Z
Zhaoxi Ke
Researcher at National Institutes of Health
Publications - 4
Citations - 6094
Zhaoxi Ke is an academic researcher from National Institutes of Health. The author has contributed to research in topics: Conserved Domain Database & Entrez. The author has an hindex of 4, co-authored 4 publications receiving 5776 citations.
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CDD: a Conserved Domain Database for the functional annotation of proteins
Aron Marchler-Bauer,Shennan Lu,John B. Anderson,Farideh Chitsaz,Myra K. Derbyshire,Carol DeWeese-Scott,Jessica H. Fong,Lewis Y. Geer,Renata C. Geer,Noreen R. Gonzales,Marc Gwadz,David I. Hurwitz,John D. Jackson,Zhaoxi Ke,Christopher J. Lanczycki,Fu-Ping Lu,Gabriele H. Marchler,Mikhail Mullokandov,Marina V. Omelchenko,Cynthia L. Robertson,James S. Song,Narmada Thanki,Roxanne A. Yamashita,Dachuan Zhang,Naigong Zhang,Chanjuan Zheng,Stephen H. Bryant +26 more
TL;DR: NCBI’s Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from these footprints.
Journal ArticleDOI
CDD: a Conserved Domain Database for protein classification
Aron Marchler-Bauer,John B. Anderson,Praveen F. Cherukuri,Carol DeWeese-Scott,Lewis Y. Geer,Marc Gwadz,Siqian He,David I. Hurwitz,John D. Jackson,Zhaoxi Ke,Christopher J. Lanczycki,Cynthia A. Liebert,Chunlei Liu,Fu Lu,Gabriele H. Marchler,Mikhail Mullokandov,Benjamin A. Shoemaker,Vahan Simonyan,James S. Song,Paul A. Thiessen,Roxanne A. Yamashita,Jodie J. Yin,Dachuan Zhang,Stephen H. Bryant +23 more
TL;DR: The progress of the curation effort and associated improvements in the functionality of the CDD information retrieval system are reported on.
Journal ArticleDOI
CDD: specific functional annotation with the Conserved Domain Database.
Aron Marchler-Bauer,John B. Anderson,Farideh Chitsaz,Myra K. Derbyshire,Carol DeWeese-Scott,Jessica H. Fong,Lewis Y. Geer,Renata C. Geer,Noreen R. Gonzales,Marc Gwadz,Siqian He,David I. Hurwitz,John D. Jackson,Zhaoxi Ke,Christopher J. Lanczycki,Cynthia A. Liebert,Chunlei Liu,Fu-er Lu,Shennan Lu,Gabriele H. Marchler,Mikhail Mullokandov,James S. Song,Asba Tasneem,Narmada Thanki,Roxanne A. Yamashita,Dachuan Zhang,Naigong Zhang,Stephen H. Bryant +27 more
TL;DR: NCBI's Conserved Domain Database is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution, and provides annotation of domain footprints and conserved functional sites on protein sequences.
Journal ArticleDOI
CDD: a conserved domain database for interactive domain family analysis
Aron Marchler-Bauer,John B. Anderson,Myra K. Derbyshire,Carol DeWeese-Scott,Noreen R. Gonzales,Marc Gwadz,Luning Hao,Siqian He,David I. Hurwitz,John D. Jackson,Zhaoxi Ke,Dmitri M. Krylov,Christopher J. Lanczycki,Cynthia A. Liebert,Chunlei Liu,Fu Lu,Shennan Lu,Gabriele H. Marchler,Mikhail Mullokandov,James S. Song,Narmada Thanki,Roxanne A. Yamashita,Jodie J. Yin,Dachuan Zhang,Stephen H. Bryant +24 more
TL;DR: A novel helper application, CDTree, is presented, which enables users of the CDD resource to examine curated hierarchies and serve as a powerful tool in protein classification, as they allow users to analyze protein sequences in the context of domain family hierarchies.