Showing papers by "Federal University of Rio de Janeiro published in 2015"
Shadab Alam1, Franco D. Albareti2, Carlos Allende Prieto3, Carlos Allende Prieto4 +360 more•Institutions (102)
TL;DR: The third generation of the Sloan Digital Sky Survey (SDSS-III) took data from 2008 to 2014 using the original SDSS wide-field imager, the original and an upgraded multi-object fiber-fed optical spectrograph, a new near-infrared high-resolution spectrogram, and a novel optical interferometer.
Abstract: The third generation of the Sloan Digital Sky Survey (SDSS-III) took data from 2008 to 2014 using the original SDSS wide-field imager, the original and an upgraded multi-object fiber-fed optical spectrograph, a new near-infrared high-resolution spectrograph, and a novel optical interferometer. All the data from SDSS-III are now made public. In particular, this paper describes Data Release 11 (DR11) including all data acquired through 2013 July, and Data Release 12 (DR12) adding data acquired through 2014 July (including all data included in previous data releases), marking the end of SDSS-III observing. Relative to our previous public release (DR10), DR12 adds one million new spectra of galaxies and quasars from the Baryon Oscillation Spectroscopic Survey (BOSS) over an additional 3000 sq. deg of sky, more than triples the number of H-band spectra of stars as part of the Apache Point Observatory (APO) Galactic Evolution Experiment (APOGEE), and includes repeated accurate radial velocity measurements of 5500 stars from the Multi-Object APO Radial Velocity Exoplanet Large-area Survey (MARVELS). The APOGEE outputs now include measured abundances of 15 different elements for each star. In total, SDSS-III added 2350 sq. deg of ugriz imaging; 155,520 spectra of 138,099 stars as part of the Sloan Exploration of Galactic Understanding and Evolution 2 (SEGUE-2) survey; 2,497,484 BOSS spectra of 1,372,737 galaxies, 294,512 quasars, and 247,216 stars over 9376 sq. deg; 618,080 APOGEE spectra of 156,593 stars; and 197,040 MARVELS spectra of 5,513 stars. Since its first light in 1998, SDSS has imaged over 1/3 of the Celestial sphere in five bands and obtained over five million astronomical spectra.
2,471 citations
TL;DR: A measurement of the Higgs boson mass is presented based on the combined data samples of the ATLAS and CMS experiments at the CERN LHC in the H→γγ and H→ZZ→4ℓ decay channels.
Abstract: A measurement of the Higgs boson mass is presented based on the combined data samples of the ATLAS and CMS experiments at the CERN LHC in the H→γγ and H→ZZ→4l decay channels. The results are obtained from a simultaneous fit to the reconstructed invariant mass peaks in the two channels and for the two experiments. The measured masses from the individual channels and the two experiments are found to be consistent among themselves. The combined measured mass of the Higgs boson is mH=125.09±0.21 (stat)±0.11 (syst) GeV.
1,567 citations
TL;DR: In this paper, the performance of the various LHCb sub-detectors and the trigger system are described, using data taken from 2010 to 2012, and it is shown that the design criteria of the experiment have been met.
Abstract: The LHCb detector is a forward spectrometer at the Large Hadron Collider (LHC) at CERN. The experiment is designed for precision measurements of CP violation and rare decays of beauty and charm hadrons. In this paper the performance of the various LHCb sub-detectors and the trigger system are described, using data taken from 2010 to 2012. It is shown that the design criteria of the experiment have been met. The excellent performance of the detector has allowed the LHCb collaboration to publish a wide range of physics results, demonstrating LHCb's unique role, both as a heavy flavour experiment and as a general purpose detector in the forward region.
880 citations
TL;DR: In this article, the pentaquark-charmonium states were observed in the J/ψp channel in Λ0b→J/K−p decays and the significance of these resonances is more than 9 standard deviations.
Abstract: Observations of exotic structures in the J/ψp channel, that we refer to as pentaquark-charmonium states, in Λ0b→J/ψK−p decays are presented. The data sample corresponds to an integrated luminosity of 3/fb acquired with the LHCb detector from 7 and 8 TeV pp collisions. An amplitude analysis is performed on the three-body final-state that reproduces the two-body mass and angular distributions. To obtain a satisfactory fit of the structures seen in the J/ψp mass spectrum, it is necessary to include two Breit-Wigner amplitudes that each describe a resonant state. The significance of each of these resonances is more than 9 standard deviations. One has a mass of 4380±8±29 MeV and a width of 205±18±86 MeV, while the second is narrower, with a mass of 4449.8±1.7±2.5 MeV and a width of 39±5±19 MeV. The preferred JP assignments are of opposite parity, with one state having spin 3/2 and the other 5/2.
847 citations
TL;DR: Nearly a third of patients admitted to an intensive care unit develop delirium, and these patients are at increased risk of dying during admission, longer stays in hospital, and cognitive impairment after discharge.
