Showing papers by "Agriculture and Agri-Food Canada published in 2009"

Soil organic carbon pools in the northern circumpolar permafrost region

Abstract: of all soils in the northern permafrost region is approximately 18,782 � 10 3 km 2 ,o r approximately 16% of the global soil area. In the northern permafrost region, organic soils (peatlands) and cryoturbated permafrost-affected mineral soils have the highest mean soil organic carbon contents (32.2–69.6 kg m �2 ). Here we report a new estimate of the carbon pools in soils of the northern permafrost region, including deeper layers and pools not accounted for in previous analyses. Carbon pools were estimated to be 191.29 Pg for the 0–30 cm depth, 495.80 Pg for the 0–100 cm depth, and 1024.00 Pg for the 0–300 cm depth. Our estimate for the first meter of soil alone is about double that reported for this region in previous analyses. Carbon pools in layers deeper than 300 cm were estimated to be 407 Pg in yedoma deposits and 241 Pg in deltaic deposits. In total, the northern permafrost region contains approximately 1672 Pg of organic carbon, of which approximately 1466 Pg, or 88%, occurs in perennially frozen soils and deposits. This 1672 Pg of organic carbon would account for approximately 50% of the estimated global belowground organic carbon pool.

Seaweed Extracts as Biostimulants of Plant Growth and Development

Abstract: Marine algal seaweed species are often regarded as an underutilized bioresource, many have been used as a source of food, industrial raw materials, and in therapeutic and botanical applications for centuries. Moreover, seaweed and seaweed-derived products have been widely used as amendments in crop production systems due to the presence of a number of plant growth-stimulating compounds. However, the biostimulatory potential of many of these products has not been fully exploited due to the lack of scientific data on growth factors present in seaweeds and their mode of action in affecting plant growth. This article provides a comprehensive review of the effect of various seaweed species and seaweed products on plant growth and development with an emphasis on the use of this renewable bioresource in sustainable agricultural systems.

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015).

Abstract: Changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses in February 2015 are listed.

New Insights into Peritrophic Matrix Synthesis, Architecture, and Function

Abstract: The peritrophic matrix (PM) is a chitin and glycoprotein layer that lines the invertebrate midgut. Although structurally different, it is functionally similar to the mucous secretions of the vertebrate digestive tract. The PM is a physical barrier, protecting the midgut epithelium from abrasive food particles, digestive enzymes, and pathogens infectious per os. It is also a biochemical barrier, sequestering and, in some cases, inactivating ingested toxins. Finally, the PM compartmentalizes digestive processes, allowing for efficient nutrient acquisition and reuse of hydrolytic enzymes. The PM consists of an organized lattice of chitin fibrils held together by chitin binding proteins. Glycans fill the interstitial spaces, creating a molecular sieve, the properties of which are dependent on the immediate ion content and pH. In this review, we have integrated recent structural and functional information to create a holistic model for the PM. We also show how this information may generate novel technologies for use in insect pest management.

Progress towards DNA barcoding of fungi.

Abstract: The use of DNA sequences for identifying fungi and fungus-like organisms predates the DNA barcoding movement by at least 10 years. A brief overview of the mycological shift from phenotypic to molecular taxonomy is provided. Exploration of the animal barcode marker, cytochrome oxidase 1, by Canadian mycologists has been fruitful for some fungi, but intron issues and lack of resolution in other taxa prevent its universal application. The momentum established by 15 years of research on the fungal nuclear ribosomal internal transcribed spacer (ITS) sequences will lead to a proposal to the Consortium for the Barcode of Life on the adoption of this marker as the fungal barcode. Existing mycological research networks should facilitate the rapid development of DNA barcoding of fungi once the marker issue is settled. Some available online fungal identification databases are briefly described.

