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Showing papers by "Florida State University published in 2012"


Journal ArticleDOI
TL;DR: The new version provides convergence diagnostics and allows multiple analyses to be run in parallel with convergence progress monitored on the fly, and provides more output options than previously, including samples of ancestral states, site rates, site dN/dS rations, branch rates, and node dates.
Abstract: Since its introduction in 2001, MrBayes has grown in popularity as a software package for Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC) methods. With this note, we announce the release of version 3.2, a major upgrade to the latest official release presented in 2003. The new version provides convergence diagnostics and allows multiple analyses to be run in parallel with convergence progress monitored on the fly. The introduction of new proposals and automatic optimization of tuning parameters has improved convergence for many problems. The new version also sports significantly faster likelihood calculations through streaming single-instruction-multiple-data extensions (SSE) and support of the BEAGLE library, allowing likelihood calculations to be delegated to graphics processing units (GPUs) on compatible hardware. Speedup factors range from around 2 with SSE code to more than 50 with BEAGLE for codon problems. Checkpointing across all models allows long runs to be completed even when an analysis is prematurely terminated. New models include relaxed clocks, dating, model averaging across time-reversible substitution models, and support for hard, negative, and partial (backbone) tree constraints. Inference of species trees from gene trees is supported by full incorporation of the Bayesian estimation of species trees (BEST) algorithms. Marginal model likelihoods for Bayes factor tests can be estimated accurately across the entire model space using the stepping stone method. The new version provides more output options than previously, including samples of ancestral states, site rates, site d(N)/d(S) rations, branch rates, and node dates. A wide range of statistics on tree parameters can also be output for visualization in FigTree and compatible software.

18,718 citations


Journal ArticleDOI
TL;DR: In this paper, results from searches for the standard model Higgs boson in proton-proton collisions at 7 and 8 TeV in the CMS experiment at the LHC, using data samples corresponding to integrated luminosities of up to 5.8 standard deviations.

