Showing papers by "Banaras Hindu University published in 2016"

Cu-Catalyzed Click Reaction in Carbohydrate Chemistry

Abstract: Cu(I)-catalyzed azide–alkyne 1,3-dipolar cycloaddition (CuAAC), popularly known as the “click reaction”, serves as the most potent and highly dependable tool for facile construction of simple to complex architectures at the molecular level. Click-knitted threads of two exclusively different molecular entities have created some really interesting structures for more than 15 years with a broad spectrum of applicability, including in the fascinating fields of synthetic chemistry, medicinal science, biochemistry, pharmacology, material science, and catalysis. The unique properties of the carbohydrate moiety and the advantages of highly chemo- and regioselective click chemistry, such as mild reaction conditions, efficient performance with a wide range of solvents, and compatibility with different functionalities, together produce miraculous neoglycoconjugates and neoglycopolymers with various synthetic, biological, and pharmaceutical applications. In this review we highlight the successful advancement of Cu(I)...

First measurement of electron neutrino appearance in NOvA

Abstract: We report results from the first search for ν_{μ}→ν_{e} transitions by the NOvA experiment. In an exposure equivalent to 2.74×10^{20} protons on target in the upgraded NuMI beam at Fermilab, we observe 6 events in the Far Detector, compared to a background expectation of 0.99±0.11(syst) events based on the Near Detector measurement. A secondary analysis observes 11 events with a background of 1.07±0.14(syst). The 3.3σ excess of events observed in the primary analysis disfavors 0.1π<δ_{CP}<0.5π in the inverted mass hierarchy at the 90% C.L.

Energy crops in sustainable phytoremediation

Abstract: Phytoremediation is a holistic approach and can be used in large scale to remediate the contaminated land resources. Although the concept of phytoremediation is few decades old and has been applied on a wide range of pollutants, but their sustainability is still questioned at various scientific forums. Therefore, it is the need of the hour to remediate our valuable resources with due considerations for future generations. Such a synergistic bonding by using potential energy crops in phytoremediation programs would be useful to generate new bioenergy resources along with the remediation of contaminated soil. There are several energy crops in the world, but four promising and dedicated energy crops i.e. Miscanthus, Ricinus, Jatropha, Populus have primarily considered in this review to accomplish energy demands with their phytoremediation potential. These four energy crops also act as potential carbon sink and offer an additional profit as carbon tax credits. In recent time we have been able to improve our understanding in phytoremediation, but use of energy plants were not considered so far to make this venture socio-economically acceptable to the society. The present review provides a strategy for linking energy crops in phytoremediation to resolve the sustainability issues and effectively solve the challenges of ever increasing contaminated sites and biofuel demands now and for future.

Friends or foes? Emerging insights from fungal interactions with plants

Abstract: Fungi interact with plants in various ways, with each interaction giving rise to different alterations in both partners. While fungal pathogens have detrimental effects on plant physiology, mutualistic fungi augment host defence responses to pathogens and/or improve plant nutrient uptake. Tropic growth towards plant roots or stomata, mediated by chemical and topographical signals, has been described for several fungi, with evidence of species-specific signals and sensing mechanisms. Fungal partners secrete bioactive molecules such as small peptide effectors, enzymes and secondary metabolites which facilitate colonization and contribute to both symbiotic and pathogenic relationships. There has been tremendous advancement in fungal molecular biology, omics sciences and microscopy in recent years, opening up new possibilities for the identification of key molecular mechanisms in plant–fungal interactions, the power of which is often borne out in their combination. Our fragmentary knowledge on the interactions between plants and fungi must be made whole to understand the potential of fungi in preventing plant diseases, improving plant productivity and understanding ecosystem stability. Here, we review innovative methods and the associated new insights into plant–fungal interactions.

Impact of stress on oocyte quality and reproductive outcome.

Abstract: Stress is an important factor that affects physical and mental status of a healthy person disturbing homeostasis of the body. Changes in the lifestyle are one of the major causes that lead to psychological stress. Psychological stress could impact the biology of female reproduction by targeting at the level of ovary, follicle and oocyte. The increased level of stress hormone such as cortisol reduces estradiol production possibly by affecting the granulosa cell functions within the follicle, which results deterioration in oocyte quality. Adaptation of lifestyle behaviours may generate reactive oxygen species (ROS) in the ovary, which further affects female reproduction. Balance between level of ROS and antioxidants within the ovary are important for maintenance of female reproductive health. Physiological level of ROS modulates oocyte functions, while its accumulation leads to oxidative stress (OS). OS triggers apoptosis in majority of germ cells within the ovary and even in ovulated oocytes. Although both mitochondria- as well as death-receptor pathways are involved in oocyte apoptosis, OS-induced mitochondria-mediated pathway plays a major role in the elimination of majority of germ cells from ovary. OS in the follicular fluid deteriorates oocyte quality and reduces reproductive outcome. On the other hand, antioxidants reduce ROS levels and protect against OS-mediated germ cell apoptosis and thereby depletion of germ cells from the ovary. Indeed, OS is one of the major factors that has a direct negative impact on oocyte quality and limits female reproductive outcome in several mammalian species including human.

