W
W. J. Hedley
Researcher at University of Auckland
Publications - 5
Citations - 3357
W. J. Hedley is an academic researcher from University of Auckland. The author has contributed to research in topics: CellML & BioPAX : Biological Pathways Exchange. The author has an hindex of 5, co-authored 5 publications receiving 3189 citations.
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Journal ArticleDOI
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Michael Hucka,Andrew Finney,Herbert M. Sauro,Hamid Bolouri,Hamid Bolouri,John Doyle,Hiroaki Kitano,Adam P. Arkin,Benjamin Bornstein,Dennis Bray,Athel Cornish-Bowden,Autumn A. Cuellar,S. Dronov,E. D. Gilles,Martin Ginkel,V. Gor,Igor Goryanin,W. J. Hedley,T. C. Hodgman,J.-H.S. Hofmeyr,Peter Hunter,Nick Juty,J. L. Kasberger,Andreas Kremling,Ursula Kummer,N Le Novère,Leslie M. Loew,D. Lucio,Pedro Mendes,E. Minch,Eric Mjolsness,Yoichi Nakayama,Melanie R. Nelson,Poul M. F. Nielsen,T. Sakurada,James C. Schaff,Bruce E. Shapiro,Thomas S. Shimizu,H. D. Spence,Jörg Stelling,Koichi Takahashi,Masaru Tomita,John Wagner,J. Wang +43 more
TL;DR: This work summarizes the Systems Biology Markup Language (SBML) Level 1, a free, open, XML-based format for representing biochemical reaction networks, a software-independent language for describing models common to research in many areas of computational biology.
Journal ArticleDOI
A short introduction to CellML
TL;DR: CellML as mentioned in this paper is an XML-based language designed to facilitate the exchange of biological models across the World Wide Web, which is used to describe models as a collection of discrete components linked by connections to form a network.
Journal ArticleDOI
The CellML 1.1 Specification.
Autumn A. Cuellar,W. J. Hedley,Melanie R. Nelson,Catherine M. Lloyd,Matt D. B. Halstead,David Bullivant,David P. Nickerson,Peter Hunter,Poul M. F. Nielsen +8 more
TL;DR: In this article, the authors describe an XML-based language for describing and exchanging models of cellular and subcellular processes, called CellML 1.1, which is used to define the underlying mathematics of models.
Journal Article
A short introduction to CellML
TL;DR: The basic constituents and structure are simple, providing a common basis for describing models and facilitating the creation of complex models from simpler ones by combining models and/or adding detail to existing models.
Book
CellML 1.1 Specification
Per Østergaard Nielsen,Matt D. B. Halstead,David Bullivant,David P. Nickerson,W. J. Hedley,Melanie R. Nelson,Catherine M. Lloyd,Autumn A. Cuellar,Poul M. F. Nielsen,Nickerson Ds +9 more
TL;DR: This document specifies CellML 1.1, an XML-based language for describing and exchanging models of cellular and subcellular processes, and MathML embedded in CellML documents is used to define the underlying mathematics of models.