Yuri S. Kivshar

Bio: Yuri S. Kivshar is an academic researcher from Australian National University. The author has contributed to research in topics: Metamaterial & Soliton. The author has an hindex of 126, co-authored 1845 publications receiving 79415 citations. Previous affiliations of Yuri S. Kivshar include Technische Universität Darmstadt & Los Alamos National Laboratory.

Non-Hermitian trimers: PT-symmetry versus pseudo-Hermiticity

Abstract: We study a structure composed of three coupled waveguides with gain and loss, a non-Hermitian trimer. We demonstrate that the mode spectrum can be entirely real if the waveguides are placed in a special order and at certain distances between each other. Such structures generally lack a spatial symmetry, in contrast to parity-time symmetric trimers which are known to feature a real spectrum. We also determine a threshold for wave amplification and analyse the scattering properties of such non-conservative systems embedded into a chain of conservative waveguides.

Wave scattering by metamaterial wedges and interfaces

Abstract: We outline specific features of numerical simulations of metamaterial wedges and interfaces. We study the effect of different positioning of a grid in the Yee method, which is necessary to obtain consistent convergence in modelling of interfaces with metamaterials characterized by negative dielectric permittivity and negative magnetic permeability. We demonstrate however that, in the framework of the continuous-medium approximation, wave scattering on the wedge may result in a resonant excitation of waves with infinitely large spatial frequencies, leading to non-convergence of the simulation results that depend on the discretization step. Copyright © 2006 John Wiley & Sons, Ltd.

Spontaneous knotting of self-trapped waves

Abstract: We describe theory and simulations of a spinning optical soliton whose propagation spontaneously excites knotted and linked optical vortices. The nonlinear phase of the self-trapped light beam breaks the wave front into a sequence of optical vortex loops around the soliton, which, through the soliton's orbital angular momentum and spatial twist, tangle on propagation to form links and knots. We anticipate similar spontaneous knot topology to be a universal feature of waves whose phase front is twisted and nonlinearly modulated, including superfluids and trapped matter waves.

Vortex-stripe soliton interactions

Abstract: Summary form only given. Recently, different types of the soliton transverse instabilities have been observed experimentally for photorefractive, saturable gaseous, and quadratic media. In particular, Tikhonenko et al. reported the observation of pairs of optical vortex solitons generated due to the transverse instability of a dark-soliton stripe. Here, we study a different scenario of the soliton instabilities and put the following question: What is a result of interaction of dark solitons of different dimensions, i.e. a (1+1)-dimensional dark soliton (dark-soliton stripe) and a (2+1)-dimensional dark soliton of radial symmetry (vortex soliton)?.

Generation of optical bottle beams by incoherent white-light vortices

Abstract: We generate experimentally optical bottle beams from incoherent double-charge white-light vortices, and show that their parameters can be efficiently controlled by varying the beam focusing conditions.

I and i

Abstract: There is, I think, something ethereal about i —the square root of minus one. I remember first hearing about it at school. It seemed an odd beast at that time—an intruder hovering on the edge of reality. Usually familiarity dulls this sense of the bizarre, but in the case of i it was the reverse: over the years the sense of its surreal nature intensified. It seemed that it was impossible to write mathematics that described the real world in …

Fast parallel algorithms for short-range molecular dynamics

Abstract: Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dynamics models which can be difficult to parallelize efficiently—those with short-range forces where the neighbors of each atom change rapidly. They can be implemented on any distributed-memory parallel machine which allows for message-passing of data between independently executing processors. The algorithms are tested on a standard Lennard-Jones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers--the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray Y-MP and C90 algorithm shows that the current generation of parallel machines is competitive with conventional vector supercomputers even for small problems. For large problems, the spatial algorithm achieves parallel efficiencies of 90% and a 1840-node Intel Paragon performs up to 165 faster than a single Cray C9O processor. Trade-offs between the three algorithms and guidelines for adapting them to more complex molecular dynamics simulations are also discussed.

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。