Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

The Theory of Island Biogeography

So far in this course we have dealt entirely with the evolution of characters that are controlled by simple Mendelian inheritance at a single locus. There are notes on the course website about gametic disequilibrium and how allele frequencies change at two loci simultaneously, but we didn’t discuss them. In every example we’ve considered we’ve imagined that we could understand something about evolution by examining the evolution of a single gene. That’s the domain of classical population genetics. For the next few weeks we’re going to be exploring a field that’s actually older than classical population genetics, although the approach we’ll be taking to it involves the use of population genetic machinery. If you know a little about the history of evolutionary biology, you may know that after the rediscovery of Mendel’s work in 1900 there was a heated debate between the “biometricians” (e.g., Galton and Pearson) and the “Mendelians” (e.g., de Vries, Correns, Bateson, and Morgan). Biometricians asserted that the really important variation in evolution didn’t follow Mendelian rules. Height, weight, skin color, and similar traits seemed to

Human biochemical genetics

▪ Abstract As better phylogenetic hypotheses become available for many groups of organisms, studies in community ecology can be informed by knowledge of the evolutionary relationships among coexisting species. We note three primary approaches to integrating phylogenetic information into studies of community organization: 1. examining the phylogenetic structure of community assemblages, 2. exploring the phylogenetic basis of community niche structure, and 3. adding a community context to studies of trait evolution and biogeography. We recognize a common pattern of phylogenetic conservatism in ecological character and highlight the challenges of using phylogenies of partial lineages. We also review phylogenetic approaches to three emergent properties of communities: species diversity, relative abundance distributions, and range sizes. Methodological advances in phylogenetic supertree construction, character reconstruction, null models for community assembly and character evolution, and metrics of community ...

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Phylogenies and Community Ecology

The increasing availability of phylogenetic data, computing power and informatics tools has facilitated a rapid expansion of studies that apply phylogenetic data and methods to community ecology. Several key areas are reviewed in which phylogenetic information helps to resolve long-standing controversies in community ecology, challenges previous assumptions, and opens new areas of investigation. In particular, studies in phylogenetic community ecology have helped to reveal the multitude of processes driving community assembly and have demonstrated the importance of evolution in the assembly process. Phylogenetic approaches have also increased understanding of the consequences of community interactions for speciation, adaptation and extinction. Finally, phylogenetic community structure and composition holds promise for predicting ecosystem processes and impacts of global change. Major challenges to advancing these areas remain. In particular, determining the extent to which ecologically relevant traits are phylogenetically conserved or convergent, and over what temporal scale, is critical to understanding the causes of community phylogenetic structure and its evolutionary and ecosystem consequences. Harnessing phylogenetic information to understand and forecast changes in diversity and dynamics of communities is a critical step in managing and restoring the Earths biota in a time of rapid global change.

https://projects.au.dk/fileadmin/projects/circe/2009_Cavender_et_al_01.pdf

The merging of community ecology and phylogenetic biology

Gene duplication is an important source of evolutionary novelty Most duplications are of just a single gene, but Ohno proposed that whole-genome duplication (polyploidy) is an important evolutionary mechanism Many duplicate genes have been found in Saccharomyces cerevisiae, and these often seem to be phenotypically redundant Here we show that the arrangement of duplicated genes in the S cerevisiae genome is consistent with Ohno's hypothesis We propose a model in which this species is a degenerate tetraploid resulting from a whole-genome duplication that occurred after the divergence of Saccharomyces from Kluyveromyces Only a small fraction of the genes were subsequently retained in duplicate (most were deleted), and gene order was rearranged by many reciprocal translocations between chromosomes Protein pairs derived from this duplication event make up 13% of all yeast proteins, and include pairs of transcription factors, protein kinases, myosins, cyclins and pheromones Tetraploidy may have facilitated the evolution of anaerobic fermentation in Saccharomyces

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Molecular evidence for an ancient duplication of the entire yeast genome

The late Paleozoic deglaciation is the vegetated Earth9s only recorded icehouse-to-greenhouse transition, yet the climate dynamics remain enigmatic. By using the stable isotopic compositions of soil-formed minerals, fossil-plant matter, and shallow-water brachiopods, we estimated atmospheric partial pressure of carbon dioxide (pCO2) and tropical marine surface temperatures during this climate transition. Comparison to southern Gondwanan glacial records documents covariance between inferred shifts in pCO2, temperature, and ice volume consistent with greenhouse gas forcing of climate. Major restructuring of paleotropical flora in western Euramerica occurred in step with climate and pCO2 shifts, illustrating the biotic impact associated with past CO2-forced turnover to a permanent ice-free world.

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CO2-Forced Climate and Vegetation Instability During Late Paleozoic Deglaciation

Breathtaking in scope, this is the first survey of the entire ecological history of life on land--from the earliest traces of terrestrial organisms over 400 million years ago to the beginning of human agriculture. By providing myriad insights into the unique ecological information contained in the fossil record, it establishes a new and ambitious basis for the study of evolutionary paleoecology of land ecosystems. A joint undertaking of the Evolution of Terrestrial Ecosystems Consortium at the National Museum of Natural History, Smithsonian Institution, and twenty-six additional researchers, this book begins with four chapters that lay out the theoretical background and methodology of the science of evolutionary paleoecology. Included are a comprehensive review of the taphonomy and paleoenvironmental settings of fossil deposits as well as guidelines for developing ecological characterizations of extinct organisms and the communities in which they lived. The remaining three chapters treat the history of terrestrial ecosystems through geological time, emphasizing how ecological interactions have changed, the rate and tempo of ecosystem change, the role of exogenous "forcing factors" in generating ecological change, and the effect of ecological factors on the evolution of biological diversity. The six principal authors of this volume are all associated with the Evolution of Terrestrial Ecosystems program at the National Museum of Natural History, Smithsonian Institution.

Terrestrial Ecosystems Through Time: Evolutionary Paleoecology of Terrestrial Plants and Animals

Terrestrial Ecosystems Through Time

▪ Abstract The Siluro-Devonian primary radiation of land biotas is the terrestrial equivalent of the much-debated Cambrian “explosion” of marine faunas. Both show the hallmarks of novelty radiations (phenotypic diversity increases much more rapidly than species diversity across an ecologically undersaturated and thus low-competition landscape), and both ended with the formation of evolutionary and ecological frameworks analogous to those of modern ecosystems. Profound improvements in understanding early land plant evolution reflect recent liberations from several research constraints: Cladistic techniques plus DNA sequence data from extant relatives have prompted revolutionary reinterpretations of land plant phylogeny, and thus of systematics and character-state acquisition patterns. Biomechanical and physiological experimental techniques developed for extant plants have been extrapolated to fossil species, with interpretations both aided and complicated by the recent knowledge that global landmass positi...

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William A. DiMichele

Papers

CO2-Forced Climate and Vegetation Instability During Late Paleozoic Deglaciation

Terrestrial Ecosystems Through Time: Evolutionary Paleoecology of Terrestrial Plants and Animals

Terrestrial Ecosystems Through Time

EARLY EVOLUTION OF LAND PLANTS: Phylogeny, Physiology, and Ecology of the Primary Terrestrial Radiation

Stratigraphic and interregional changes in Pennsylvanian coal-swamp vegetation: Environmental inferences