Advances in Ultraviolet Light Technology for Non-thermal Processing of Liquid Foods

Abstract: A negative, public reaction is growing over the addition of chemical preservatives to liquid foods and beverages to extend their shelf life and to protect against foodborne pathogens. As a physical method, ultraviolet light (UV) irradiation has a positive consumer image and is of interest to the food industry as a low cost non-thermal method of preservation. Recent advances in the science and engineering of UV light irradiation have demonstrated that this technology holds considerable promise as an alternative to traditional thermal pasteurization for liquid foods and ingredients, fresh juices, soft drinks, and beverages. However, its use for treating foods is still limited due to low UV transmittance of liquid foods. The goal of this review is to provide a summary of the basic principles of UV light generation and propagation with emphasis on its applications for liquid food processing. The review includes information on critical product and process factors that affect UV light inactivation and consequently the delivery of a required scheduled process in liquids foods; measuring and modeling of UV inactivation, and the important effects of UV light on overall quality and nutritional value of liquid foods. The commercially available UV light sources and UV reactor designs that were used for liquid foods treatment are reviewed. The research priorities and challenges that need to be addressed for the successful development of UV technology for liquid foods treatment are discussed.

Arabidopsis homolog of the yeast TREX‐2 mRNA export complex: components and anchoring nucleoporin

Abstract: Nuclear pore complexes (NPCs) are vital to nuclear-cytoplasmic communication in eukaryotes. The yeast NPC-associated TREX-2 complex, also known as the Thp1-Sac3-Cdc31-Sus1 complex, is anchored on the NPC via the nucleoporin Nup1, and is essential for mRNA export. Here we report the identification and characterization of the putative Arabidopsis thaliana TREX-2 complex and its anchoring nucleoporin. Physical and functional evidence support the identification of the Arabidopsis orthologs of yeast Thp1 and Nup1. Of three Arabidopsis homologs of yeast Sac3, two are putative TREX-2 components, but, surprisingly, none are required for mRNA export as they are in yeast. Physical association of the two Cdc31 homologs, but not the Sus1 homolog, with the TREX-2 complex was observed. In addition to identification of these TREX-2 components, direct interactions of the Arabidopsis homolog of DSS1, which is an established proteasome component in yeast and animals, with both the TREX-2 complex and the proteasome were observed. This suggests the possibility of a link between the two complexes. Thus this work has identified the putative Arabidopsis TREX-2 complex and provides a foundation for future studies of nuclear export in Arabidopsis.

Integration of optical and Synthetic Aperture Radar (SAR) imagery for delivering operational annual crop inventories

Abstract: Agriculture plays a critical role within Canada’s economy and, as such, sustainability of this sector is of high importance. Targeting and monitoring programs designed to promote economic and environmental sustainability are a vital component within Canada’s agricultural policy. A hierarchy of land information, including up to date information on cropping practices, is needed to measure the impacts of programs on land use decision-making and to gauge the environmental and economic benefits of these investments. A multi-year, multi-site research activity was completed to develop a robust methodology to inventory crops across Canada’s large and diverse agricultural landscapes. To move towards operational implementation the methodology must deliver accurate crop inventories, with consistency and reliability. In order to meet these operational requirements and to mitigate risk associated with reliance on a single data source, the methodology integrated both optical and Synthetic Aperture Radar (SAR) imagery. The results clearly demonstrated that multi-temporal satellite data can successfully classify crops for a variety of cropping systems present across Canada. Overall accuracies of at least 85% were achieved, and most major crops were also classified to this level of accuracy. Although multi-temporal optical data would be the preferred data source for crop classification, a SAR-optical dataset (two Envisat ASAR images and one optical image) provided acceptable accuracies and will mitigate risk associated with operational implementation. The preferred dual-polarization mode would be VV–VH. Not only were these promising classification results repeated year after year, but the target accuracies were met consistently for multiple sites across Canada, all with varying cropping systems.