8,857 citations


Journal ArticleDOI
Kaoru Hagiwara, Ken Ichi Hikasa1, Koji Nakamura, Masaharu Tanabashi1, M. Aguilar-Benitez, Claude Amsler2, R. M. Barnett3, P. R. Burchat4, C. D. Carone5, C. Caso6, G. Conforto7, Olav Dahl3, Michael Doser8, Semen Eidelman9, Jonathan L. Feng10, L. K. Gibbons11, M. C. Goodman12, Christoph Grab13, D. E. Groom3, Atul Gurtu8, Atul Gurtu14, K. G. Hayes15, J.J. Hernández-Rey16, K. Honscheid17, Christopher Kolda18, Michelangelo L. Mangano8, D. M. Manley19, Aneesh V. Manohar20, John March-Russell8, Alberto Masoni, Ramon Miquel3, Klaus Mönig, Hitoshi Murayama21, Hitoshi Murayama3, S. Sánchez Navas13, Keith A. Olive22, Luc Pape8, C. Patrignani6, A. Piepke23, Matts Roos24, John Terning25, Nils A. Tornqvist24, T. G. Trippe3, Petr Vogel26, C. G. Wohl3, Ron L. Workman27, W-M. Yao3, B. Armstrong3, P. S. Gee3, K. S. Lugovsky, S. B. Lugovsky, V. S. Lugovsky, Marina Artuso28, D. Asner29, K. S. Babu30, E. L. Barberio8, Marco Battaglia8, H. Bichsel31, O. Biebel32, P. Bloch8, Robert N. Cahn3, Ariella Cattai8, R.S. Chivukula33, R. Cousins34, G. A. Cowan35, Thibault Damour36, K. Desler, R. J. Donahue3, D. A. Edwards, Victor Daniel Elvira37, Jens Erler38, V. V. Ezhela, A Fassò8, W. Fetscher13, Brian D. Fields39, B. Foster40, Daniel Froidevaux8, Masataka Fukugita41, Thomas K. Gaisser42, L. A. Garren37, H J Gerber13, Frederick J. Gilman43, Howard E. Haber44, C. A. Hagmann29, J.L. Hewett4, Ian Hinchliffe3, Craig J. Hogan31, G. Höhler45, P. Igo-Kemenes46, John David Jackson3, Kurtis F Johnson47, D. Karlen48, B. Kayser37, S. R. Klein3, Konrad Kleinknecht49, I.G. Knowles50, P. Kreitz4, Yu V. Kuyanov, R. Landua8, Paul Langacker38, L. S. Littenberg51, Alan D. Martin52, Tatsuya Nakada53, Tatsuya Nakada8, Meenakshi Narain33, Paolo Nason, John A. Peacock54, H. R. Quinn55, Stuart Raby17, Georg G. Raffelt32, E. A. Razuvaev, B. Renk49, L. Rolandi8, Michael T Ronan3, L.J. Rosenberg54, C.T. Sachrajda55, A. I. Sanda56, Subir Sarkar57, Michael Schmitt58, O. Schneider53, Douglas Scott59, W. G. Seligman60, M. H. Shaevitz60, Torbjörn Sjöstrand61, George F. Smoot3, Stefan M Spanier4, H. Spieler3, N. J. C. Spooner62, Mark Srednicki63, Achim Stahl, Todor Stanev42, M. Suzuki3, N. P. Tkachenko, German Valencia64, K. van Bibber29, Manuella Vincter65, D. R. Ward66, Bryan R. Webber66, M R Whalley52, Lincoln Wolfenstein43, J. Womersley37, C. L. Woody51, Oleg Zenin 
Tohoku University1, University of Zurich2, Lawrence Berkeley National Laboratory3, Stanford University4, College of William & Mary5, University of Genoa6, University of Urbino7, CERN8, Budker Institute of Nuclear Physics9, University of California, Irvine10, Cornell University11, Argonne National Laboratory12, ETH Zurich13, Tata Institute of Fundamental Research14, Hillsdale College15, Spanish National Research Council16, Ohio State University17, University of Notre Dame18, Kent State University19, University of California, San Diego20, University of California, Berkeley21, University of Minnesota22, University of Alabama23, University of Helsinki24, Los Alamos National Laboratory25, California Institute of Technology26, George Washington University27, Syracuse University28, Lawrence Livermore National Laboratory29, Oklahoma State University–Stillwater30, University of Washington31, Max Planck Society32, Boston University33, University of California, Los Angeles34, Royal Holloway, University of London35, Université Paris-Saclay36, Fermilab37, University of Pennsylvania38, University of Illinois at Urbana–Champaign39, University of Bristol40, University of Tokyo41, University of Delaware42, Carnegie Mellon University43, University of California, Santa Cruz44, Karlsruhe Institute of Technology45, Heidelberg University46, Florida State University47, Carleton University48, University of Mainz49, University of Edinburgh50, Brookhaven National Laboratory51, Durham University52, University of Lausanne53, Massachusetts Institute of Technology54, University of Southampton55, Nagoya University56, University of Oxford57, Northwestern University58, University of British Columbia59, Columbia University60, Lund University61, University of Sheffield62, University of California, Santa Barbara63, Iowa State University64, University of Alberta65, University of Cambridge66
TL;DR: The Particle Data Group's biennial review as mentioned in this paper summarizes much of particle physics, using data from previous editions, plus 2658 new measurements from 644 papers, and lists, evaluates, and average measured properties of gauge bosons, leptons, quarks, mesons, and baryons.
Abstract: This biennial Review summarizes much of particle physics. Using data from previous editions, plus 2658 new measurements from 644 papers, we list, evaluate, and average measured properties of gauge bosons, leptons, quarks, mesons, and baryons. We summarize searches for hypothetical particles such as Higgs bosons, heavy neutrinos, and supersymmetric particles. All the particle properties and search limits are listed in Summary Tables. We also give numerous tables, figures, formulae, and reviews of topics such as the Standard Model, particle detectors, probability, and statistics. Among the 112 reviews are many that are new or heavily revised including those on Heavy-Quark and Soft-Collinear Effective Theory, Neutrino Cross Section Measurements, Monte Carlo Event Generators, Lattice QCD, Heavy Quarkonium Spectroscopy, Top Quark, Dark Matter, V-cb & V-ub, Quantum Chromodynamics, High-Energy Collider Parameters, Astrophysical Constants, Cosmological Parameters, and Dark Matter. A booklet is available containing the Summary Tables and abbreviated versions of some of the other sections of this full Review. All tables, listings, and reviews (and errata) are also available on the Particle Data Group website: http://pdg.lbl.gov.

