,Rama Maiti,Paolo Amedeo,Michael J. Anderson,Jonathan Crabtree,Joana C. Silva,Jonathan H. Badger,Ahmed A. Albarraq,Samuel V. Angiuoli,Howard Bussey,Paul Bowyer,Peter J. Cotty,Paul S. Dyer,Amy Egan,Kevin Galens,Claire M. Fraser-Liggett,Brian J. Haas,Jason M. Inman,Richard Kent,Sébastien Lemieux,Iran Malavazi,Joshua Orvis,Terry Roemer,Catherine M. Ronning,Jaideep P. Sundaram,Granger G. Sutton,G Turner,J. Craig Venter,Owen White,Brett R Whitty,Phil Youngman,Kenneth H. Wolfe,Gustavo H. Goldman,Jennifer R. Wortman,Bo Jiang,David W. Denning,William C. Nierman,William C. Nierman +39 more
TL;DR: The genome sequences of a new clinical isolate of the important human pathogen, Aspergillus fumigatus, A1163, and two closely related but rarely pathogenic species, Neosartorya fischeri NRRL181 and As pergillus clavatus NRRL1 are presented.
Journal ArticleDOI
Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle
Ewen F. Kirkness,Brian J. Haas,Brian J. Haas,Weilin Sun,Henk R. Braig,M. Alejandra Perotti,John M. Clark,Si Hyeock Lee,Hugh M. Robertson,Ryan C. Kennedy,Eran Elhaik,Daniel Gerlach,Daniel Gerlach,Evgenia V. Kriventseva,Evgenia V. Kriventseva,Christine G. Elsik,Christine G. Elsik,Dan Graur,Catherine A. Hill,Jan A. Veenstra,Brian P. Walenz,Jose M. C. Tubio,José M. C. Ribeiro,Julio Rozas,J. Spencer Johnston,Justin T. Reese,Aleksandar Popadić,Marta Tojo,Didier Raoult,David L. Reed,Yoshinori Tomoyasu,Yoshinori Tomoyasu,Emily C. Kraus,Omprakash Mittapalli,Venu M. Margam,Hongmei Li,Jason M. Meyer,Reed M. Johnson,Jeanne Romero-Severson,Janice P. Vanzee,David Alvarez-Ponce,Filipe G. Vieira,Montserrat Aguadé,Sara Guirao-Rico,Juan Manuel Anzola,Kyong Sup Yoon,Joseph P. Strycharz,Maria F. Unger,Scott Christley,Neil F. Lobo,Manfredo J. Seufferheld,NaiKuan Wang,Gregory A. Dasch,Claudio J. Struchiner,Greg Madey,Linda Hannick,Shelby L. Bidwell,Vinita Joardar,Elisabet Caler,Renfu Shao,Stephen C. Barker,Stephen L. Cameron,Robert V. Bruggner,Allison A. Regier,Justin Johnson,Lakshmi D. Viswanathan,T. Utterback,Granger G. Sutton,Daniel Lawson,Robert M. Waterhouse,Robert M. Waterhouse,J. Craig Venter,Robert L. Strausberg,May R. Berenbaum,Frank H. Collins,Evgeny M. Zdobnov,Evgeny M. Zdobnov,Evgeny M. Zdobnov,Barry R. Pittendrigh +78 more
TL;DR: The genome sequences of the body louse and its primary bacterial endosymbiont Candidatus Riesia pediculicola are presented, providing a reference for studies of holometabolous insects.
Journal ArticleDOI
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum
Marco A. van den Berg,Richard Albang,Kaj Albermann,Jonathan H. Badger,Jean-Marc Daran,Arnold J. M. Driessen,Carlos García-Estrada,Natalie D. Fedorova,Diana M. Harris,Wilbert H. M. Heijne,Vinita Joardar,Jan A.K.W. Kiel,Andriy Kovalchuk,Juan F. Martín,William C. Nierman,William C. Nierman,Jeroen G. Nijland,Jack T. Pronk,Johannes Andries Roubos,Ida J. van der Klei,Noël Nicolaas Maria Elisabeth Van Peij,Marten Veenhuis,Hans von Döhren,Christian Wagner,Jennifer R. Wortman,Roel A. L. Bovenberg +25 more
TL;DR: Genes predicted to encode transporters were strongly overrepresented among the genes transcriptionally upregulated under conditions that stimulate penicillinG production, illustrating potential for future genomics-driven metabolic engineering.