Strategies to Make Use of Plant Sensors-Based Diagnostic Information for Nitrogen Recommendations

Abstract: Improvements of nitrogen use efficiency (NUE) may be achieved through the use of sensing tools for N status determination Leaf and canopy chlorophyll, as well as leaf polyphenolics concentrations, are characteristics strongly affected by N availability that are often used as a surrogate to direct plant N status estimation Approaches with near-term operational sensors, handheld and tractor-mounted, for proximal remote measurements are considered in this review However, the information provided by these tools is unfortunately biased by factors other than N To overcome this obstacle, normalization procedures such as the well-fertilized reference plot, the no-N reference plot, and relative yield are often used Methods to establish useful relationships between sensor readings and optimal N rates, such as critical NSI (nitrogen sufficiency index), INSEY (in-season estimated yield), and the relationship between chlorophyll meter readings, grain yield, and sensor-determined CI (chlorophyll index) are also reviewed In a few cases, algorithms for translating readings into actual N fertilizer recommendation have been developed, but their value still seems limited to conditions similar to the ones where the research was conducted Near-term operational sensing can benefit from improvements in sensor operational characteristics (size and shape of footprint, positioning) or the choice of light wavebands more suitable for specific conditions (ie, genotype, growth stage, or crop density) However, one important limitation to their widespread use is the availability of algorithms that would be reliable in a variety of soil and weather conditions

Compaction effects on CO2 and N2O production during drying and rewetting of soil

Abstract: The effects of compaction on soil porosity and soil water relations are likely to influence substrate availability and microbial activity under fluctuating soil moisture conditions We conducted a short laboratory incubation to investigate the effects of soil compaction on substrate availability and biogenic gas (CO 2 and N 2 O) production during the drying and rewetting of a fine-loamy soil Prior to initiating the drying and wetting treatments, CO 2 production (−10 kPa soil water content) from uncompacted soil was 23 times that of compacted soil and corresponded with higher concentrations of microbial biomass C (MBC) and dissolved organic C (DOC) In contrast, N 2 O production was 67 times higher in compacted than uncompacted soil at field capacity Soil aeration rather than substrate availability (eg NO 3 − and DOC) appeared to be the most important factor affecting N 2 O production during this phase The drying of compacted soil resulted in an initial increase in CO 2 production and a nearly two-fold higher average rate of C mineralization at maximum dryness (owing to a higher water-filled pore space [WFPS]) compared to uncompacted soil During the drying phase, N 2 O production was markedly reduced (by 93–96%) in both soils, though total N 2 O production remained slightly higher in compacted than uncompacted soil The increase in CO 2 production during the first 24 h following rewetting of dry soil was about 25 times higher in uncompacted soil and corresponded with a much greater release of DOC than in compacted soil MBC appeared to be the source of the DOC released from uncompacted soil but not from compacted soil The production of N 2 O during the first 24 h following rewetting of dry soil was nearly 20 times higher in compacted than uncompacted soil Our results suggest that N 2 O production from compacted soil was primarily the result of denitrification, which was limited by substrates (especially NO 3 − ) made available during drying and rewetting and occurred rapidly after the onset of anoxic conditions during the rewetting phase In contrast, N 2 O production from uncompacted soil appeared to be primarily the product of nitrification that was largely associated with an accumulation of NO 3 − following rewetting of dry soil Irrespective of compaction, the response to drying and rewetting was greater for N 2 O production than for CO 2 production

Detection of Virulence to Resistance Gene Sr36 Within the TTKS Race Lineage of Puccinia graminis f. sp. tritici

Abstract: The stem rust resistance gene Sr36 confers a near-immune resistance reaction to many races of Puccinia graminis f. sp. tritici and is highly effective against race TTKSK (syn. Ug99), which possesses unusually broad virulence combinations. Because this gene is widely used in United States soft winter wheat germplasm and cultivars, it has been considered to be an important source of resistance to TTKSK. In 2007, moderately susceptible infection responses were observed on wheat lines and cultivars carrying Sr36 in a field screening nursery for stem rust at Njoro, Kenya. We derived 18 single-pustule isolates from stem rust samples collected from the 2007 Njoro nursery. The isolates were evaluated for virulence on 20 North American stem rust differential lines and on wheat lines and cultivars carrying Sr36, Sr31+Sr36, and Sr24+Sr31. Of the 18 isolates, 10 produced infection types 3+ to 4 on line W2691SrTt-1 (monogenic for Sr36) and other lines that carry Sr36 and belonged to a new virulence phenotype that was not detected in previous years. These isolates were identified as race TTTSK. The remaining eight isolates were identified as races TTKSK (five isolates) and TTKST (three isolates), with avirulence and virulence, respectively, to Sr24. Thirteen simple sequence repeat (SSR) markers were used to examine the genetic relationships among the three races in the TTKS lineage. All isolates in the lineage shared an identical SSR genotype and were clearly different from North American races. In all, 16 wheat cultivars and 60 elite breeding lines, postulated to possess Sr36, were susceptible to race TTTSK. The occurrence of race TTTSK with combined virulence on Sr31 and Sr36 has further broadened the virulence spectrum of the TTKS lineage and rendered an important source of resistance ineffective.

