DuPont Pioneer

About: DuPont Pioneer is a company organization based out in Johnston, Iowa, United States. It is known for research contribution in the topics: Plant Part & Germplasm. The organization has 2908 authors who have published 6839 publications receiving 143709 citations.

Inbred corn line PHHB9

Abstract: According to the invention, there is provided an inbred corn line, designated PHHB9. This invention thus relates to the plants and seeds of inbred corn line PHHB9 and to methods for producing a corn plant produced by crossing the inbred line PHHB9 with itself or with another corn plant. This invention further relates to hybrid corn seeds and plants produced by crossing the inbred line PHHB9 with another corn line or plant.

Inbred corn line PHT47

Abstract: According to the invention, there is provided an inbred corn line, designated PHT47. This invention thus relates to the plants and seeds of inbred corn line PHT47 and to methods for producing a corn plant produced by crossing the inbred line PHT47 with itself or with another corn plant. This invention further relates to hybrid corn seeds and plants produced by crossing the inbred line PHT47 with another corn line or plant.

Inbred maize line PH0HC

Abstract: An inbred maize line, designated PH0HC, the plants and seeds of inbred maize line PH0HC, methods for producing a maize plant produced by crossing the inbred line PH0HC with itself or with another maize plant, and hybrid maize seeds and plants produced by crossing the inbred line PH0HC with another maize line or plant.

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

Abstract: Rice research has been enabled by access to the high quality reference genome sequence generated in 2005 by the International Rice Genome Sequencing Project (IRGSP). To further facilitate genomic-enabled research, we have updated and validated the genome assembly and sequence for the Nipponbare cultivar of Oryza sativa (japonica group). The Nipponbare genome assembly was updated by revising and validating the minimal tiling path of clones with the optical map for rice. Sequencing errors in the revised genome assembly were identified by re-sequencing the genome of two different Nipponbare individuals using the Illumina Genome Analyzer II/IIx platform. A total of 4,886 sequencing errors were identified in 321 Mb of the assembled genome indicating an error rate in the original IRGSP assembly of only 0.15 per 10,000 nucleotides. A small number (five) of insertions/deletions were identified using longer reads generated using the Roche 454 pyrosequencing platform. As the re-sequencing data were generated from two different individuals, we were able to identify a number of allelic differences between the original individual used in the IRGSP effort and the two individuals used in the re-sequencing effort. The revised assembly, termed Os-Nipponbare-Reference-IRGSP-1.0, is now being used in updated releases of the Rice Annotation Project and the Michigan State University Rice Genome Annotation Project, thereby providing a unified set of pseudomolecules for the rice community. A revised, error-corrected, and validated assembly of the Nipponbare cultivar of rice was generated using optical map data, re-sequencing data, and manual curation that will facilitate on-going and future research in rice. Detection of polymorphisms between three different Nipponbare individuals highlights that allelic differences between individuals should be considered in diversity studies.

Genetic properties of the maize nested association mapping population.

Abstract: Maize genetic diversity has been used to understand the molecular basis of phenotypic variation and to improve agricultural efficiency and sustainability. We crossed 25 diverse inbred maize lines to the B73 reference line, capturing a total of 136,000 recombination events. Variation for recombination frequencies was observed among families, influenced by local (cis) genetic variation. We identified evidence for numerous minor single-locus effects but little two-locus linkage disequilibrium or segregation distortion, which indicated a limited role for genes with large effects and epistatic interactions on fitness. We observed excess residual heterozygosity in pericentromeric regions, which suggested that selection in inbred lines has been less efficient in these regions because of reduced recombination frequency. This implies that pericentromeric regions may contribute disproportionally to heterosis.