Silicon Nanoparticles More Efficiently Alleviate Arsenate Toxicity than Silicon in Maize Cultiver and Hybrid Differing in Arsenate Tolerance

Abstract: Though role of silicon (Si) in alleviation of various abiotic stresses is well known; however, role of silicon nanoparticles (SiNp) in mitigation of abiotic stresses is still not known. Therefore, hydroponic experiments were conducted to investigate if SiNPs are more effective than Si in mitigation of arsenate (AsV; 25 and 50 µM) toxicity in maize cultivar and hybrid differing in AsV tolerance. Under AsV stress, reduction in growth was accompanied by enhanced level of As and oxidative stress. AsV inhibited activities of antioxidant enzymes like ascorbate peroxidase, glutathione reductase and dehydroascorbate reductase (except superoxide dismutase). The redox status of ascorbate and glutathione was disturbed by AsV as indicated by a steep decline in their reduced/oxidized ratios. However, addition of Si and SiNp ameliorates AsV toxicity in maize. Si and SiNp both could reduce AsV toxicity in maize cultivar and hybrid, which could be related with decreased accumulation of As and oxidative stress, and enhanced components of the ascorbate-glutathione cycle (AsA-GSH cycle). But lowering in the accumulation of As and oxidative stress markers, and enhancement in components of the AsA-GSH cycle was prominent in SiNp fed seedlings under AsV stress. The results also showed that SiNp are more effective in reducing AsV toxicity than Si, which is due to their greater availability to seedlings. Comparing responses of cultivar and hybrid, maize cultivar shows more resistance against AsV than hybrid.

Flavivirus NS1: a multifaceted enigmatic viral protein

Abstract: Flaviviruses are emerging arthropod-borne viruses representing an immense global health problem. The prominent viruses of this group include dengue virus, yellow fever virus, Japanese encephalitis virus, West Nile virus tick borne encephalitis virus and Zika Virus. These are endemic in many parts of the world. They are responsible for the illness ranging from mild flu like symptoms to severe hemorrhagic, neurologic and cognitive manifestations leading to death. NS1 is a highly conserved non-structural protein among flaviviruses, which exist in diverse forms. The intracellular dimer form of NS1 plays role in genome replication, whereas, the secreted hexamer plays role in immune evasion. The secreted NS1 has been identified as a potential diagnostic marker for early detection of the infections caused by flaviviruses. In addition to the diagnostic marker, the importance of NS1 has been reported in the development of therapeutics. NS1 based subunit vaccines are at various stages of development. The structural details and diverse functions of NS1 have been discussed in detail in this review.

Influence of High and Low Levels of Plant-Beneficial Heavy Metal Ions on Plant Growth and Development

Abstract: Heavy metals (HMs) exists in the environment in both forms as essential and non-essential. These HM ions enter in soil biota from various sources like natural and anthropogenic. Essential HMs such as cobalt (Co), copper (Cu), iron (Fe), manganese (Mn), molybdenum (Mo), nickel (Ni), and zinc (Zn) plays a beneficial role in plant growth and development. At optimum level these beneficial elements improves the plant’s nutritional level and also several mechanisms essential for the normal growth and better yield of plants. The range of their optimality for land plants is varied. Plant uptake heavy metals as a soluble component or solubilized them by root exudates. While their presence in excess become toxic for plants that switches the plant’s ability to uptake and accumulate other nonessential elements. The increased amount of HMs within the plant tissue displays direct and indirect toxic impacts. Such direct effects are the generation of oxidative stress which further aggravates inhibition of cytoplasmic enzymes and damage to cell structures. Although, indirect possession is the substitution of essential nutrients at plant’s cation exchange sites. These ions readily influence role of various enzymes and proteins, arrest metabolism, and reveal phytotoxicity. On account of recent advancements on beneficial HMs ions Co, Cu, Fe, Mn, Mo, Ni, and Zn in soil-plant system, the present paper: overview the sources of HMs in soils and their uptake and transportation mechanism, here we have discussed the role of metal transporters in transporting the essential metal ions from soil to plants. The role played by Co, Cu, Fe, Mn, Mo, Ni, and Zn at both low and high level on the plant growth and development and the mechanism to alleviate metal toxicity at high level have been also discussed. At the end, on concluding the article we have also discussed the future perspective in respect to beneficial HM ions interaction with plant at both levels.