Abstract: Objectives To determine the relation between delirium in critically ill patients and their outcomes in the short term (in the intensive care unit and in hospital) and after discharge from hospital. Design Systematic review and meta-analysis of published studies. Data sources PubMed, Embase, CINAHL, Cochrane Library, and PsychINFO, with no language restrictions, up to 1 January 2015. Eligibility criteria for selection studies Reports were eligible for inclusion if they were prospective observational cohorts or clinical trials of adults in intensive care units who were assessed with a validated delirium screening or rating system, and if the association was measured between delirium and at least one of four clinical endpoints (death during admission, length of stay, duration of mechanical ventilation, and any outcome after hospital discharge). Studies were excluded if they primarily enrolled patients with a neurological disorder or patients admitted to intensive care after cardiac surgery or organ/tissue transplantation, or centered on sedation management or alcohol or substance withdrawal. Data were extracted on characteristics of studies, populations sampled, identification of delirium, and outcomes. Random effects models and meta-regression analyses were used to pool data from individual studies. Results Delirium was identified in 5280 of 16 595 (31.8%) critically ill patients reported in 42 studies. When compared with control patients without delirium, patients with delirium had significantly higher mortality during admission (risk ratio 2.19, 94% confidence interval 1.78 to 2.70; P Conclusions Nearly a third of patients admitted to an intensive care unit develop delirium, and these patients are at increased risk of dying during admission, longer stays in hospital, and cognitive impairment after discharge.
664 citations
TL;DR: In this paper, the branching fraction ratio of the tau lepton was measured at the LHCb collider, which is 2.1 standard deviations larger than the value expected from lepton universality in the standard model.
Abstract: The branching fraction ratio R(D-*) = B((B) over bar (0) -> D-*(+)tau(-)(nu) over bar (tau))/B((B) over bar (0) -> D-*(+)mu(-)(nu) over bar (mu)) is measured using a sample of proton-proton collision data corresponding to 3.0 fb(-1) of integrated luminosity recorded by the LHCb experiment during 2011 and 2012. The tau lepton is identified in the decay mode tau(-) -> mu(-)(nu) over bar (mu)nu(tau). The semitauonic decay is sensitive to contributions from non-standard-model particles that preferentially couple to the third generation of fermions, in particular, Higgs-like charged scalars. A multidimensional fit to kinematic distributions of the candidate (B) over bar (0) decays gives R(D-*) = 0.336 +/- 0.027(stat) +/- 0.030(syst). This result, which is the first measurement of this quantity at a hadron collider, is 2.1 standard deviations larger than the value expected from lepton universality in the standard model.
523 citations
Vardan Khachatryan1, Albert M. Sirunyan1, Armen Tumasyan1, Wolfgang Adam2 +2802 more•Institutions (215)
TL;DR: In this paper, the branching fractions of the B meson (B-s(0)) and the B-0 meson decaying into two oppositely charged muons (mu(+) and mu(-)) were observed.
Abstract: The standard model of particle physics describes the fundamental particles and their interactions via the strong, electromagnetic and weak forces. It provides precise predictions for measurable quantities that can be tested experimentally. The probabilities, or branching fractions, of the strange B meson (B-s(0)) and the B-0 meson decaying into two oppositely charged muons (mu(+) and mu(-)) are especially interesting because of their sensitivity to theories that extend the standard model. The standard model predicts that the B-s(0)->mu(+)mu(-) and B-0 ->mu(+)mu(-) decays are very rare, with about four of the former occurring for every billion B-s(0) mesons produced, and one of the latter occurring for every ten billion B-0 mesons(1). A difference in the observed branching fractions with respect to the predictions of the standard model would provide a direction in which the standard model should be extended. Before the Large Hadron Collider (LHC) at CERN2 started operating, no evidence for either decay mode had been found. Upper limits on the branching fractions were an order of magnitude above the standard model predictions. The CMS (Compact Muon Solenoid) and LHCb(Large Hadron Collider beauty) collaborations have performed a joint analysis of the data from proton-proton collisions that they collected in 2011 at a centre-of-mass energy of seven teraelectronvolts and in 2012 at eight teraelectronvolts. Here we report the first observation of the B-s(0)->mu(+)mu(-) decay, with a statistical significance exceeding six standard deviations, and the best measurement so far of its branching fraction. Furthermore, we obtained evidence for the B-0 ->mu(+)mu(-) decay with a statistical significance of three standard deviations. Both measurements are statistically compatible with standard model predictions and allow stringent constraints to be placed on theories beyond the standard model. The LHC experiments will resume taking data in 2015, recording proton-proton collisions at a centre-of-mass energy of 13 teraelectronvolts, which will approximately double the production rates of B-s(0) and B-0 mesons and lead to further improvements in the precision of these crucial tests of the standard model.
467 citations
TL;DR: A review of the research done during the last years in the area of the cement-based composites reinforced with cellulose fibers is presented in this article, where the main achievements found have been the development of durable cement composites with optimized fiber-matrix adhesion.
438 citations
TL;DR: The results confirm that the lipases immobilized on octyl agarose presented their open form stabilized while the covalent preparation maintains a closing/opening equilibrium that may be modulated by altering the medium.
410 citations
University of Toronto1, Enel2, Beijing Normal University3, TERI University4, De La Salle University5, Seoul National University6, Federal University of Rio de Janeiro7, University of California, Los Angeles8, Imperial College London9, University of Paris10, Trisakti University11, University of Lagos12, University of Tehran13, Bangladesh University of Engineering and Technology14, Hunter College15, United States Environmental Protection Agency16, NED University of Engineering and Technology17, Universidad de Guanajuato18, Istanbul Technical University19
TL;DR: The quantification of energy and material flows for the world’s 27 megacities with populations greater than 10 million people as of 2010 is a major undertaking, not previously achieved and largely consistent with scaling laws established in the emerging science of cities.
Abstract: Understanding the drivers of energy and material flows of cities is important for addressing global environmental challenges. Accessing, sharing, and managing energy and material resources is particularly critical for megacities, which face enormous social stresses because of their sheer size and complexity. Here we quantify the energy and material flows through the world’s 27 megacities with populations greater than 10 million people as of 2010. Collectively the resource flows through megacities are largely consistent with scaling laws established in the emerging science of cities. Correlations are established for electricity consumption, heating and industrial fuel use, ground transportation energy use, water consumption, waste generation, and steel production in terms of heating-degree-days, urban form, economic activity, and population growth. The results help identify megacities exhibiting high and low levels of consumption and those making efficient use of resources. The correlation between per capita electricity use and urbanized area per capita is shown to be a consequence of gross building floor area per capita, which is found to increase for lower-density cities. Many of the megacities are growing rapidly in population but are growing even faster in terms of gross domestic product (GDP) and energy use. In the decade from 2001–2011, electricity use and ground transportation fuel use in megacities grew at approximately half the rate of GDP growth.
383 citations
TL;DR: In this article, compensated optical lattice techniques applied to the Hubbard model now enable unprecedented low temperatures to be reached for fermions, only 1.4 times that of the antiferromagnetic phase transition, approaching the limits of present modelling techniques.
Abstract: Ultracold atomic gases in optical lattices potentially offer simulations of condensed-matter phenomena beyond what theory and computations can access; compensated optical lattice techniques applied to the Hubbard model now enable unprecedented low temperatures to be reached for fermions — only 1.4 times that of the antiferromagnetic phase transition, approaching the limits of present modelling techniques.
TL;DR: In this article, a low viscosity, cheap, biodegradable and hydrophobic eutectic solvents from natural resources were synthesized and analyzed using NMR and FTIR spectroscopy in order to check their structures and purities.
Abstract: Inspired by one of the major problems in the pharmaceutical industry, we advantageously used the formation of eutectic mixtures to synthesize new solvents. The aim of this work is to identify low viscosity, cheap, biodegradable and hydrophobic eutectic solvents from natural resources. Consequently, novel eutectic mixtures based on dl-menthol and naturally occurring acids, namely pyruvic acid, acetic acid, l-lactic acid, and lauric acid, were synthesized and are here reported for the first time. The obtained dl-menthol-based eutectic mixtures were analyzed using NMR and FTIR spectroscopy in order to check their structures and purities and to confirm the interaction of the two compounds leading to the eutectic formation. Important solvent thermophysical properties, such as density and viscosity, of the prepared eutectic solvents with different water contents (dried and water-saturated) were measured. Finally, taking advantage of their hydrophobic character, namely the formation of two phases with water at r...
Johns Hopkins University1, Pfizer2, University of Manitoba3, University of Cologne4, University of Würzburg5, Johnson & Johnson6, Catholic University of Korea7, Federal University of Rio de Janeiro8, University of Alabama at Birmingham9, Peter MacCallum Cancer Centre10, Federal University of Paraná11, Cornell University12, University of Florida13, Katholieke Universiteit Leuven14
TL;DR: The primary end point of this study was all-cause mortality at 6 weeks, rather than the composite global response, which had been shown to most closely approximate the deaths attributable to IA rather than deaths caused by underlying disease.
Abstract: Background Invasive aspergillosis (IA) is associated with poor outcomes in patients with hematologic malignancies (HMs) and hematopoietic cell transplantation (HCT). Small studies suggest a role for combination antifungal therapy. Objective To assess the safety and efficacy of voriconazole and anidulafungin compared with voriconazole monotherapy for treatment of IA. Design Randomized, double-blind, placebo-controlled multicenter trial. (ClinicalTrials.gov: NCT00531479). Setting 93 international sites. Patients 454 patients with HM or HCT and suspected or documented IA were randomly assigned to treatment with voriconazole and anidulafungin or placebo. Primary analysis was done in the modified intention-to-treat population of 277 patients in whom IA was confirmed. Measurements The primary outcome was 6-week mortality; secondary outcomes included 12-week mortality, mortality in major subgroups, and safety measures. Results Mortality rates at 6 weeks were 19.3% (26 of 135) for combination therapy and 27.5% (39 of 142) for monotherapy (difference, -8.2 percentage points [95% CI, -19.0 to 1.5]; P = 0.087). Secondary mortality outcomes favored combination therapy. Multivariable regression analysis suggested that maximum galactomannan value, Karnofsky score, and baseline platelet count had prognostic significance. Most patients (218 of 277 [78.7%]) had IA diagnosis established by radiographic findings and maximum galactomannan positivity. In a post hoc analysis of this dominant subgroup, 6-week mortality was lower in combination therapy than monotherapy (15.7% [17 of 108] vs. 27.3% [30 of 110]; difference, -11.5 percentage points [CI, -22.7 to -0.4]; P = 0.037). Safety measures, including hepatotoxicity, were not different. Limitations Mortality at 6 weeks was higher than expected, and the difference in mortality was lower than expected, which reduced power to detect a treatment effect. Enrollment was restricted to patients with HM or HCT, which limited generalizability. Conclusion Compared with voriconazole monotherapy, combination therapy with anidulafungin led to higher survival in subgroups of patients with IA. Limitations in power preclude definitive conclusions about superiority. Primary funding source Pfizer.
State University of Campinas1, Museu Paraense Emílio Goeldi2, Mercosur3, Universidade Federal de Pelotas4, University of São Paulo5, Federal University of Rio de Janeiro6, Federal University of Pernambuco7, University of Guelph8, Pontifícia Universidade Católica do Paraná9, Universidade Federal do Rio Grande do Sul10, Universidade Feevale11, Cornell University12, Instituto Butantan13, Federal University of Uberlandia14, Federal University of São Paulo15, National Institute of Amazonian Research16
TL;DR: For the first time, this article presented a completely new and annotated version of the Brazilian Ornithological Records Committee (CBRO) checklists of Brazilian birds almost every year and highlighted the need for proper enforcement of political tools, laws and international commitments assumed by the country to preserve its biodiversity.
Abstract: Since 2005, the Brazilian Ornithological Records Committee (CBRO) has published updated checklists of Brazilian birds almost every year. Herein, we present a completely new and annotated version of our checklist. For the first time, we list all bird subspecies known from Brazil that are currently accepted by at least one key ornithological reference work. The inclusion of the subspecies should be seen as a synthesis, and not as a taxonomic endorsement. As such, we include in the new checklist 1919 avian species, 910 of which are treated as polytypic in reference works (2042 subspecies), totaling 3051 taxa at the species and subspecies level. We anticipate that several of the subspecies included in our list may be subject to future taxonomic upgrades to species status, while others will probably be shown to be invalid in the light of future taxonomic studies. The results highlight Brazil as a megadiverse country and reinforce the need for proper enforcement of political tools, laws and international commitments assumed by the country to preserve its biodiversity.
TL;DR: This work presents a flexible, modular, and computationally efficient software system that estimates multiple aspects of travel demand using call detail records from mobile phones in conjunction with open- and crowdsourced geospatial data, census records, and surveys.
Abstract: Rapid urbanization is placing increasing stress on already burdened transportation infrastructure. Ubiquitous mobile computing and the massive data it generates presents new opportunities to measure the demand for this infrastructure, diagnose problems, and plan for the future. However, before these benefits can be realized, methods and models must be updated to integrate these new data sources into existing urban and transportation planning frameworks for estimating travel demand and infrastructure usage. While recent work has made great progress extracting valid and useful measurements from new data resources, few present end-to-end solutions that transform and integrate raw, massive data into estimates of travel demand and infrastructure performance. Here we present a flexible, modular, and computationally efficient software system to fill this gap. Our system estimates multiple aspects of travel demand using call detail records (CDRs) from mobile phones in conjunction with open- and crowdsourced geospatial data, census records, and surveys. We bring together numerous existing and new algorithms to generate representative origin–destination matrices, route trips through road networks constructed using open and crowd-sourced data repositories, and perform analytics on the system’s output. We also present an online, interactive visualization platform to communicate these results to researchers, policy makers, and the public. We demonstrate the flexibility of this system by performing analyses on multiple cities around the globe. We hope this work will serve as unified and comprehensive guide to integrating new big data resources into customary transportation demand modeling.
TL;DR: An improved reference sequence of the single-copy and middle-repetitive regions of the genome is reported, produced using cytogenetic mapping to mitotic and polytene chromosomes, clone-based finishing and BAC fingerprint verification, ordering of scaffolds by alignment to cDNA sequences, incorporation of other map and sequence data, and validation by whole-genome optical restriction mapping.
Abstract: Drosophila melanogaster plays an important role in molecular, genetic, and genomic studies of heredity, development, metabolism, behavior, and human disease. The initial reference genome sequence reported more than a decade ago had a profound impact on progress in Drosophila research, and improving the accuracy and completeness of this sequence continues to be important to further progress. We previously described improvement of the 117-Mb sequence in the euchromatic portion of the genome and 21 Mb in the heterochromatic portion, using a whole-genome shotgun assembly, BAC physical mapping, and clone-based finishing. Here, we report an improved reference sequence of the single-copy and middle-repetitive regions of the genome, produced using cytogenetic mapping to mitotic and polytene chromosomes, clone-based finishing and BAC fingerprint verification, ordering of scaffolds by alignment to cDNA sequences, incorporation of other map and sequence data, and validation by whole-genome optical restriction mapping. These data substantially improve the accuracy and completeness of the reference sequence and the order and orientation of sequence scaffolds into chromosome arm assemblies. Representation of the Y chromosome and other heterochromatic regions is particularly improved. The new 143.9-Mb reference sequence, designated Release 6, effectively exhausts clone-based technologies for mapping and sequencing. Highly repeat-rich regions, including large satellite blocks and functional elements such as the ribosomal RNA genes and the centromeres, are largely inaccessible to current sequencing and assembly methods and remain poorly represented. Further significant improvements will require sequencing technologies that do not depend on molecular cloning and that produce very long reads.
TL;DR: Clinicians are guided as to when the disease should be suspected, the appropriate diagnostic evaluation for those with known or suspected amyloidosis, and the interventions currently available for affected patients are reviewed.
Pohang University of Science and Technology1, Harvard University2, Jagiellonian University3, Utrecht University4, Lund University5, North Shore-LIJ Health System6, Morehouse School of Medicine7, National Research Council8, Autonomous University of Barcelona9, French Institute of Health and Medical Research10, Semmelweis University11, University of Melbourne12, Cardiff University13, Yale University14, University of Tennessee Health Science Center15, Cedars-Sinai Medical Center16, University of Gothenburg17, University of Oxford18, University of Duisburg-Essen19, La Trobe University20, German Cancer Research Center21, Ghent University22, University of Queensland23, Seoul National University24, London Metropolitan University25, Council of Scientific and Industrial Research26, Mayo Clinic27, Dankook University28, Aalborg University29, Kyung Hee University30, Ewha Womans University31, University of Toronto32, Erasmus University Rotterdam33, Temple University34, University of Pennsylvania35, University of Valencia36, QIMR Berghofer Medical Research Institute37, Université catholique de Louvain38, University of Freiburg39, University of Amsterdam40, Walter and Eliza Hall Institute of Medical Research41, Oswaldo Cruz Foundation42, Federal University of Rio de Janeiro43, Icahn School of Medicine at Mount Sinai44, University of California, Los Angeles45, University of Helsinki46, Queensland University of Technology47, Washington University in St. Louis48, Hiroshima University49, Hannover Medical School50, Umeå University51, Johns Hopkins University52, Ludwig Maximilian University of Munich53
TL;DR: An improved version of EVpedia, a public database for EVs research, is presented, which contains a database of publications and vesicular components, identification of orthologous vesicle components, bioinformatic tools and a personalized function.
Abstract: Motivation: Extracellular vesicles (EVs) are spherical bilayered proteolipids, harboring various bioactive molecules. Due to the complexity of the vesicular nomenclatures and components, online searches for EV-related publications and vesicular components are currently challenging.
Results: We present an improved version of EVpedia, a public database for EVs research. This community web portal contains a database of publications and vesicular components, identification of orthologous vesicular components, bioinformatic tools and a personalized function. EVpedia includes 6879 publications, 172 080 vesicular components from 263 high-throughput datasets, and has been accessed more than 65 000 times from more than 750 cities. In addition, about 350 members from 73 international research groups have participated in developing EVpedia. This free web-based database might serve as a useful resource to stimulate the emerging field of EV research.
Availability and implementation: The web site was implemented in PHP, Java, MySQL and Apache, and is freely available at http://evpedia.info.
Federal University of Rio de Janeiro1, Simon Fraser University2, National University of La Plata3, Oswaldo Cruz Foundation4, Washington University in St. Louis5, University of the Republic6, European Bioinformatics Institute7, National Institutes of Health8, Federal University of Uberlandia9, Universidade Federal de Minas Gerais10, Sao Paulo State University11, State University of Norte Fluminense12, Johns Hopkins University13, University of Notre Dame14, Universidade Federal Rural do Rio de Janeiro15, Pompeu Fabra University16, Centre national de la recherche scientifique17, University of Toronto18, Centers for Disease Control and Prevention19, Instituto Politécnico Nacional20, Florida International University21, Universidade Federal do Espírito Santo22, University of Illinois at Urbana–Champaign23, University of Santiago de Compostela24, Virginia Tech25, University of Cambridge26, University of Manitoba27
TL;DR: The first genome sequence of a nondipteran insect vector of an important human parasitic disease is described, which provides critical information on the physiology and evolution of this important vector species and should be instrumental for the development of innovative disease control methods.
Abstract: Rhodnius prolixus not only has served as a model organism for the study of insect physiology, but also is a major vector of Chagas disease, an illness that affects approximately seven million people worldwide. We sequenced the genome of R. prolixus, generated assembled sequences covering 95% of the genome (∼ 702 Mb), including 15,456 putative protein-coding genes, and completed comprehensive genomic analyses of this obligate blood-feeding insect. Although immune-deficiency (IMD)-mediated immune responses were observed, R. prolixus putatively lacks key components of the IMD pathway, suggesting a reorganization of the canonical immune signaling network. Although both Toll and IMD effectors controlled intestinal microbiota, neither affected Trypanosoma cruzi, the causal agent of Chagas disease, implying the existence of evasion or tolerance mechanisms. R. prolixus has experienced an extensive loss of selenoprotein genes, with its repertoire reduced to only two proteins, one of which is a selenocysteine-based glutathione peroxidase, the first found in insects. The genome contained actively transcribed, horizontally transferred genes from Wolbachia sp., which showed evidence of codon use evolution toward the insect use pattern. Comparative protein analyses revealed many lineage-specific expansions and putative gene absences in R. prolixus, including tandem expansions of genes related to chemoreception, feeding, and digestion that possibly contributed to the evolution of a blood-feeding lifestyle. The genome assembly and these associated analyses provide critical information on the physiology and evolution of this important vector species and should be instrumental for the development of innovative disease control methods.
Radboud University Nijmegen1, Katholieke Universiteit Leuven2, University of Lausanne3, Karolinska University Hospital4, Carlos III Health Institute5, Florey Institute of Neuroscience and Mental Health6, University of Milan7, Paris Descartes University8, University of Oslo9, University of Alabama at Birmingham10, University of Münster11, University of Innsbruck12, University Hospital of South Manchester NHS Foundation Trust13, Universidade Federal de Ciências da Saúde de Porto Alegre14, University College London15, Hacettepe University16, University of Wisconsin-Madison17, Federal University of Rio de Janeiro18
TL;DR: Azole-resistant A. fumigatus was more frequently found than previously acknowledged, causing resistant invasive and noninvasive aspergillosis and severely compromising clinical use of azoles.
Abstract: To investigate azole resistance in clinical Aspergillus isolates, we conducted prospective multicenter international surveillance. A total of 3,788 Aspergillus isolates were screened in 22 centers from 19 countries. Azole-resistant A. fumigatus was more frequently found (3.2% prevalence) than previously acknowledged, causing resistant invasive and noninvasive aspergillosis and severely compromising clinical use of azoles.
TL;DR: Recent advances are discussed that have illuminated the chemical nature of the toxic species and the deleterious impact they have on synapses, and have culminated in the proposal of an Aβ oligomer hypothesis for Alzheimer’s pathogenesis.
Abstract: Alzheimer’s disease (AD) is the most common form of dementia in the elderly, and affects millions of people worldwide. As the number of AD cases continues to increase in both developed and developing countries, finding therapies that effectively halt or reverse disease progression constitutes a major research and public health challenge. Since the identification of the amyloid-b peptide (Ab) as the major component of the amyloid plaques that are characteristically found in AD brains, a major effort has aimed to determine whether and how Ab leads to memory loss and cognitive impairment. A large body of evidence accumulated in the past 15 years supports a pivotal role of soluble Ab oligomers (AbOs) in synapse failure and neuronal dysfunction in AD. Nonetheless, a number of basic questions, including the exact molecular composition of the synaptotoxic oligomers, the identity of the receptor(s) to which they bind, and the signaling pathways that ultimately lead to synapse failure, remain to be definitively answered. Here, we discuss recent advances that have illuminated our understanding of the chemical nature of the toxic species and the deleterious impact they have on synapses, and have culminated in the proposal of an Ab oligomer hypothesis for Alzheimer’s pathogenesis. We also highlight outstanding questions and challenges in AD research that should be addressed to allow translation of research findings into effective AD therapies.
TL;DR: In this article, a strategy for conservation of Brazil's NFE should encompass the following elements: (1) creation of new large protected areas in NFE, (2) enforcement of legal restrictions of land use; (3) extension of subsidy programs and governance commitments to NFE; (4) improvement of ecosystem management and sustainable use in N FE; and (5) monitoring of land change change.
Abstract: In the past decades, Brazil made important progress in the conservation of forest ecosystems. Non-forest ecosystems (NFE), in contrast, have been neglected, even though they cover large parts of the country and have biodiversity levels comparable to forests. To avoid losing much of its biodiversity and ecosystem services, conservation and sustainable land use policies in Brazil need to be extended to NFE. A strategy for conservation of Brazil's NFE should encompass the following elements: (1) creation of new large protected areas in NFE; (2) enforcement of legal restrictions of land use; (3) extension of subsidy programs and governance commitments to NFE; (4) improvement of ecosystem management and sustainable use in NFE; and (5) improvement of monitoring of land use change in NFE. If Brazil managed to extend its conservation successes to NFE, it not only would contribute significantly to conservation of its biodiversity, but also could take the lead in conservation of NFE world-wide.
TL;DR: The Standard Model (SM) Higgs boson hypothesis is tested against several alternative spin scenarios, including non-SM spin-0 and spin-2 models with universal and non-universal couplings to fermions and vector bosons, and the observed distributions of variables sensitive to the non- SM tensor couplings are compatible with the SM predictions.
Abstract: Studies of the spin, parity and tensor couplings of the Higgs boson in the [Formula: see text], [Formula: see text] and [Formula: see text] decay processes at the LHC are presented. The investigations are based on [Formula: see text] of pp collision data collected by the ATLAS experiment at [Formula: see text] TeV and [Formula: see text] TeV. The Standard Model (SM) Higgs boson hypothesis, corresponding to the quantum numbers [Formula: see text], is tested against several alternative spin scenarios, including non-SM spin-0 and spin-2 models with universal and non-universal couplings to fermions and vector bosons. All tested alternative models are excluded in favour of the SM Higgs boson hypothesis at more than 99.9 % confidence level. Using the [Formula: see text] and [Formula: see text] decays, the tensor structure of the interaction between the spin-0 boson and the SM vector bosons is also investigated. The observed distributions of variables sensitive to the non-SM tensor couplings are compatible with the SM predictions and constraints on the non-SM couplings are derived.
TL;DR: In this paper, a search for the branching fraction of B_s^0 \to \overline{D}^{0} f_{0}(980) = 3.1\,(3.4) \times 10^{-6}$ is performed using collision data recorded by the LHCb experiment during 2011 and 2012.
Abstract: A search for $B_s^0 \to \overline{D}^{0} f_{0}(980)$ decays is performed using $3.0\, {\rm fb}^{-1}$ of $pp$ collision data recorded by the LHCb experiment during 2011 and 2012. The $f_{0}(980)$ meson is reconstructed through its decay to the $\pi^{+}\pi^{-}$ final state in the mass window $900\, {\rm MeV}/c^{2} < m(\pi^{+}\pi^{-}) < 1080\, {\rm MeV}/c^{2}$. No significant signal is observed. The first upper limits on the branching fraction of $\mathcal{B}(B_s^0 \to \overline{D}^{0} f_{0}(980)) < 3.1\,(3.4) \times 10^{-6}$ are set at $90\,\%$ ($95\,\%$) confidence level.
01 Dec 2015
TL;DR: A survey of data-intensive scientific workflow management in SWfMSs and their parallelization techniques is provided based on aSWfMS functional architecture and a comparative analysis of the existing solutions is given.
Abstract: Nowadays, more and more computer-based scientific experiments need to handle massive amounts of data. Their data processing consists of multiple computational steps and dependencies within them. A data-intensive scientific workflow is useful for modeling such process. Since the sequential execution of data-intensive scientific workflows may take much time, Scientific Workflow Management Systems (SWfMSs) should enable the parallel execution of data-intensive scientific workflows and exploit the resources distributed in different infrastructures such as grid and cloud. This paper provides a survey of data-intensive scientific workflow management in SWfMSs and their parallelization techniques. Based on a SWfMS functional architecture, we give a comparative analysis of the existing solutions. Finally, we identify research issues for improving the execution of data-intensive scientific workflows in a multisite cloud.
TL;DR: Patisiran was generally well tolerated and resulted in significant dose-dependent knockdown of transthyretin protein in patients with FAP, and is currently in phase III development.
Abstract: Transthyretin-mediated amyloidosis is an inherited, progressively debilitating disease caused by mutations in the transthyretin gene. This study evaluated the safety, tolerability, pharmacokinetics, and pharmacodynamics of multiple doses of patisiran (ALN-TTR02), a small interfering RNA encapsulated within lipid nanoparticles, in patients with transthyretin-mediated familial amyloid polyneuropathy (FAP). In this phase II study, patients with FAP were administered 2 intravenous infusions of patisiran at one of the following doses: 0.01 (n = 4), 0.05 (n = 3), 0.15 (n = 3), or 0.3 (n = 7) mg/kg every 4 weeks (Q4W), or 0.3 mg/kg (n = 12) every 3 weeks (Q3W). Of 29 patients in the intent-to-treat population, 26 completed the study. Administration of patisiran led to rapid, dose-dependent, and durable knockdown of transthyretin, with the maximum effect seen with patisiran 0.3 mg/kg; levels of mutant and wild-type transthyretin were reduced to a similar extent in Val30Met patients. A mean level of knockdown exceeding 85 % after the second dose, with maximum knockdown of 96 %, was observed for the Q3W dose. The most common treatment-related adverse event (AE) was mild-to-moderate infusion-related reactions in 10.3 % of patients. Four serious AEs (SAEs) were reported in 1 patient administered 0.3 mg/kg Q3W (urinary tract infection, sepsis, nausea, vomiting), and 1 patient administered 0.3 mg/kg Q4W had 1 SAE (extravasation-related cellulitis). Patisiran was generally well tolerated and resulted in significant dose-dependent knockdown of transthyretin protein in patients with FAP. Patisiran 0.3 mg/kg Q3W is currently in phase III development. NCT01617967
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TL;DR: An overview of recent theoretical and experimental efforts to underpin the dynamics of entanglement under the influence of noise is presented, and how it evolves due to the unavoidable interaction of the entangled system with its surroundings is surveyed.
Abstract: One of the greatest challenges in the fields of quantum information processing and quantum technologies is the detailed coherent control over each and every constituent of quantum systems with an ever increasing number of particles. Within this endeavor, harnessing of many-body entanglement against the detrimental effects of the environment is a major pressing issue. Besides being an important concept from a fundamental standpoint, entanglement has been recognized as a crucial resource for quantum speed-ups or performance enhancements over classical methods. Understanding and controlling many-body entanglement in open systems may have strong implications in quantum computing, quantum simulations of many-body systems, secure quantum communication or cryptography, quantum metrology, our understanding of the quantum-to-classical transition, and other important questions of quantum foundations.In this paper we present an overview of recent theoretical and experimental efforts to underpin the dynamics of entanglement under the influence of noise. Entanglement is thus taken as a dynamic quantity on its own, and we survey how it evolves due to the unavoidable interaction of the entangled system with its surroundings. We analyze several scenarios, corresponding to different families of states and environments, which render a very rich diversity of dynamical behaviors.In contrast to single-particle quantities, like populations and coherences, which typically vanish only asymptotically in time, entanglement may disappear at a finite time. In addition, important classes of entanglement display an exponential decay with the number of particles when subject to local noise, which poses yet another threat to the already-challenging scaling of quantum technologies. Other classes, however, turn out to be extremely robust against local noise. Theoretical results and recent experiments regarding the difference between local and global decoherence are summarized. Control and robustness-enhancement techniques, scaling laws, statistical and geometrical aspects of multipartite-entanglement decay are also reviewed; all in order to give a broad picture of entanglement dynamics in open quantum systems addressed to both theorists and experimentalists inside and outside the field of quantum information.
TL;DR: In this paper, the authors give a balanced account of the experimental and theoretical advances acquired over the last decade in the field of near-barrier fusion reactions induced by weakly bound stable and unstable nuclei.
TL;DR: In this article, the authors presented the first hybrid measurement of the average muon number in air showers at ultrahigh energies, initiated by cosmic rays with zenith angles between 62° and 80°.
Abstract: We present the first hybrid measurement of the average muon number in air showers at ultrahigh energies, initiated by cosmic rays with zenith angles between 62° and 80°. The measurement is based on 174 hybrid events recorded simultaneously with the surface detector array and the fluorescence detector of the Pierre Auger Observatory. The muon number for each shower is derived by scaling a simulated reference profile of the lateral muon density distribution at the ground until it fits the data. A 1019eV shower with a zenith angle of 67°, which arrives at the surface detector array at an altitude of 1450 m above sea level, contains on average (2.68±0.04±0.48(sys))×107 muons with energies larger than 0.3 GeV. The logarithmic gain dlnNμ/dlnE of muons with increasing energy between 4×1018eV and 5×1019eV is measured to be (1.029±0.024±0.030(sys)).
TL;DR: In this article, track reconstruction efficiency at LHCb using J/psi -> mu(+)mu(-) decays is determined. But the accuracy of track reconstruction was not analyzed.
Abstract: The determination of track reconstruction efficiencies at LHCb using J/psi -> mu(+)mu(-) decays is presented. Efficiencies above 95% are found for the data taking periods in 2010, 2011, and 2012. The ratio of the track reconstruction efficiency of muons in data and simulation is compatible with unity and measured with an uncertainty of 0.8% for data taking in 2010, and at a precision of 0.4% for data taking in 2011 and 2012. For hadrons an additional 1.4% uncertainty due to material interactions is assumed. This result is crucial for accurate cross section and branching fraction measurements in LHCb.