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Yifang Hu
Researcher at Walter and Eliza Hall Institute of Medical Research
Publications - 35
Citations - 25473
Yifang Hu is an academic researcher from Walter and Eliza Hall Institute of Medical Research. The author has contributed to research in topics: Haematopoiesis & Cellular differentiation. The author has an hindex of 23, co-authored 34 publications receiving 16561 citations. Previous affiliations of Yifang Hu include University of Melbourne.
Papers
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Journal ArticleDOI
limma powers differential expression analyses for RNA-sequencing and microarray studies
Matthew E. Ritchie,Belinda Phipson,Di Wu,Yifang Hu,Charity W. Law,Wei Shi,Gordon K. Smyth,Gordon K. Smyth +7 more
TL;DR: The philosophy and design of the limma package is reviewed, summarizing both new and historical features, with an emphasis on recent enhancements and features that have not been previously described.
Journal ArticleDOI
ELDA: extreme limiting dilution analysis for comparing depleted and enriched populations in stem cell and other assays.
Yifang Hu,Gordon K. Smyth +1 more
TL;DR: ELDA is a software application for limiting dilution analysis (LDA), with particular attention to the needs of stem cell assays, which is the first limiting dilutions analysis software to provide meaningful confidence intervals for all LDA data sets, including those with 0% or 100% responses.
Journal ArticleDOI
The Molecular Signature of Tissue Resident Memory CD8 T Cells Isolated from the Brain
Linda M. Wakim,Amanda Woodward-Davis,Ruijie Liu,Yifang Hu,Jose A Villadangos,Gordon K. Smyth,Gordon K. Smyth,Michael J. Bevan +7 more
TL;DR: Comparing the gene expression profiles of Trm cells isolated from the brain with those of circulating memory T cellsisolated from the spleen after an acute virus infection indicates that Trm Cells are a distinct memory T cell population disconnected from the circulatingMemory T cell pool and display a unique molecular signature that likely results in optimal survival and function within their local environment.
Journal ArticleDOI
Id2 expression delineates differential checkpoints in the genetic program of CD8α+ and CD103+ dendritic cell lineages.
Jacob T. Jackson,Yifang Hu,Ruijie Liu,Frederick Masson,Angela D'Amico,Sebastian Carotta,Annie Xin,Annie Xin,Mary J Camilleri,Adele M. Mount,Axel Kallies,Axel Kallies,Li Wu,Li Wu,Gordon K. Smyth,Gordon K. Smyth,Stephen L. Nutt,Stephen L. Nutt,Gabrielle T. Belz,Gabrielle T. Belz +19 more
TL;DR: It is shown that Id2 is broadly expressed in all cDC subsets with the highest expression in CD103+ and CD8α+ lineages and that Irf‐8 and Batf3 regulate distinct stages in DC differentiation during the development of cDCs.
Journal ArticleDOI
Opposing roles of polycomb repressive complexes in hematopoietic stem and progenitor cells
Ian J. Majewski,Matthew E. Ritchie,Belinda Phipson,Jason Corbin,Miha Pakusch,Anja Ebert,Meinrad Busslinger,Haruhiko Koseki,Yifang Hu,Gordon K. Smyth,Warren S. Alexander,Douglas J. Hilton,Marnie E. Blewitt +12 more
TL;DR: It is shown that mice with loss of function mutations in PRC2 components display enhanced HSC/progenitor population activity, whereas mutations that disrupt PRC1 or pleiohomeotic repressive complex are associated with HSC or progenitor cell defects.