A remote sensing aided multi-layer perceptron-Markov chain analysis for land use and land cover change prediction in Patna district (Bihar), India

Abstract: Land use and land cover (LULC) changes are recognized as one of the most significant driver of environmental changes, mainly due to rapid urbanization. In this paper, an attempt has been made to appraise the ability of multi-layer perceptron-Markov chain analysis (MLP-MCA) integrated method to monitor and predict the future LULC change scenarios in Patna district, Bihar using remote sensing images. A supervised maximum likelihood classification method was applied to derive LULC maps from 1988, 2001, and 2013 Landsat Thematic Mapper (TM)/Enhanced Thematic Mapper Plus (ETM+)/Operational Land Imager (OLI) images, respectively. The LULC maps of 1988 and 2001 were employed to predict the LULC scenario for 2013 using MLP-MCA method. The predicted result was compared with the observed LULC map of 2013 to validate the method using kappa index statistics. Finally, based on the results, the future LULC change prediction for 2038 and 2050 was performed. The outcomes of this study reveal the rapid growth in ​built up area results in continuous decrease in agricultural lands.

Use of sugarcane industrial by-products for improving sugarcane productivity and soil health

Abstract: Sugarcane industries are age-old industrial practices in India which contribute a significant amount of by-products as waste. Handling and management of these by-products are huge task, because those require lot of space for storage. However, it provides opportunity to utilize these by-products in agricultural crop production as organic nutrient source. Therefore, it is attempted to review the potential of sugar industries by-products, their availability, and use in agricultural production. A large number of research experiments and literatures have been surveyed and critically analyzed for the effect of sugarcane by-products on crop productivity and soil properties. Application of sugar industries by-products, such as press mud and bagasse, to soil improves the soil chemical, physical, and biological properties and enhanced the crop quality and yield. A huge possibility of sugarcane industries by-products can be used in agriculture to cut down the chemical fertilizer requirement. If all the press mud is recycled through agriculture about 32,464, 28,077, 14,038, 3434, 393, 1030, and 240 tonnes (t) of N, P, K, Fe, Zn, Mn, and Cu, respectively, can be available and that helps in saving of costly chemical fertilizers. Application of sugarcane industries by-products reduces the recommended dose of fertilizers and improves organic matter of soil during the crop production. It can also be used in combination with inorganic chemical fertilizers and can be packed and marketed along with commercial fertilizer for a particular cropping system. That helps in reduce the storage problem of sugarcane industries by-products across the India.

High Per formance and Flexible Supercapacitors based on Carbonized Bamboo Fibers for Wide Temperature Applications

Abstract: High performance carbonized bamboo fibers were synthesized for a wide range of temperature dependent energy storage applications. The structural and electrochemical properties of the carbonized bamboo fibers were studied for flexible supercapacitor applications. The galvanostatic charge-discharge studies on carbonized fibers exhibited specific capacity of ~510F/g at 0.4 A/g with energy density of 54 Wh/kg. Interestingly, the carbonized bamboo fibers displayed excellent charge storage stability without any appreciable degradation in charge storage capacity over 5,000 charge-discharge cycles. The symmetrical supercapacitor device fabricated using these carbonized bamboo fibers exhibited an areal capacitance of ~1.55 F/cm2 at room temperature. In addition to high charge storage capacity and cyclic stability, the device showed excellent flexibility without any degradation to charge storage capacity on bending the electrode. The performance of the supercapacitor device exhibited ~65% improvement at 70 °C compare to that at 10 °C. Our studies suggest that carbonized bamboo fibers are promising candidates for stable, high performance and flexible supercapacitor devices.

Nanoparticles Based on Chitosan as Carriers for the Combined Herbicides Imazapic and Imazapyr.

Abstract: The use of lower concentrations and fewer applications of herbicides is one of the prime objectives of the sustainable agriculture as it decreases the toxicity to non-targeted organisms and the risk of wider environmental contamination. In the present work, nanoparticles were developed for encapsulation of the herbicides imazapic and imazapyr. Alginate/chitosan and chitosan/tripolyphosphate nanoparticles were manufactured, and their physicochemical stability was evaluated. Determinations were made of the encapsulation efficiency and release kinetics, and the toxicity of the nanoparticles was evaluated using cytotoxicity and genotoxicity assays. The effects of herbicides and herbicide-loaded nanoparticles on soil microorganisms were studied in detail using real-time polymerase chain reactions. The nanoparticles showed an average size of 400 nm and remained stable during 30 days of storage at ambient temperature. Satisfactory encapsulation efficiencies of between 50 and 70% were achieved for both types of particles. Cytotoxicity assays showed that the encapsulated herbicides were less toxic, compared to the free compounds, and genotoxicity was decreased. Analyses of soil microbiota revealed changes in the bacteria of the soils exposed to the different treatments. Our study proves that encapsulation of the herbicides improved their mode of action and reduced their toxicity, indicating their suitability for use in future practical applications.

