Showing papers by "Chinese Academy of Sciences published in 2005"
European Centre for Medium-Range Weather Forecasts1, Lawrence Livermore National Laboratory2, Chinese Academy of Sciences3, Japan Meteorological Agency4, Met Office5, University of Reading6, Max Planck Society7, Royal Netherlands Meteorological Institute8, National Center for Atmospheric Research9, National Oceanic and Atmospheric Administration10
TL;DR: ERA-40 is a re-analysis of meteorological observations from September 1957 to August 2002 produced by the European Centre for Medium-Range Weather Forecasts (ECMWF) in collaboration with many institutions as mentioned in this paper.
Abstract: ERA-40 is a re-analysis of meteorological observations from September 1957 to August 2002 produced by the European Centre for Medium-Range Weather Forecasts (ECMWF) in collaboration with many institutions. The observing system changed considerably over this re-analysis period, with assimilable data provided by a succession of satellite-borne instruments from the 1970s onwards, supplemented by increasing numbers of observations from aircraft, ocean-buoys and other surface platforms, but with a declining number of radiosonde ascents since the late 1980s. The observations used in ERA-40 were accumulated from many sources. The first part of this paper describes the data acquisition and the principal changes in data type and coverage over the period. It also describes the data assimilation system used for ERA-40. This benefited from many of the changes introduced into operational forecasting since the mid-1990s, when the systems used for the 15-year ECMWF re-analysis (ERA-15) and the National Centers for Environmental Prediction/National Center for Atmospheric Research (NCEP/NCAR) re-analysis were implemented. Several of the improvements are discussed. General aspects of the production of the analyses are also summarized.
A number of results indicative of the overall performance of the data assimilation system, and implicitly of the observing system, are presented and discussed. The comparison of background (short-range) forecasts and analyses with observations, the consistency of the global mass budget, the magnitude of differences between analysis and background fields and the accuracy of medium-range forecasts run from the ERA-40 analyses are illustrated. Several results demonstrate the marked improvement that was made to the observing system for the southern hemisphere in the 1970s, particularly towards the end of the decade. In contrast, the synoptic quality of the analysis for the northern hemisphere is sufficient to provide forecasts that remain skilful well into the medium range for all years. Two particular problems are also examined: excessive precipitation over tropical oceans and a too strong Brewer-Dobson circulation, both of which are pronounced in later years. Several other aspects of the quality of the re-analyses revealed by monitoring and validation studies are summarized. Expectations that the ‘second-generation’ ERA-40 re-analysis would provide products that are better than those from the firstgeneration ERA-15 and NCEP/NCAR re-analyses are found to have been met in most cases. © Royal Meteorological Society, 2005. The contributions of N. A. Rayner and R. W. Saunders are Crown copyright.
7,110 citations
27 Oct 2005
TL;DR: A public database of common variation in the human genome: more than one million single nucleotide polymorphisms for which accurate and complete genotypes have been obtained in 269 DNA samples from four populations, including ten 500-kilobase regions in which essentially all information about common DNA variation has been extracted.
Abstract: Inherited genetic variation has a critical but as yet largely uncharacterized role in human disease. Here we report a public database of common variation in the human genome: more than one million single nucleotide polymorphisms (SNPs) for which accurate and complete genotypes have been obtained in 269 DNA samples from four populations, including ten 500-kilobase regions in which essentially all information about common DNA variation has been extracted. These data document the generality of recombination hotspots, a block-like structure of linkage disequilibrium and low haplotype diversity, leading to substantial correlations of SNPs with many of their neighbours. We show how the HapMap resource can guide the design and analysis of genetic association studies, shed light on structural variation and recombination, and identify loci that may have been subject to natural selection during human evolution.
5,479 citations
TL;DR: In this paper, the most important experimental results from the first three years of nucleus-nucleus collision studies at RHIC were reviewed, with emphasis on results of the STAR experiment.
2,750 citations
TL;DR: It is reported that species of bats are a natural host of coronaviruses closely related to those responsible for the SARS outbreak, and these viruses display greater genetic variation than SARS-CoV isolated from humans or from civets.
Abstract: Severe acute respiratory syndrome (SARS) emerged in 2002 to 2003 in southern China. The origin of its etiological agent, the SARS coronavirus (SARS-CoV), remains elusive. Here we report that species of bats are a natural host of coronaviruses closely related to those responsible for the SARS outbreak. These viruses, termed SARS-like coronaviruses (SL-CoVs), display greater genetic variation than SARS-CoV isolated from humans or from civets. The human and civet isolates of SARS-CoV nestle phylogenetically within the spectrum of SL-CoVs, indicating that the virus responsible for the SARS outbreak was a member of this coronavirus group.
2,263 citations
TL;DR: A 5-year-resolution absolute-dated oxygen isotope record from Dongge Cave, southern China, provides a continuous history of the Asian monsoon over the past 9000 years, and shows that some, but not all, of the monsoon variability at these frequencies results from changes in solar output.
Abstract: A 5-year-resolution absolute-dated oxygen isotope record from Dongge Cave, southern China, provides a continuous history of the Asian monsoon over the past 9000 years. Although the record broadly follows summer insolation, it is punctuated by eight weak monsoon events lasting approximately 1 to 5 centuries. One correlates with the "8200-year" event, another with the collapse of the Chinese Neolithic culture, and most with North Atlantic ice-rafting events. Cross-correlation of the decadal- to centennial-scale monsoon record with the atmospheric carbon-14 record shows that some, but not all, of the monsoon variability at these frequencies results from changes in solar output.
2,139 citations
TL;DR: Recent progress in wettability on functional surfaces is reviewed through the cooperation between the chemical composition and the surface micro- and nanostructures, which may bring great advantages in a wide variety of applications in daily life, industry, and agriculture.
Abstract: Biomimetic research indicates that many phenomena regarding wettability in nature, such as the self-cleaning effect on a lotus leaf and cicada wing, the anisotropic dewetting behavior on a rice leaf, and striking superhydrophobic force provided by a water strider's leg, are all related to the unique micro- and nanostructures on the surfaces. It gives us much inspiration to realize special wettability on functional surfaces through the cooperation between the chemical composition and the surface micro- and nanostructures, which may bring great advantages in a wide variety of applications in daily life, industry, and agriculture. This Account reviews recent progress in these aspects.
1,931 citations
TL;DR: In this paper, the authors present a continuous record of the Asian monsoon over the last 16 ka from δ18O measurements of stalagmite calcite, which is combined with a chronology from 45 precise 230Th dates.
1,527 citations
TL;DR: In this paper, a new scenario of dark energy dubbed quintom was proposed, which gives rise to the equation of state larger than -1 in the past and less than −1 today, satisfying current observations.
1,337 citations
TL;DR: In this paper, a new and highly efficient direct solvent, 1-allyl-3methylimidazolium chloride (AMIMCl), has been used for the dissolution and regeneration of cellulose.
Abstract: A new and highly efficient direct solvent, 1-allyl-3-methylimidazolium chloride (AMIMCl), has been used for the dissolution and regeneration of cellulose. The cellulose samples without any pretreatment were readily dissolved in AMIMCl. The regenerated cellulose materials prepared by coagulation in water exhibited a good mechanical property. Because of its thermostable and nonvolatile nature, AMIMCl was easily recycled. Therefore, a novel and nonpolluting process for the manufacture of regenerated cellulose materials using AMIMCl has been developed in this work.
1,307 citations
TL;DR: Physiological analysis suggested that SKC1 is involved in regulating K+/Na+ homeostasis under salt stress, providing a potential tool for improving salt tolerance in crops.
Abstract: Many important agronomic traits in crop plants, including stress tolerance, are complex traits controlled by quantitative trait loci (QTLs). Isolation of these QTLs holds great promise to improve world agriculture but is a challenging task. We previously mapped a rice QTL, SKC1, that maintained K(+) homeostasis in the salt-tolerant variety under salt stress, consistent with the earlier finding that K(+) homeostasis is important in salt tolerance. To understand the molecular basis of this QTL, we isolated the SKC1 gene by map-based cloning and found that it encoded a member of HKT-type transporters. SKC1 is preferentially expressed in the parenchyma cells surrounding the xylem vessels. Voltage-clamp analysis showed that SKC1 protein functions as a Na(+)-selective transporter. Physiological analysis suggested that SKC1 is involved in regulating K(+)/Na(+) homeostasis under salt stress, providing a potential tool for improving salt tolerance in crops.
1,242 citations
TL;DR: In this article, Zhang et al. used zircon U-Pb SHRIMP (5 samples), laser ablation (LA) ICP-MS (22 samples), and TIMS (5 sample) dating to establish that the Early Cretaceous was a significant period of igneous activity in the Liaodong Peninsula, with a duration of about 10 Ma.
