Y
Yuhan Hao
Researcher at New York University
Publications - 40
Citations - 14982
Yuhan Hao is an academic researcher from New York University. The author has contributed to research in topics: Biology & Shotgun sequencing. The author has an hindex of 11, co-authored 32 publications receiving 4525 citations. Previous affiliations of Yuhan Hao include Fordham University.
Papers
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Journal ArticleDOI
Comprehensive Integration of Single-Cell Data.
Tim Stuart,Andrew Butler,Paul J. Hoffman,Christoph Hafemeister,Efthymia Papalexi,William M. Mauck,Yuhan Hao,Marlon Stoeckius,Peter Smibert,Rahul Satija +9 more
TL;DR: A strategy to "anchor" diverse datasets together, enabling us to integrate single-cell measurements not only across scRNA-seq technologies, but also across different modalities.
Journal ArticleDOI
Integrated analysis of multimodal single-cell data
Yuhan Hao,Stephanie Hao,Erica Andersen-Nissen,William M. Mauck,Shiwei Zheng,Andrew Butler,Maddie Jane Lee,Aaron J. Wilk,Charlotte A. Darby,Michael Zager,Paul Hoffman,Marlon Stoeckius,Efthymia Papalexi,Eleni P. Mimitou,Jaison Jain,Avi Srivastava,Tim Stuart,Lamar M. Fleming,Bertrand Z. Yeung,Angela J. Rogers,Juliana M. McElrath,Catherine A. Blish,Raphael Gottardo,Peter Smibert,Rahul Satija +24 more
TL;DR: Weighted-nearest neighbor analysis as mentioned in this paper is an unsupervised framework to learn the relative utility of each data type in each cell, enabling an integrative analysis of multiple modalities.
Posted ContentDOI
Integrated analysis of multimodal single-cell data
Yuhan Hao,Stephanie Hao,Erica Andersen-Nissen,William M. Mauck,Shiwei Zheng,Andrew Butler,Maddie Jane Lee,Aaron J. Wilk,Charlotte A. Darby,Michael Zagar,Paul Hoffman,Marlon Stoeckius,Efthymia Papalexi,Eleni P. Mimitou,Jaison Jain,Avi Srivastava,Tim Stuart,Lamar Ballweber Fleming,Bertrand Z. Yeung,Angela J. Rogers,Juliana M. McElrath,Catherine A. Blish,Raphael Gottardo,Peter Smibert,Rahul Satija +24 more
TL;DR: ‘weighted-nearest neighbor’ analysis is introduced, an unsupervised framework to learn the relative utility of each data type in each cell, enabling an integrative analysis of multiple modalities.
Journal ArticleDOI
Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells
Eleni P. Mimitou,Caleb A. Lareau,Kelvin Y. Chen,Kelvin Y. Chen,Andre Luiz Zorzetto-Fernandes,Yuhan Hao,Yusuke Takeshima,Wendy Luo,Tse Shun Huang,Bertrand Z. Yeung,Efthymia Papalexi,Pratiksha I. Thakore,Tatsuya Kibayashi,James B. Wing,Mayu Hata,Rahul Satija,Kristopher L. Nazor,Shimon Sakaguchi,Shimon Sakaguchi,Leif S. Ludwig,Leif S. Ludwig,Leif S. Ludwig,Vijay G. Sankaran,Vijay G. Sankaran,Aviv Regev,Peter Smibert +25 more
TL;DR: ASAP-seq as discussed by the authors uses a bridging approach that repurposes antibody:oligonucleotide conjugates designed for existing technologies that pair protein measurements with single-cell RNA sequencing.
Journal ArticleDOI
Periodontal pathogens are a risk factor of oral cavity squamous cell carcinoma, independent of tobacco and alcohol and human papillomavirus.
Ian Ganly,Liying Yang,Rachel Giese,Yuhan Hao,Carlos W. Nossa,Luc G. T. Morris,Matthew Rosenthal,Jocelyn C. Migliacci,Dervla Kelly,Wenzhi Tseng,Jiyuan Hu,Huilin Li,Stuart M. Brown,Zhiheng Pei,Zhiheng Pei +14 more
TL;DR: The findings suggest an association between periodontal pathogens and OC‐SCC in non smoking HPV negative patients, and the oral microbiome was classified into two types.