Institution
Florida Museum of Natural History
Archive•Gainesville, Florida, United States•
About: Florida Museum of Natural History is a archive organization based out in Gainesville, Florida, United States. It is known for research contribution in the topics: Population & Genus. The organization has 771 authors who have published 2647 publications receiving 95761 citations.
Topics: Population, Genus, Monophyly, Biodiversity, Phylogenetic tree
Papers published on a yearly basis
Papers
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TL;DR: Reconstructed time lines, causes, and consequences of change in 12 once diverse and productive estuaries and coastal seas worldwide show similar patterns: Human impacts have depleted >90% of formerly important species, destroyed >65% of seagrass and wetland habitat, degraded water quality, and accelerated species invasions.
Abstract: Estuarine and coastal transformation is as old as civilization yet has dramatically accelerated over the past 150 to 300 years. Reconstructed time lines, causes, and consequences of change in 12 once diverse and productive estuaries and coastal seas worldwide show similar patterns: Human impacts have depleted >90% of formerly important species, destroyed >65% of seagrass and wetland habitat, degraded water quality, and accelerated species invasions. Twentieth-century conservation efforts achieved partial recovery of upper trophic levels but have so far failed to restore former ecosystem structure and function. Our results provide detailed historical baselines and quantitative targets for ecosystem-based management and marine conservation.
2,795 citations
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Commonwealth Scientific and Industrial Research Organisation1, Rutgers University2, Heidelberg Institute for Theoretical Studies3, University of Jena4, University of Bonn5, University of Vienna6, Naturhistorisches Museum7, University of Tsukuba8, Landcare Research9, Johns Hopkins University10, University of Hamburg11, Ehime University12, Florida Museum of Natural History13, Staatliches Museum für Naturkunde Stuttgart14, Australian National University15, National Evolutionary Synthesis Center16, Macquarie University17, American Museum of Natural History18, University of Memphis19, University of Guadalajara20, Bavarian Academy of Sciences and Humanities21, Natural History Museum22, Karlsruhe Institute of Technology23, California Academy of Sciences24, South China Agricultural University25, North Carolina State University26, Hokkaido University27
TL;DR: The phylogeny of all major insect lineages reveals how and when insects diversified and provides a comprehensive reliable scaffold for future comparative analyses of evolutionary innovations among insects.
Abstract: Insects are the most speciose group of animals, but the phylogenetic relationships of many major lineages remain unresolved. We inferred the phylogeny of insects from 1478 protein-coding genes. Phylogenomic analyses of nucleotide and amino acid sequences, with site-specific nucleotide or domain-specific amino acid substitution models, produced statistically robust and congruent results resolving previously controversial phylogenetic relations hips. We dated the origin of insects to the Early Ordovician [~479 million years ago (Ma)], of insect flight to the Early Devonian (~406 Ma), of major extant lineages to the Mississippian (~345 Ma), and the major diversification of holometabolous insects to the Early Cretaceous. Our phylogenomic study provides a comprehensive reliable scaffold for future comparative analyses of evolutionary innovations among insects.
1,998 citations
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TL;DR: For example, this paper found that between 8 and 6 million years ago, there was a global increase in the biomass of plants using C4 photosynthesis as indicated by changes in the carbon isotope ratios of fossil tooth enamel in Asia, Africa, North America and South America.
Abstract: Between 8 and 6 million years ago, there was a global increase in the biomass of plants using C4 photosynthesis as indicated by changes in the carbon isotope ratios of fossil tooth enamel in Asia, Africa, North America and South America. This abrupt and widespread increase in C4 biomass may be related to a decrease in atmospheric CO2 concentrations below a threshold that favoured C3-photosynthesizing plants. The change occurred earlier at lower latitudes, as the threshold for C3 photosynthesis is higher at warmer temperatures.
1,886 citations
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TL;DR: This is the first examination of barcoding performance in a comprehensively sampled, diverse group (cypraeid marine gastropods, or cowries) and employs a novel phylogenetic approach to calculate intraspecific variation and interspecific divergence.
Abstract: DNA barcoding has attracted attention with promises to aid in species identification and discovery; however, few wellsampled datasets are available to test its performance. We provide the first examination of barcoding performance in a comprehensively sampled, diverse group (cypraeid marine gastropods, or cowries). We utilize previous methods for testing performance and employ a novel phylogenetic approach to calculate intraspecific variation and interspecific divergence. Error rates are estimated for (1) identifying samples against a well-characterized phylogeny, and (2) assisting in species discovery for partially known groups. We find that the lowest overall error for species identification is 4%. In contrast, barcoding performs poorly in incompletely sampled groups. Here, species delineation relies on the use of thresholds, set to differentiate between intraspecific variation and interspecific divergence. Whereas proponents envision a ‘‘barcoding gap’’ between the two, we find substantial overlap, leading to minimal error rates of ;17% in cowries. Moreover, error rates double if only traditionally recognized species are analyzed. Thus, DNA barcoding holds promise for identification in taxonomically well-understood and thoroughly sampled clades. However, the use of thresholds does not bode well for delineating closely related species in taxonomically understudied groups. The promise of barcoding will be realized only if based on solid taxonomic foundations. Citation: Meyer CP, Paulay G (2005) DNA barcoding: Error rates based on comprehensive sampling. PLoS Biol 3(12): e422.
1,701 citations
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Simon Fraser University1, Newbury College2, Virginia Institute of Marine Science3, Natural Environment Research Council4, Charles Darwin University5, National Marine Fisheries Service6, National Institute of Water and Atmospheric Research7, International Union for Conservation of Nature and Natural Resources8, James Cook University9, Florida Museum of Natural History10, Old Dominion University11, Moss Landing Marine Laboratories12, Australian Institute of Marine Science13, Conservation International14, Commonwealth Scientific and Industrial Research Organisation15
TL;DR: In this article, the authors present the first systematic analysis of threat for a globally distributed lineage of 1,041 chondrichthyan fishes (sharks, rays, and chimaeras).
Abstract: The rapid expansion of human activities threatens ocean-wide biodiversity. Numerous marine animal populations have declined, yet it remains unclear whether these trends are symptomatic of a chronic accumulation of global marine extinction risk. We present the first systematic analysis of threat for a globally distributed lineage of 1,041 chondrichthyan fishes—sharks, rays, and chimaeras. We estimate that one-quarter are threatened according to IUCN Red List criteria due to overfishing (targeted and incidental). Large-bodied, shallow-water species are at greatest risk and five out of the seven most threatened families are rays. Overall chondrichthyan extinction risk is substantially higher than for most other vertebrates, and only one-third of species are considered safe. Population depletion has occurred throughout the world's ice-free waters, but is particularly prevalent in the Indo-Pacific Biodiversity Triangle and Mediterranean Sea. Improved management of fisheries and trade is urgently needed to avoid extinctions and promote population recovery.
1,467 citations
Authors
Showing all 783 results
Name | H-index | Papers | Citations |
---|---|---|---|
Didier Raoult | 173 | 3267 | 153016 |
Douglas E. Soltis | 127 | 612 | 67161 |
Pamela S. Soltis | 120 | 543 | 61080 |
John Terborgh | 91 | 226 | 35391 |
Jeff J. Doyle | 76 | 216 | 30426 |
S. Blair Hedges | 63 | 200 | 22015 |
Neil D. Opdyke | 56 | 151 | 8445 |
Bruce J. MacFadden | 55 | 183 | 10786 |
Mark Brenner | 54 | 170 | 10891 |
Carlos Jaramillo | 54 | 314 | 12814 |
W. John Kress | 54 | 167 | 16071 |
David L. Dilcher | 52 | 202 | 10497 |
Edward L. Braun | 51 | 144 | 13174 |
Gregor M. Cailliet | 49 | 150 | 7314 |
Kevin P. Johnson | 49 | 194 | 6900 |