V
Vyacheslav Chetvernin
Researcher at National Institutes of Health
Publications - 8
Citations - 9220
Vyacheslav Chetvernin is an academic researcher from National Institutes of Health. The author has contributed to research in topics: Reference genome & Molecular Sequence Annotation. The author has an hindex of 8, co-authored 8 publications receiving 6146 citations.
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Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary,Mathew W. Wright,J. Rodney Brister,Stacy Ciufo,Diana Haddad,Richard McVeigh,Bhanu Rajput,Barbara Robbertse,Brian Smith-White,Danso Ako-adjei,Alexander Astashyn,Azat Badretdin,Yiming Bao,Olga Blinkova,Vyacheslav Brover,Vyacheslav Chetvernin,Jinna Choi,Eric Cox,Olga Ermolaeva,Catherine M. Farrell,Tamara Goldfarb,Tripti Gupta,Daniel H. Haft,Eneida L. Hatcher,Wratko Hlavina,Vinita Joardar,Vamsi K. Kodali,Wenjun Li,Donna Maglott,Patrick Masterson,Kelly M. McGarvey,Michael R. Murphy,Kathleen O'Neill,Shashikant Pujar,Sanjida H. Rangwala,Daniel Rausch,Lillian D. Riddick,Conrad L. Schoch,Andrei Shkeda,Susan S. Storz,Hanzhen Sun,Françoise Thibaud-Nissen,Igor Tolstoy,Raymond E. Tully,Anjana R. Vatsan,Craig Wallin,David Webb,Wendy Wu,Melissa J. Landrum,Avi Kimchi,Tatiana Tatusova,Michael DiCuccio,Paul Kitts,Terence Murphy,Kim D. Pruitt +54 more
TL;DR: The approach to utilizing available RNA-Seq and other data types in the authors' manual curation process for vertebrate, plant, and other species is summarized, and a new direction for prokaryotic genomes and protein name management is described.
Journal ArticleDOI
NCBI prokaryotic genome annotation pipeline
Tatiana Tatusova,Michael DiCuccio,Azat Badretdin,Vyacheslav Chetvernin,Eric P. Nawrocki,Leonid Zaslavsky,Alexandre Lomsadze,Kim D. Pruitt,Mark Borodovsky,James Ostell +9 more
TL;DR: The new NCBI's Prokaryotic Genome Annotation Pipeline (PGAP) relies less on sequence similarity when confident comparative data are available, while it relies more on statistical predictions in the absence of external evidence.
Journal ArticleDOI
RefSeq: an update on prokaryotic genome annotation and curation.
Daniel H. Haft,Michael DiCuccio,Azat Badretdin,Vyacheslav Brover,Vyacheslav Chetvernin,Kathleen O'Neill,Wenjun Li,Farideh Chitsaz,Myra K. Derbyshire,Noreen R. Gonzales,Marc Gwadz,Fu Lu,Gabriele H. Marchler,James S. Song,Narmada Thanki,Roxanne A. Yamashita,Chanjuan Zheng,Françoise Thibaud-Nissen,Lewis Y. Geer,Aron Marchler-Bauer,Kim D. Pruitt +20 more
TL;DR: The Reference Sequence (RefSeq) project at the National Center for Biotechnology Information provides annotation for over 95 000 prokaryotic genomes that meet standards for sequence quality, completeness, and freedom from contamination.
Journal ArticleDOI
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation
Wenjun Li,Kathleen R O’Neill,Daniel H. Haft,Michael DiCuccio,Vyacheslav Chetvernin,Azat Badretdin,George Coulouris,Farideh Chitsaz,Myra K. Derbyshire,A Scott Durkin,Noreen R. Gonzales,Marc Gwadz,Christopher J. Lanczycki,James S. Song,Narmada Thanki,Jiyao Wang,Roxanne A. Yamashita,Mingzhang Yang,Chanjuan Zheng,Aron Marchler-Bauer,Françoise Thibaud-Nissen +20 more
TL;DR: The Reference Sequence (RefSeq) project at the National Center for Biotechnology Information (NCBI) contains nearly 200 000 bacterial and archaeal genomes and 150 million proteins with up-to-date annotation.
Journal ArticleDOI
Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification
TL;DR: The Pairwise Sequence Comparison (PASC) classification tool was created at the National Center for Biotechnology Information and stores pairwise identities for complete genomes/segments of 56 virus families/groups.