Yuming Jiang

Bio: Yuming Jiang is an academic researcher from University of Electronic Science and Technology of China. The author has contributed to research in topics: Computer science & Artificial intelligence. The author has an hindex of 3, co-authored 6 publications receiving 70 citations. Previous affiliations of Yuming Jiang include Chinese Academy of Sciences.

JointRCNN: A Region-Based Convolutional Neural Network for Optic Disc and Cup Segmentation

Abstract: Objective: The purpose of this paper is to propose a novel algorithm for joint optic disc and cup segmentation, which aids the glaucoma detection. Methods: By assuming the shapes of cup and disc regions to be elliptical, we proposed an end-to-end region-based convolutional neural network for joint optic disc and cup segmentation (referred to as JointRCNN). Atrous convolution is introduced to boost the performance of feature extraction module. In JointRCNN, disc proposal network (DPN) and cup proposal network (CPN) are proposed to generate bounding box proposals for the optic disc and cup, respectively. Given the prior knowledge that the optic cup is located in the optic disc, disc attention module is proposed to connect DPN and CPN, where a suitable bounding box of the optic disc is first selected and then continued to be propagated forward as the basis for optic cup detection in our proposed network. After obtaining the disc and cup regions, which are the inscribed ellipses of the corresponding detected bounding boxes, the vertical cup-to-disc ratio is computed and used as an indicator for glaucoma detection. Results: Comprehensive experiments clearly show that our JointRCNN model outperforms state-of-the-art methods for optic disc and cup segmentation task and glaucoma detection task. Conclusion: Joint optic disc and cup segmentation, which utilizes the connection between optic disc and cup, could improve the performance of optic disc and cup segmentation. Significance: The proposed method improves the accuracy of glaucoma detection. It is promising to be used for glaucoma screening.

DeepDisc: Optic Disc Segmentation Based on Atrous Convolution and Spatial Pyramid Pooling

Abstract: The optic disc (OD) segmentation is an important step for fundus image base disease diagnosis In this paper, we propose a novel and effective method called DeepDisc to segment the OD It mainly contains two components: atrous convolution and spatial pyramid pooling The atrous convolution adjusts filter’s field-of-view and controls the resolution of features In addition, the spatial pyramid pooling module probes convolutional features at multiple scales and encodes global context information Both of them are used to further boost OD segmentation performance Finally, we demonstrate that our DeepDisc system achieves state-of-the-art disc segmentation performance on the ORIGA and Messidor datasets without any post-processing strategies, such as dense conditional random field

Optic Disc and Cup Segmentation with Blood Vessel Removal from Fundus Images for Glaucoma Detection

Abstract: Glaucoma is one of the major causes of blindness. Researchers keep looking for better ways to detect glaucoma in its early stage before it gets worse and cannot be cured. Among existing methods, the vertical cup to disc ratio (CDR) has been found to be effective for glaucoma measurement, which is calculated from the diameters of the optic cup and disc regions. Therefore, in order to achieve a more accurate CDR, a good segmentation of the optic disc and cup regions is quite important. Noting that the shape of the disc and cup regions can be assumed to be an ellipse, in this work we propose to find the minimal bounding boxes for the two regions based on the recent advances of deep learning. Also, considering blood vessels, passing through the disc area in a fundus image, can affect the detection of the bounding boxes, we further propose to remove the blood vessels beforehand in order to further boost the overall performance. Comprehensive experiments show that our proposed method achieves state-of-the-art performance on ORIGA-650 for optic disc and cup segmentation.

Large-Scale Left and Right Eye Classification in Retinal Images

Abstract: Left and right eye information is an important priori for automatic retinal fundus image analysis. However, such information is often not available or even wrongly provided in many datasets. In this work, we spend a considerable amount of efforts in manually annotating the left and right eyes from the large-scale Kaggle Diabetic Retinopathy dataset consisting of 88,702 fundus images, based on our developed online labeling system. With the newly annotated large-scale dataset, we also train classification models based on convolutional neural networks to discriminate left and right eyes in fundus images. As experimentally evaluated on the Kaggle and Origa dataset, our trained deep learning models achieve 99.90% and 99.23% in term of classification accuracy, respectively, which can be considered for practical use.