4,465 citations


Journal ArticleDOI
TL;DR: In this article, a comprehensive empirical examination of LMX antecedents and consequences has been conducted, which included 247 studies, containing 290 samples, and 21 antecedent and 16 consequences of leader-member exchange quality.

1,243 citations


Journal ArticleDOI
19 Oct 2012-Science
TL;DR: The transcriptional architecture of the circadian transcriptional regulatory loop on a genome scale in mouse liver is interrogated and a stereotyped, time-dependent pattern of transcription factor binding, RNA polymerase II recruitment, RNA expression, and chromatin states is found.
Abstract: The mammalian circadian clock involves a transcriptional feed back loop in which CLOCK and BMAL1 activate the Period and Cryptochrome genes, which then feedback and repress their own transcription. We have interrogated the transcriptional architecture of the circadian transcriptional regulatory loop on a genome scale in mouse liver and find a stereotyped, time-dependent pattern of transcription factor binding, RNA polymerase II (RNAPII) recruitment, RNA expression, and chromatin states. We find that the circadian transcriptional cycle of the clock consists of three distinct phases: a poised state, a coordinated de novo transcriptional activation state, and a repressed state. Only 22% of messenger RNA (mRNA) cycling genes are driven by de novo transcription, suggesting that both transcriptional and posttranscriptional mechanisms underlie the mammalian circadian clock. We also find that circadian modulation of RNAPII recruitment and chromatin remodeling occurs on a genome-wide scale far greater than that seen previously by gene expression profiling.

1,184 citations


Journal ArticleDOI
TL;DR: This article conducted a meta-analysis of 102 studies investigating the behavioral effects of self-control using the Self-Control Scale, the Barratt Impulsiveness Scale, and the Low Self Control Scale.
Abstract: Given assertions of the theoretical, empirical, and practical importance of self-control, this meta-analytic study sought to review evidence concerning the relationship between dispositional self-control and behavior. The authors provide a brief overview over prominent theories of self-control, identifying implicit assumptions surrounding the effects of self-control that warrant empirical testing. They report the results of a meta-analysis of 102 studies (total N = 32,648) investigating the behavioral effects of self-control using the Self-Control Scale, the Barratt Impulsiveness Scale, and the Low Self-Control Scale. A small to medium positive effect of self-control on behavior was found for the three scales. Only the Self-Control Scale allowed for a fine-grained analysis of conceptual moderators of the self-control behavior relation. Specifically, self-control (measured by the Self-Control Scale) related similarly to the performance of desired behaviors and the inhibition of undesired behaviors, but its effects varied dramatically across life domains (e.g., achievement, adjustment). In addition, the associations between self-control and behavior were significantly stronger for automatic (as compared to controlled) behavior and for imagined (as compared to actual) behavior.

1,137 citations


Journal ArticleDOI
TL;DR: In this article, the authors proposed an integrated model that examines the impact of three elements of foodservice quality dimensions (physical environment, food, and service) on restaurant image, customer perceived value, customer satisfaction, and behavioral intentions.
Abstract: Purpose – The purpose of this study is to propose an integrated model that examines the impact of three elements of foodservice quality dimensions (physical environment, food, and service) on restaurant image, customer perceived value, customer satisfaction, and behavioral intentions.Design/methodology/approach – Data were collected from customers at an authentic upscale Chinese restaurant located in a Southeastern state in the USA via a self‐administered questionnaire. Anderson and Gerbing's two‐step approach was used to assess the measurement and structural models.Findings – Structural equation modeling shows that the quality of the physical environment, food, and service were significant determinants of restaurant image. Also, the quality of the physical environment and food were significant predictors of customer perceived value. The restaurant image was also found to be a significant antecedent of customer perceived value. In addition, the results reinforced that customer perceived value is indeed a ...

991 citations


Journal ArticleDOI
TL;DR: Both constructs demonstrated convergent associations with related interpersonal constructs-including loneliness and social support for belongingness and social worth and death ideation for burdensomeness--as well as prospective associations with suicidal ideation.
Abstract: The present study examined the psychometric properties and construct validity of scores derived from the Interpersonal Needs Questionnaire (INQ) using latent variable modeling with 5 independent samples varying in age and level of psychopathology. The INQ was derived from the interpersonal theory of suicide and was developed to measure thwarted belongingness and perceived burdensomeness-both proximal causes of desire for suicide. Results support that thwarted belongingness and perceived burdensomeness are distinct but related constructs and that they can be reliably measured. Further, multiple-group analyses were consistent with invariance for young versus older adults and nonclinical versus clinical populations, thereby supporting the relevance of these constructs to diverse populations. Finally, both constructs demonstrated convergent associations with related interpersonal constructs-including loneliness and social support for belongingness and social worth and death ideation for burdensomeness--as well as prospective associations with suicidal ideation.

954 citations


Journal ArticleDOI
TL;DR: A review of recent studies emphasizes the importance of wind-driven upwelling in the Southern Ocean for global ocean circulation as discussed by the authors, which plays a central role in the climate and its variability.
Abstract: The meridional overturning circulation of the ocean plays a central role in the climate and its variability. This Review of recent studies emphasizes the importance of wind-driven upwelling in the Southern Ocean for global ocean circulation.

799 citations


Journal ArticleDOI
29 Mar 2012
TL;DR: In this article, the authors reported results from searches for the standard model Higgs boson in proton-proton collisions at square root(s) = 7 TeV in five decay modes: gamma pair, b-quark pair, tau lepton pair, W pair, and Z pair.
Abstract: Combined results are reported from searches for the standard model Higgs boson in proton-proton collisions at sqrt(s)=7 TeV in five Higgs boson decay modes: gamma pair, b-quark pair, tau lepton pair, W pair, and Z pair. The explored Higgs boson mass range is 110-600 GeV. The analysed data correspond to an integrated luminosity of 4.6-4.8 inverse femtobarns. The expected excluded mass range in the absence of the standard model Higgs boson is 118-543 GeV at 95% CL. The observed results exclude the standard model Higgs boson in the mass range 127-600 GeV at 95% CL, and in the mass range 129-525 GeV at 99% CL. An excess of events above the expected standard model background is observed at the low end of the explored mass range making the observed limits weaker than expected in the absence of a signal. The largest excess, with a local significance of 3.1 sigma, is observed for a Higgs boson mass hypothesis of 124 GeV. The global significance of observing an excess with a local significance greater than 3.1 sigma anywhere in the search range 110-600 (110-145) GeV is estimated to be 1.5 sigma (2.1 sigma). More data are required to ascertain the origin of this excess.

786 citations


Journal ArticleDOI
TL;DR: Replacement of CFP and YFP with these two proteins in reporters of kinase activity, small GTPase activity and transmembrane voltage significantly improves photostability, FRET dynamic range and emission ratio changes and enhances detection of transient biochemical events.
Abstract: A variety of genetically encoded reporters use changes in fluorescence (or Forster) resonance energy transfer (FRET) to report on biochemical processes in living cells. The standard genetically encoded FRET pair consists of CFPs and YFPs, but many CFP-YFP reporters suffer from low FRET dynamic range, phototoxicity from the CFP excitation light and complex photokinetic events such as reversible photobleaching and photoconversion. We engineered two fluorescent proteins, Clover and mRuby2, which are the brightest green and red fluorescent proteins to date and have the highest Forster radius of any ratiometric FRET pair yet described. Replacement of CFP and YFP with these two proteins in reporters of kinase activity, small GTPase activity and transmembrane voltage significantly improves photostability, FRET dynamic range and emission ratio changes. These improvements enhance detection of transient biochemical events such as neuronal action-potential firing and RhoA activation in growth cones.

Journal ArticleDOI
TL;DR: A new, cost-efficient, and rapid approach to obtaining data from hundreds of loci for potentially hundreds of individuals for deep and shallow phylogenetic studies, found that hybrid enrichment using conserved probes (anchored enrichment) can recover a large number of unlinked loci that are useful at a diversity of phylogenetic timescales.
Abstract: The field of phylogenetics is on the cusp of a major revolution, enabled by new methods of data collection that leverage both genomic resources and recent advances in DNA sequencing. Previous phylogenetic work has required labor-intensive marker development coupled with single-locus polymerase chain reaction and DNA sequencing on clade-by-clade and locus-by-locus basis. Here, we present a new, cost-efficient, and rapid approach to obtaining data from hundreds of loci for potentially hundreds of individuals for deep and shallow phylogenetic studies. Specifically, we designed probes for target enrichment of >500 loci in highly conserved anchor regions of vertebrate genomes (flanked by less conserved regions) from five model species and tested enrichment efficiency in nonmodel species up to 508 million years divergent from the nearest model. We found that hybrid enrichment using conserved probes (anchored enrichment) can recover a large number of unlinked loci that are useful at a diversity of phylogenetic timescales. This new approach has the potential not only to expedite resolution of deep-scale portions of the Tree of Life but also to greatly accelerate resolution of the large number of shallow clades that remain unresolved. The combination of low cost (~1% of the cost of traditional Sanger sequencing and ~3.5% of the cost of high-throughput amplicon sequencing for projects on the scale of 500 loci × 100 individuals) and rapid data collection (~2 weeks of laboratory time) are expected to make this approach tractable even for researchers working on systems with limited or nonexistent genomic resources.

Journal ArticleDOI
TL;DR: A large-scale experience sampling study based on a conceptual framework integrating desire strength, conflict, resistance (use of self-control), and behavior enactment offers a novel and detailed perspective on the nature of everyday desires and associated self-regulatory successes and failures.
Abstract: How often and how strongly do people experience desires, to what extent do their desires conflict with other goals, and how often and successfully do people exercise self-control to resist their desires? To investigate desire and attempts to control desire in everyday life, we conducted a large-scale experience sampling study based on a conceptual framework integrating desire strength, conflict, resistance (use of self-control), and behavior enactment. A sample of 205 adults wore beepers for a week. They furnished 7,827 reports of desire episodes and completed personality measures of behavioral inhibition system/behavior activation system (BIS/BAS) sensitivity, trait self-control, perfectionism, and narcissistic entitlement. Results suggest that desires are frequent, variable in intensity, and largely unproblematic. Those urges that do conflict with other goals tend to elicit resistance, with uneven success. Desire strength, conflict, resistance, and self-regulatory success were moderated in multiple ways by personality variables as well as by situational and interpersonal factors such as alcohol consumption, the mere presence of others, and the presence of others who already had enacted the desire in question. Whereas personality generally had a stronger impact on the dimensions of desire that emerged early in its course (desire strength and conflict), situational factors showed relatively more influence on components later in the process (resistance and behavior enactment). In total, these findings offer a novel and detailed perspective on the nature of everyday desires and associated self-regulatory successes and failures.

Journal ArticleDOI
TL;DR: In this article, the performance of muon reconstruction, identification, and triggering in CMS has been studied using 40 inverse picobarns of data collected in pp collisions at the LHC in 2010.
Abstract: The performance of muon reconstruction, identification, and triggering in CMS has been studied using 40 inverse picobarns of data collected in pp collisions at sqrt(s) = 7 TeV at the LHC in 2010. A few benchmark sets of selection criteria covering a wide range of physics analysis needs have been examined. For all considered selections, the efficiency to reconstruct and identify a muon with a transverse momentum pT larger than a few GeV is above 95% over the whole region of pseudorapidity covered by the CMS muon system, abs(eta)<2.4, while the probability to misidentify a hadron as a muon is well below 1%. The efficiency to trigger on single muons with pT above a few GeV is higher than 90% over the full eta range, and typically substantially better. The overall momentum scale is measured to a precision of 0.2% with muons from Z decays. The transverse momentum resolution varies from 1% to 6% depending on pseudorapidity for muons with pT below 100 GeV and, using cosmic rays, it is shown to be better than 10% in the central region up to pT = 1 TeV. Observed distributions of all quantities are well reproduced by the Monte Carlo simulation.

Journal ArticleDOI
TL;DR: BEAGLE, an application programming interface (API) and library for high-performance statistical phylogenetic inference, is presented, which provides a uniform interface for performing phylogenetic likelihood calculations on a variety of compute hardware platforms.
Abstract: Phylogenetic inference is fundamental to our understanding of most aspects of the origin and evolution of life, and in recent years, there has been a concentration of interest in statistical approaches such as Bayesian inference and maximum likelihood estimation. Yet, for large data sets and realistic or interesting models of evolution, these approaches remain computationally demanding. High-throughput sequencing can yield data for thousands of taxa, but scaling to such problems using serial computing often necessitates the use of nonstatistical or approximate approaches. The recent emergence of graphics processing units (GPUs) provides an opportunity to leverage their excellent floating-point computational performance to accelerate statistical phylogenetic inference. A specialized library for phylogenetic calculation would allow existing software packages to make more effective use of available computer hardware, including GPUs. Adoption of a common library would also make it easier for other emerging computing architectures, such as field programmable gate arrays, to be used in the future. We present BEAGLE, an application programming interface (API) and library for high-performance statistical phylogenetic inference. The API provides a uniform interface for performing phylogenetic likelihood calculations on a variety of compute hardware platforms. The library includes a set of efficient implementations and can currently exploit hardware including GPUs using NVIDIA CUDA, central processing units (CPUs) with Streaming SIMD Extensions and related processor supplementary instruction sets, and multicore CPUs via OpenMP. To demonstrate the advantages of a common API, we have incorporated the library into several popular phylogenetic software packages. The BEAGLE library is free open source software licensed under the Lesser GPL and available from http://beagle-lib.googlecode.com. An example client program is available as public domain software.

Posted Content
01 Jan 2012
TL;DR: In this article, a large survey revealed multiple differing predictors of happiness (controlling for meaning) and meaningfulness, and concluded that satisfying one's needs and wants increased happiness but was largely irrelevant to meaningfulness.
Abstract: Being happy and finding life meaningful overlap, but there are important differences. A large survey revealed multiple differing predictors of happiness (controlling for meaning) and meaningfulness (controlling for happiness). Satisfying one's needs and wants increased happiness but was largely irrelevant to meaningfulness. Happiness was largely present-oriented, whereas meaningfulness involves integrating past, present, and future. For example, thinking about future and past was associated with high meaningfulness but low happiness. Happiness was linked to being a taker rather than a giver, whereas meaningfulness went with being a giver rather than a taker. Higher levels of worry, stress, and anxiety were linked to higher meaningfulness but lower happiness. Concerns with personal identity and expressing the self-contributed to meaning but not happiness. We offer brief composite sketches of the unhappy but meaningful life and of the happy but meaningless life.

Journal ArticleDOI
TL;DR: The draft genome included genes for chemotaxis, motility and nutrient acquisition strategies that were also identified in the metagenomes and metatranscriptomes, which point towards a rapid response of members of the Oceanospirillales to aliphatic hydrocarbons in the deep sea.
Abstract: The Deepwater Horizon oil spill in the Gulf of Mexico resulted in a deep-sea hydrocarbon plume that caused a shift in the indigenous microbial community composition with unknown ecological consequences. Early in the spill history, a bloom of uncultured, thus uncharacterized, members of the Oceanospirillales was previously detected, but their role in oil disposition was unknown. