Colorado School of Mines

Abstract: mothur aims to be a comprehensive software package that allows users to use a single piece of software to analyze community sequence data. It builds upon previous tools to provide a flexible and powerful software package for analyzing sequencing data. As a case study, we used mothur to trim, screen, and align sequences; calculate distances; assign sequences to operational taxonomic units; and describe the alpha and beta diversity of eight marine samples previously characterized by pyrosequencing of 16S rRNA gene fragments. This analysis of more than 222,000 sequences was completed in less than 2 h with a laptop computer.

Abstract: The Review summarizes much of particle physics and cosmology. Using data from previous editions, plus 3,283 new measurements from 899 Japers, we list, evaluate, and average measured properties of gauge bosons and the recently discovered Higgs boson, leptons, quarks, mesons, and baryons. We summarize searches for hypothetical particles such as heavy neutrinos, supersymmetric and technicolor particles, axions, dark photons, etc. All the particle properties and search limits are listed in Summary Tables. We also give numerous tables, figures, formulae, and reviews of topics such as Supersymmetry, Extra Dimensions, Particle Detectors, Probability, and Statistics. Among the 112 reviews are many that are new or heavily revised including those on: Dark Energy, Higgs Boson Physics, Electroweak Model, Neutrino Cross Section Measurements, Monte Carlo Neutrino Generators, Top Quark, Dark Matter, Dynamical Electroweak Symmetry Breaking, Accelerator Physics of Colliders, High-Energy Collider Parameters, Big Bang Nucleosynthesis, Astrophysical Constants and Cosmological Parameters.

Abstract: PREFACE Overview and Historical Perspective Hydrates as a Laboratory Curiosity Hydrates in the Natural Gas Industry Hydrates as an Energy Resource Environmental Aspects of Hydrates Safety Aspects of Hydrates Relationship of This Chapter to Those That Follow Molecular Structures and Similarities to Ice Crystal Structures of Ice Ih and Natural Gas Hydrates Comparison of Properties of Hydrates and Ice The What and the How of Hydrate Structures Hydrate Formation and Dissociation Processes Hydrate Nucleation Hydrate Growth Hydrate Dissociation Estimation Techniques for Phase Equilibria of Natural Gas Hydrates Hydrate Phase Diagrams for Water + Hydrocarbon Systems Three-Phase (LW-H-V) Equilibrium Calculations Quadruple Points and Equilibrium of Three Condensed Phases (LW-H-LHC) Effect of Thermodynamic Inhibitors on Hydrate Formation Two-Phase Equilibrium: Hydrates with One Other Phase Hydrate Enthalpy and Hydration Number from Phase Equilibrium Summary and Relationship to Chapters Which Follow A Statistical Thermodynamic Approach to Hydrate Phase Equilibria Statistical Thermodynamics of Hydrate Equilibria Application of the Method to Analyze Systems of Methane + Ethane + Propane Computer Simulation: Another Microscopic-Macroscopic Bridge Summary Experimental Methods and Measurements of Hydrate Properties Experimental Apparatuses and Methods for Macroscopic Measurements Measurements of the Hydrate Phase Data for Natural Gas Hydrate Phase Equilibria and Thermal Properties Summary and Relationship to Chapters that Follow References Hydrates in the Earth The Paradigm Is Changing from Assessment of Amount to Production of Gas Sediments with Hydrates Typically Have Low Contents of Biogenic Methane Sediment Lithology and Fluid Flow Are Major Controls on Hydrate Deposition Remote Methods Enable an Estimation of the Extent of a Hydrated Reservoir Drilling Logs and/or Coring Provide Improved Assessments of Hydrated Gas Amounts Hydrate Reservoir Models Indicate Key Variables for Methane Production Future Hydrated Gas Production Trends Are from the Permafrost to the Ocean Hydrates Play a Part in Climate Change and Geohazards Summary Hydrates in Production, Processing, and Transportation How Do Hydrate Plugs Form in Industrial Equipment? How Are Hydrate Plug Formations Prevented? How Is a Hydrate Plug Dissociated? Safety and Hydrate Plug Removal Applications to Gas Transport and Storage Summary of Hydrates in Flow Assurance and Transportation APPENDICES INDEX

Abstract: It is now well understood that (1) it is possible to reconstruct sparse signals exactly from what appear to be highly incomplete sets of linear measurements and (2) that this can be done by constrained l1 minimization. In this paper, we study a novel method for sparse signal recovery that in many situations outperforms l1 minimization in the sense that substantially fewer measurements are needed for exact recovery. The algorithm consists of solving a sequence of weighted l1-minimization problems where the weights used for the next iteration are computed from the value of the current solution. We present a series of experiments demonstrating the remarkable performance and broad applicability of this algorithm in the areas of sparse signal recovery, statistical estimation, error correction and image processing. Interestingly, superior gains are also achieved when our method is applied to recover signals with assumed near-sparsity in overcomplete representations—not by reweighting the l1 norm of the coefficient sequence as is common, but by reweighting the l1 norm of the transformed object. An immediate consequence is the possibility of highly efficient data acquisition protocols by improving on a technique known as Compressive Sensing.

Abstract: In the performance evaluation of a protocol for an ad hoc network, the protocol should be tested under realistic conditions including, but not limited to, a sensible transmission range, limited buffer space for the storage of messages, representative data traffic models, and realistic movements of the mobile users (i.e., a mobility model). This paper is a survey of mobility models that are used in the simulations of ad hoc networks. We describe several mobility models that represent mobile nodes whose movements are independent of each other (i.e., entity mobility models) and several mobility models that represent mobile nodes whose movements are dependent on each other (i.e., group mobility models). The goal of this paper is to present a number of mobility models in order to offer researchers more informed choices when they are deciding upon a mobility model to use in their performance evaluations. Lastly, we present simulation results that illustrate the importance of choosing a mobility model in the simulation of an ad hoc network protocol. Specifically, we illustrate how the performance results of an ad hoc network protocol drastically change as a result of changing the mobility model simulated.