TL;DR: U-Pb zircon dates from volcanic ash beds within the Doushantuo Formation (China) indicate that its deposition occurred between 635 and 551 million years ago, indicating synchronous deglaciation.
Abstract: U-Pb zircon dates from volcanic ash beds within the Doushantuo Formation (China) indicate that its deposition occurred between 635 and 551 million years ago. The base records termination of the global-scale Marinoan glaciation and is coeval with similar dated rocks from Namibia, indicating synchronous deglaciation. Carbon isotopic and sequence-stratigraphic data imply that the spectacular animal fossils of the Doushantuo Formation are for the most part younger than 580 million years old. The uppermost Doushantuo Formation contains a pronounced negative carbonate carbon isotopic excursion, which we interpret as a global event at circa 551 million years ago.
17 Oct 2005
TL;DR: A novel non-statistics based face representation approach, local Gabor binary pattern histogram sequence (LGBPHS), in which training procedure is unnecessary to construct the face model, so that the generalizability problem is naturally avoided.
Abstract: For years, researchers in face recognition area have been representing and recognizing faces based on subspace discriminant analysis or statistical learning. Nevertheless, these approaches are always suffering from the generalizability problem. This paper proposes a novel non-statistics based face representation approach, local Gabor binary pattern histogram sequence (LGBPHS), in which training procedure is unnecessary to construct the face model, so that the generalizability problem is naturally avoided. In this approach, a face image is modeled as a "histogram sequence" by concatenating the histograms of all the local regions of all the local Gabor magnitude binary pattern maps. For recognition, histogram intersection is used to measure the similarity of different LGBPHSs and the nearest neighborhood is exploited for final classification. Additionally, we have further proposed to assign different weights for each histogram piece when measuring two LGBPHSes. Our experimental results on AR and FERET face database show the validity of the proposed approach especially for partially occluded face images, and more impressively, we have achieved the best result on FERET face database.
TL;DR: The intrinsic plasticity or brittleness of crystalline metals correlates with the ratio of the elastic shear modulus to the bulk modulus, and when the ratio exceeds a critical value, the metal is brittle as mentioned in this paper.
Abstract: The intrinsic plasticity or brittleness of crystalline metals correlates with the ratio of the elastic shear modulus μ to the bulk modulus B; when the ratio μ/B exceeds a critical value, the metal is brittle. Sufficient data on elastic moduli and toughness are now available to permit an assessment for metallic glasses. We find a similar correlation, with the critical value of μ/B for metallic glasses (0.41–0.43) more sharply defined than for crystalline metals. This critical value applies also for annealing-induced embrittlement of metallic glasses. The clear correlation between mechanical behaviour (plasticity or brittleness) and μ/B assists in understanding flow and fracture mechanisms, and in guiding alloy design to alleviate brittleness of metallic glasses.
TL;DR: This paper investigates the predictability of financial movement direction with SVM by forecasting the weekly movement direction of NIKKEI 225 index and proposes a combining model by integrating SVM with the other classification methods.
TL;DR: It is shown that miR164 guides the cleavage of endogenous and transgenic NAC1 mRNA, producing 3′-specific fragments, which indicates that auxin induction ofmiR164 provides a homeostatic mechanism to clear Nac1 mRNA to downregulate auxin signals.
Abstract: Although several plant microRNAs (miRNAs) have been shown to play a role in plant development, no phenotype has yet been associated with a reduction or loss of expression of any plant miRNA. Arabidopsis thaliana miR164 was predicted to target five NAM/ATAF/CUC (NAC) domain‐encoding mRNAs, including NAC1, which transduces auxin signals for lateral root emergence. Here, we show that miR164 guides the cleavage of endogenous and transgenic NAC1 mRNA, producing 39specific fragments. Cleavage was blocked by NAC1 mutations that disrupt base pairing with miR164. Compared with wildtype plants, Arabidopsis mir164a and mir164b mutant plants expressed less miR164 and more NAC1 mRNA and produced more lateral roots. These mutant phenotypes can be complemented by expression of the appropriate MIR164a and MIR164b genomic sequences. By contrast, inducible expression of miR164 in wild-type plants led to decreased NAC1 mRNA levels and reduced lateral root emergence. Auxin induction of miR164 was mirrored by an increase in the NAC1 mRNA 39 fragment, which was not observed in the auxin-insensitive mutants auxin resistant1 (axr1-12), axr2-1, and transport inhibitor response1. Moreover, the cleavage-resistant form of NAC1 mRNA was unaffected by auxin treatment. Our results indicate that auxin induction of miR164 provides a homeostatic mechanism to clear NAC1 mRNA to downregulate auxin signals.
TL;DR: In this article, a time-varying complex dynamical network model is introduced, and the synchronization of such a model is determined by the inner-coupling matrix and the eigenvalues and corresponding eigenvectors of the coupling configuration matrix.
Abstract: Today, complex networks have attracted increasing attention from various fields of science and engineering. It has been demonstrated that many complex networks display various synchronization phenomena. In this note, we introduce a time-varying complex dynamical network model. We then further investigate its synchronization phenomenon and prove several network synchronization theorems. Especially, we show that synchronization of such a time-varying dynamical network is completely determined by the inner-coupling matrix, and by the eigenvalues and the corresponding eigenvectors of the coupling configuration matrix of the network.
TL;DR: A more inclusive new approach for analyzing duplication history is introduced here, which reveals an ancient whole-genome duplication, a recent segmental duplication on Chromosomes 11 and 12, and massive ongoing individual gene duplications.
Abstract: We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested against a nonredundant collection of 19,079 full-length cDNAs, 97.7% of the genes are aligned, without fragmentation, to the mapped super-scaffolds of one or the other genome. We introduce a gene identification procedure for plants that does not rely on similarity to known genes to remove erroneous predictions resulting from transposable elements. Using the available EST data to adjust for residual errors in the predictions, the estimated gene count is at least 38,000–40,000. Only 2%–3% of the genes are unique to any one subspecies, comparable to the amount of sequence that might still be missing. Despite this lack of variation in gene content, there is enormous variation in the intergenic regions. At least a quarter of the two sequences could not be aligned, and where they could be aligned, single nucleotide polymorphism (SNP) rates varied from as little as 3.0 SNP/kb in the coding regions to 27.6 SNP/kb in the transposable elements. A more inclusive new approach for analyzing duplication history is introduced here. It reveals an ancient whole-genome duplication, a recent segmental duplication on Chromosomes 11 and 12, and massive ongoing individual gene duplications. We find 18 distinct pairs of duplicated segments that cover 65.7% of the genome; 17 of these pairs date back to a common time before the divergence of the grasses. More important, ongoing individual gene duplications provide a never-ending source of raw material for gene genesis and are major contributors to the differences between members of the grass family.
TL;DR: Wang et al. as mentioned in this paper used Landsat TM/ ETM data at a spatial resolution of 30 in to reconstruct spatial and temporal patterns of cropland across China for the time period of 1990-2000.
TL;DR: The "work-hardening" capability and ductility of this class of metallic glass is attributed to a unique structure correlated with atomic-scale inhomogeneity, leading to an inherent capability of extensive shear band formation, interactions, and multiplication of shear bands.
Abstract: Usually, monolithic bulk metallic glasses undergo inhomogeneous plastic deformation and exhibit poor ductility (< 1%) at room temperature. We present a new class of bulk metallic glass, which exhibits high strength of up to 2265 MPa together with extensive "work hardening" and large ductility of 18%. Significant increase in the flow stress was observed during deformation. The "work-hardening" capability and ductility of this class of metallic glass is attributed to a unique structure correlated with atomic-scale inhomogeneity, leading to an inherent capability of extensive shear band formation, interactions, and multiplication of shear bands.
TL;DR: In this paper, the cosmological evolution of a dark energy model with two scalar fields where one of the scalars has canonical kinetic energy and another scalar has negative kinetic energy term is investigated.
TL;DR: Cases of disease caused by H5N1 and transmission of the virus among migratory geese populations in western China are described and this outbreak may help to spread the virus over and beyond the Himalayas.
Abstract: A worrying development could help to spread this dangerous virus beyond its stronghold in southeast Asia. The highly pathogenic H5N1 influenza virus has become endemic in poultry in southeast Asia since 2003 and constitutes a major pandemic threat to humans1. Here we describe cases of disease caused by H5N1 and transmission of the virus among migratory geese populations in western China. This outbreak may help to spread the virus over and beyond the Himalayas and has important implications for developing control strategies.
TL;DR: In this paper, the authors developed a paddy rice mapping algorithm that uses time series of three vegetation indices (LSWI, EVI, and NDVI) derived from MODIS images to identify that initial period of flooding and transplanting in paddy Rice fields, based on the sensitivity of LSWI to the increased surface moisture during the period flooding and rice transplanting.
TL;DR: Biofertilizer has been identified as an alternative to chemical fertilizer to increase soil fertility and crop production in sustainable farming and microbial inoculum not only increased the nutritional assimilation of plant, but also improved soil properties, such as organic matter content and total N in soil.
TL;DR: It is demonstrated thatmiR160-uncoupled production of ARF16 exerts pleiotropic effects on plant phenotypes, and miR160 plays an essential role in regulating Arabidopsis development and growth.
Abstract: The plant root cap mediates the direction of root tip growth and protects internal cells. Root cap cells are continuously produced from distal stem cells, and the phytohormone auxin provides position information for root distal organization. Here, we identify the Arabidopsis thaliana auxin response factors ARF10 and ARF16, targeted by microRNA160 (miR160), as the controller of root cap cell formation. The Pro35S:MIR160 plants, in which the expression of ARF10 and ARF16 is repressed, and the arf10-2 arf16-2 double mutants display the same root tip defect, with uncontrolled cell division and blocked cell differentiation in the root distal region and show a tumor-like root apex and loss of gravity-sensing. ARF10 and ARF16 play a role in restricting stem cell niche and promoting columella cell differentiation; although functionally redundant, the two ARFs are indispensable for root cap development, and the auxin signal cannot bypass them to initiate columella cell production. In root, auxin and miR160 regulate the expression of ARF10 and ARF16 genes independently, generating a pattern consistent with root cap development. We further demonstrate that miR160-uncoupled production of ARF16 exerts pleiotropic effects on plant phenotypes, and miR160 plays an essential role in regulating Arabidopsis development and growth.
01 Jan 2005
TL;DR: In this paper, the authors developed a paddy rice mapping algorithm that uses time series of three vegetation indices (LSWI, EVI, and NDVI) derived from MODIS images to identify that initial period of flooding and transplanting in paddy Rice fields, based on the sensitivity of LSWI to the increased surface moisture during the period flooding and rice transplanting.
Abstract: Information on the area and spatial distribution of paddy rice fields is needed for trace gas emission estimates, management of water resources, and food security. Paddy rice fields are characterized by an initial period of flooding and transplanting, during which period open canopy (a mixture of surface water and rice crops) exists. The Moderate Resolution Imaging Spectroradiometer (MODIS) sensor onboard the NASA EOS Terra satellite has visible, near infrared and shortwave infrared bands; and therefore, a number of vegetation indices can be calculated, including Normalized Difference Vegetation Index (NDVI), Enhanced Vegetation Index (EVI) and Land Surface Water Index (LSWI) that is sensitive to leaf water and soil moisture. In this study, we developed a paddy rice mapping algorithm that uses time series of three vegetation indices (LSWI, EVI, and NDVI) derived from MODIS images to identify that initial period of flooding and transplanting in paddy rice fields, based on the sensitivity of LSWI to the increased surface moisture during the period of flooding and rice transplanting. We ran the algorithm to map paddy rice fields in 13 provinces of southern China, using the 8-day composite MODIS Surface Reflectance products (500-m spatial resolution) in 2002. The resultant MODIS-derived paddy rice map was evaluated, using the National Land Cover Dataset (1: 100,000 scale) derived from analysis of Landsat ETM+ images in 1999/2000. There were reasonable agreements in area estimates of paddy rice fields between the MODIS-derived map and the Landsat-based dataset at the provincial and county levels. The results of this study indicated that the MODIS-based paddy rice mapping algorithm could potentially be applied at large spatial scales to monitor paddy rice agriculture on a timely and frequent basis. (c) 2005 Elsevier Inc. All rights reserved.
TL;DR: The findings presented here indicate that the location and the age of the park are important factors in determining the extent of heavy metal, particularly Cu and Pb, pollution.
TL;DR: A novel kind of magnetic core/mesoporous silica shell nanospheres with a uniform particle diameter of ca.
Abstract: A novel kind of magnetic core/mesoporous silica shell nanospheres with a uniform particle diameter of ca. 270 nm was synthesized. The inner magnetic core endues the whole nanoparticle with magnetic properties, while the outer mesoporous silica shell shows high enough surface area and pore volume. The synthesized material is expected to be applied to targeted drug delivery and multiphase separation. The storage and release of ibuprofen into and from the pore channels of the mesoporous silica shell, as a typical example, are demonstrated.