Semantic segmentation of COVID-19 lesions with a multiscale dilated convolutional network

Abstract: Automatic segmentation of infected lesions from computed tomography (CT) of COVID-19 patients is crucial for accurate diagnosis and follow-up assessment. The remaining challenges are the obvious scale difference between different types of COVID-19 lesions and the similarity between the lesions and normal tissues. This work aims to segment lesions of different scales and lesion boundaries correctly by utilizing multiscale and multilevel features. A novel multiscale dilated convolutional network (MSDC-Net) is proposed against the scale difference of lesions and the low contrast between lesions and normal tissues in CT images. In our MSDC-Net, we propose a multiscale feature capture block (MSFCB) to effectively capture multiscale features for better segmentation of lesions at different scales. Furthermore, a multilevel feature aggregate (MLFA) module is proposed to reduce the information loss in the downsampling process. Experiments on the publicly available COVID-19 CT Segmentation dataset demonstrate that the proposed MSDC-Net is superior to other existing methods in segmenting lesion boundaries and large, medium, and small lesions, and achieves the best results in Dice similarity coefficient, sensitivity and mean intersection-over-union (mIoU) scores of 82.4%, 81.1% and 78.2%, respectively. Compared with other methods, the proposed model has an average improvement of 10.6% and 11.8% on Dice and mIoU. Compared with the existing methods, our network achieves more accurate segmentation of lesions at various scales and lesion boundaries, which will facilitate further clinical analysis. In the future, we consider integrating the automatic detection and segmentation of COVID-19, and conduct research on the automatic diagnosis system of COVID-19.

CE-Net: Context Encoder Network for 2D Medical Image Segmentation

Abstract: Medical image segmentation is an important step in medical image analysis. With the rapid development of a convolutional neural network in image processing, deep learning has been used for medical image segmentation, such as optic disc segmentation, blood vessel detection, lung segmentation, cell segmentation, and so on. Previously, U-net based approaches have been proposed. However, the consecutive pooling and strided convolutional operations led to the loss of some spatial information. In this paper, we propose a context encoder network (CE-Net) to capture more high-level information and preserve spatial information for 2D medical image segmentation. CE-Net mainly contains three major components: a feature encoder module, a context extractor, and a feature decoder module. We use the pretrained ResNet block as the fixed feature extractor. The context extractor module is formed by a newly proposed dense atrous convolution block and a residual multi-kernel pooling block. We applied the proposed CE-Net to different 2D medical image segmentation tasks. Comprehensive results show that the proposed method outperforms the original U-Net method and other state-of-the-art methods for optic disc segmentation, vessel detection, lung segmentation, cell contour segmentation, and retinal optical coherence tomography layer segmentation.

CE-Net: Context Encoder Network for 2D Medical Image Segmentation

Abstract: Medical image segmentation is an important step in medical image analysis. With the rapid development of convolutional neural network in image processing, deep learning has been used for medical image segmentation, such as optic disc segmentation, blood vessel detection, lung segmentation, cell segmentation, etc. Previously, U-net based approaches have been proposed. However, the consecutive pooling and strided convolutional operations lead to the loss of some spatial information. In this paper, we propose a context encoder network (referred to as CE-Net) to capture more high-level information and preserve spatial information for 2D medical image segmentation. CE-Net mainly contains three major components: a feature encoder module, a context extractor and a feature decoder module. We use pretrained ResNet block as the fixed feature extractor. The context extractor module is formed by a newly proposed dense atrous convolution (DAC) block and residual multi-kernel pooling (RMP) block. We applied the proposed CE-Net to different 2D medical image segmentation tasks. Comprehensive results show that the proposed method outperforms the original U-Net method and other state-of-the-art methods for optic disc segmentation, vessel detection, lung segmentation, cell contour segmentation and retinal optical coherence tomography layer segmentation.

JointRCNN: A Region-Based Convolutional Neural Network for Optic Disc and Cup Segmentation

Abstract: Objective: The purpose of this paper is to propose a novel algorithm for joint optic disc and cup segmentation, which aids the glaucoma detection. Methods: By assuming the shapes of cup and disc regions to be elliptical, we proposed an end-to-end region-based convolutional neural network for joint optic disc and cup segmentation (referred to as JointRCNN). Atrous convolution is introduced to boost the performance of feature extraction module. In JointRCNN, disc proposal network (DPN) and cup proposal network (CPN) are proposed to generate bounding box proposals for the optic disc and cup, respectively. Given the prior knowledge that the optic cup is located in the optic disc, disc attention module is proposed to connect DPN and CPN, where a suitable bounding box of the optic disc is first selected and then continued to be propagated forward as the basis for optic cup detection in our proposed network. After obtaining the disc and cup regions, which are the inscribed ellipses of the corresponding detected bounding boxes, the vertical cup-to-disc ratio is computed and used as an indicator for glaucoma detection. Results: Comprehensive experiments clearly show that our JointRCNN model outperforms state-of-the-art methods for optic disc and cup segmentation task and glaucoma detection task. Conclusion: Joint optic disc and cup segmentation, which utilizes the connection between optic disc and cup, could improve the performance of optic disc and cup segmentation. Significance: The proposed method improves the accuracy of glaucoma detection. It is promising to be used for glaucoma screening.