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Yvan Saeys
Researcher at Ghent University
Publications - 288
Citations - 25405
Yvan Saeys is an academic researcher from Ghent University. The author has contributed to research in topics: Feature selection & Gene. The author has an hindex of 61, co-authored 256 publications receiving 18499 citations. Previous affiliations of Yvan Saeys include University of the Basque Country & Boston University.
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Journal ArticleDOI
A review of feature selection techniques in bioinformatics
TL;DR: A basic taxonomy of feature selection techniques is provided, providing their use, variety and potential in a number of both common as well as upcoming bioinformatics applications.
Wisdom of crowds for robust gene network inference
Daniel Marbach,James C. Costello,Robert Küffner,Nicole M. Vega,Robert J. Prill,Diogo M. Camacho,Kyle R. Allison,Andrej Aderhold,Richard Bonneau,Yukun Chen,James J. Collins,Francesca Cordero,Martin Crane,Frank Dondelinger,Mathias Drton,Roberto Esposito,Rina Foygel,Alberto de la Fuente,Jan Gertheiss,Pierre Geurts,Alex Greenfield,Marco Grzegorczyk,Anne-Claire Haury,Benjamin Holmes,Torsten Hothorn,Dirk Husmeier,Vân Anh Huynh-Thu,Alexandre Irrthum,Manolis Kellis,Guy Karlebach,Sophie Lèbre,Vincenzo De Leo,Aviv Madar,Subramani Mani,Fantine Mordelet,Harry Ostrer,Zhengyu Ouyang,Ravi Pandya,Tobias Petri,Andrea Pinna,Christopher S. Poultney,Serena Rezny,Heather J. Ruskin,Yvan Saeys,Ron Shamir,Alina Sîrbu,Mingzhou Song,Nicola Soranzo,Alexander Statnikov,Gustavo Stolovitzky,Nicci Vega,Paola Vera-Licona,Jean-Philippe Vert,Alessia Visconti,Haizhou Wang,Louis Wehenkel,Lukas Windhager,Yang Zhang,Ralf Zimmer +58 more
TL;DR: A comprehensive blind assessment of over 30 network inference methods on Escherichia coli, Staphylococcus aureus, Saccharomyces cerevisiae and in silico microarray data defines the performance, data requirements and inherent biases of different inference approaches, and provides guidelines for algorithm application and development.
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FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data.
Sofie Van Gassen,Sofie Van Gassen,Britt Callebaut,Mary J. van Helden,Bart N. Lambrecht,Piet Demeester,Tom Dhaene,Yvan Saeys +7 more
TL;DR: A new visualization technique is introduced, called FlowSOM, which analyzes Flow or mass cytometry data using a Self‐Organizing Map, using a two‐level clustering and star charts, to obtain a clear overview of how all markers are behaving on all cells, and to detect subsets that might be missed otherwise.
Journal ArticleDOI
A comparison of single-cell trajectory inference methods.
TL;DR: The authors comprehensively benchmark the accuracy, scalability, stability and usability of 45 single-cell trajectory inference methods and develop a set of guidelines to help users select the best method for their dataset.
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Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features
Evelyne Derelle,Conchita Ferraz,Stephane Rombauts,Pierre Rouzé,Alexandra Z. Worden,Steven Robbens,Frédéric Partensky,Sven Degroeve,Sophie Echeynié,Richard G. Cooke,Yvan Saeys,Jan Wuyts,Kamel Jabbari,Chris Bowler,Olivier Panaud,Benoît Piégu,Steven G. Ball,Jean-Philippe Ral,François-Yves Bouget,Gwenael Piganeau,Bernard De Baets,André Picard,Michel Delseny,Jacques G. Demaille,Yves Van de Peer,Hervé Moreau +25 more
TL;DR: The complete genome sequence of an ancient member of this lineage, the unicellular green alga Ostreococcus tauri, is unveiled, making O. tauri an ideal model system for research on eukaryotic genome evolution, including chromosome specialization and green lineage ancestry.