Microbial fuel cell: a green approach for the utilization of waste for the generation of bioelectricity

Abstract: Today we are witnessing a global energy crisis due to huge energy demands and limited resources. Non-renewable energy sources are depleting and renewable energy sources are not properly utilized. There is an immediate need for search of alternate routes for energy generation. Microbial fuel cell (MFC) technology, which uses microorganisms to transform chemical energy of organic compounds into electricity is considered a promising alternative. Extensive studies have corroborated new insights into MFC, which show that a wide array of carbon sources including wastes can be employed using a variety of microbes. Consequently, microbial transformation of wastes using novel bioremediation strategies such as MFC for energy generation is considered as an efficient and environmentally benign approach. This paper deals with critical review of different classes of xenobiotics and wastes that can be employed for bioenergy generation, microorganisms involved, power output, major benefits, challenges and pit holes of MFC technology.

First measurement of muon-neutrino disappearance in NOvA

Abstract: This paper reports the first measurement using the NOvA detectors of νμ disappearance in a νμ beam. The analysis uses a 14 kton-equivalent exposure of 2.74×1020 protons-on-target from the Fermilab NuMI beam. Assuming the normal neutrino mass hierarchy, we measure Δm232=(2.52+0.20−0.18)×10−3 eV2 and sin2θ23 in the range 0.38–0.65, both at the 68% confidence level, with two statistically degenerate best-fit points at sin2θ23=0.43 and 0.60. Results for the inverted mass hierarchy are also presented.

Exploring marginal and degraded lands for biomass and bioenergy production: An Indian scenario

Abstract: Globally, the share of renewable energy is limited to 19% of the total energy consumption. Out of which, 9.3% is shared by traditional biomass. In India, the installed capacity of energy production from biomass is estimated as 12.8% of the total renewables. Although this scenario is at par with the global level, even this share of bioenergy production is not sufficient to meet the present and future energy demands of India. Therefore, there is an immediate need to maximize the bioenergy production in India. Apart from the reduced emission rate than the fossil fuels, bioenergy has also immense potential to mitigate various environmental issues and therefore the biofuel cultivation has been considered as an additional opportunity for land restoration. However, the land availability for bioenergy production is very limited since there is a growing demand to produce more food to feed the rapidly growing population. Therefore, the arable lands cannot be considered for bioenrgy production. Hence we propose that the sustainable intensification of bioenergy production from degraded land is a viable option because the wise and judicious utilization of marginal and degraded lands can play a vital role in solving the conflict between food and fuel production and offer a sustainable solution to meet out the energy requirement of the society. In this backdrop, the present article is aimed to explore the prospects and promises of bioenergy production from the marginal and degraded lands of India. Since India has around 39.24 million hectares of wastelands, sustainable utilization of such land would provide multipurpose benefits such as biomass and bioenergy production, soil carbon sequestration and regaining ecosystem services.

Overview of Alzheimer's Disease and Some Therapeutic Approaches Targeting Aβ by Using Several Synthetic and Herbal Compounds.

Abstract: Alzheimer's disease (AD) is a complex age-related neurodegenerative disease. In this review, we carefully detail amyloid-β metabolism and its role in AD. We also consider the various genetic animal models used to evaluate therapeutics. Finally, we consider the role of synthetic and plant-based compounds in therapeutics.

MFPPI - Multi FASTA ProtParam Interface

Abstract: Physico-chemical properties reflect the functional and structural characteristics of a protein. The comparative study of the physicochemical properties is important to know role of a protein in exploring its molecular evolution. A number of online and offline tools are available for calculating the physico-chemical properties of a single protein sequence. However, a tool is not available for a comparative study with graphical visualization of Multi-FASTA sequences. Hence, we describe the development and utility of MFPPI V.1.0 (a web interface developed in JAVA platform) to input each FASTA sequence from Multi-FASTA file into the ProtParam web server for the calculation of physico-chemical properties. MFPPI V.1.0 calculates different physico-chemical properties for a given set of proteins in a single run and saves the data in the MSExcel sheet. Furthermore, it provides a graphical representation of protein physico-chemical properties for analysis and visualization of data in a user-friendly manner. Therefore, the output from the analysis helps to understand compositional changes and functional relationship in evolution among organisms. We have demonstrated the utility of MFPPI V.1.0 using 17 mtATP6 protein sequences from different mammalian species. It is available for free at http://insilicogenomics.in/mfpcalc/mfppi.html.