Central Tuber Crops Research Institute

About: Central Tuber Crops Research Institute is a facility organization based out in Thiruvananthapuram, Kerala, India. It is known for research contribution in the topics: Starch & Fermentation. The organization has 475 authors who have published 587 publications receiving 10285 citations.

Complete Genome Sequence of Potato leafroll virus Isolates Infecting Potato in the Different Geographical Areas of India Shows Low Level Genetic Diversity.

Abstract: Five Potato leafroll virus (PLRV) isolates were collected from five states representing different potato growing parts of India. The ssRNA genome sequences of these isolates were determined. The genome comprised of 5,883 nucleotides and deduced genome organization resembled other PLRV isolates. About 97.6–98.7 % similarities was observed within the Indian isolates and were more close to European, Canadian, African, American and Czech isolates (95.8–98.6 %) than to an Australian isolate (92.9–93.4 %). These isolates were 43.7–53.1 % similar to other poleroviruses and 29.1–29.3 % to Barley yellow dwarf virus, a luteovirus. Out of five isolates, the isolate PBI-6 was recombinant one as detected by RDP3 software. Multiple sequence alignment of nucleotide and amino acid sequences of different ORFs indicated that the ORF 3 and ORF 4, corresponding to coat protein and movement proteins are more conserved than other ORFs. Amino acid changes specific to Indian isolates were observed and it was more in ORF 2 than in ORF 0, ORF 3 and ORF 4. This is the first report of complete genome sequence of PLRV isolates from India, which reveals low level genetic diversity.

Effect of biocontrol agents and biofertilizers on root rot, yield, harvest index and nutrient uptake of cassava (Manihot esculanta Crantz)

Abstract: Cassava is an important subsidiary food and industrial raw material in the tropics. Root rot disease, caused by Phytophthora palmivora, poses a serious threat to cassava cultivation in Tamil Nadu, India. Field experiments (2008–09) were conducted to study the effect of biocontrol agents (Trichoderma spp. and Pseudomonas fluorescens) and biofertilizers (Azospirillum, vesicular–arbuscular mycorrhizal fungi and phosphorus-solubilizing bacteria) on root rot, yield, harvest index and nutrient uptake of cassava at two NPK rates. The design of the experiment was a split plot with two NPK rates, recommended and 50% recommended rate, as the main plot treatments and five biocontrol agents and biofertilizers as subplot treatments. The results clearly indicated that use of a bioinoculants consortium significantly reduced root rot infection/disease incidence over uninoculated controls. Azospirillum significantly improved the yield of cassava at 50% of the recommended rate of NPK. NPK rates had no significant impact on...

Morphological, pathological and molecular characterization of Phytophthora colocasiae responsible for taro leaf blight disease in India

Abstract: The oomycetous fungus Phytophthora colocasiae that causes taro leaf blight is one of the most devastating diseases of taro and is widely distributed in India A combination of morphological (colony morphology, mating type, pathogenicity, metalaxyl sensitivity) and molecular techniques (rDNA ITS sequencing and Start codon targeted polymorphism, ScoT analysis) was used to characterize 50 isolates of P colocasiae obtained from different locations in India Considerable differences in morphological parameters were observed ScoT analysis revealed high polymorphism among the isolates This study confirms that isolates of P colocasiae are highly dynamic in nature and a considerable degree of diversity exists among them A detailed knowledge of the morphological and molecular characters of P colocasiae will help in developing suitable control strategies against the taro leaf blight disease

Rapid detection of tomato leaf curl Bengaluru virus through loop mediated isothermal amplification assay

Abstract: A loop-mediated isothermal amplification (LAMP) technique was employed to develop a simple and rapid method for the detection of tomato leaf curl Bangalore virus (ToLCBaV) in diseased plants of tomato (Solanum lycopersicum). Six sets of primers were designed for LAMP technique targeting the conserved AC1 region and successfully detected ToLCBaV. No reaction was detected in the tissues of healthy plants by either the LAMP or the polymerase chain reaction (PCR). The LAMP products can be visualized by presence or absence of turbidity and staining (0.2 μL for 25 μL LAMP product) directly in the tube with nucleic acid stain dye which allowed easy detection. Sensitivity of LAMP assay is 100 times of conventional PCR technique. Although, both the LAMP and the PCR methods were capable of detecting ToLCBaV in infected tissues of tomato, the LAMP method would be more useful than the PCR method for detection of ToLCBaV infection in tomato plants because it is more rapid, simple and accurate method.