Trichothecenes in cereal grains.

Abstract: Trichothecenes are sesquiterpenoid mycotoxins associated with fusarium head blight (FHB) of cereals, with worldwide economic and health impacts. While various management strategies have been proposed to reduce the mycotoxin risk, breeding towards FHB-resistance appears to be the most effective means to manage the disease, and reduce trichothecene contamination of cereal-based food products. This review provides a brief summary of the trichothecene synthesis in Fusarium species, their toxicity in plants and humans, followed by the current methods of screening and breeding for resistance to FHB and trichothecene accumulation.

Transitional properties of starch colloid with particle size reduction from micro- to nanometer.

Abstract: High-pressure homogenization was used to disperse starch particles in water and reduce the size from micro- to nanometer. The resultant starch colloids were characterized by particle morphology, mean size, size distribution, and zeta potential. Starch slurries were transformed from a mixture containing sediment, dispersion, and sol, to gel as a result of reduction of the particle size from 3-6mum to 10-20nm under a pressure of 207MPa. Furthermore, this process led to the transition of fluid properties without affecting the crystal structure and thermal stability of starch granules. Viscosity of the colloids increased with an increased number of homogenization passes, accompanied by a decreased particle size, narrower particle size distribution (PSD), and an increased absolute zeta potential, indicating the formation of a suspension or stable gel composed of nanoparticles. Lognormal and two other mathematical functions were established to describe the PSDs and their relationship to the homogenization passes. Hence, an environmentally friendly means of producing starch-based nanoparticles or nanogels with high yields, and predictable size and viscosity properties was presented.

Secoviridae: a proposed family of plant viruses within the order Picornavirales that combines the families Sequiviridae and Comoviridae, the unassigned genera Cheravirus and Sadwavirus, and the proposed genus Torradovirus.

Abstract: The order Picornavirales includes several plant viruses that are currently classified into the families Comoviridae (genera Comovirus, Fabavirus and Nepovirus) and Sequiviridae (genera Sequivirus and Waikavirus) and into the unassigned genera Cheravirus and Sadwavirus. These viruses share properties in common with other picornavirales (particle structure, positive-strand RNA genome with a polyprotein expression strategy, a common replication block including type III helicase, a 3C-like cysteine proteinase and type I RNA-dependent RNA polymerase). However, they also share unique properties that distinguish them from other picornavirales. They infect plants and use specialized proteins or protein domains to move through their host. In phylogenetic analysis based on their replication proteins, these viruses form a separate distinct lineage within the picornavirales branch. To recognize these common properties at the taxonomic level, we propose to create a new family termed “Secoviridae” to include the genera Comovirus, Fabavirus, Nepovirus, Cheravirus, Sadwavirus, Sequivirus and Waikavirus. Two newly discovered plant viruses share common properties with members of the proposed family Secoviridae but have distinct specific genomic organizations. In phylogenetic reconstructions, they form a separate sub-branch within the Secoviridae lineage. We propose to create a new genus termed Torradovirus (type species, Tomato torrado virus) and to assign this genus to the proposed family Secoviridae.

Impacts of climate change on indirect human exposure to pathogens and chemicals from agriculture.

Abstract: ObjectiveClimate change is likely to affect the nature of pathogens and chemicals in the environment and their fate and transport. Future risks of pathogens and chemicals could therefore be very di...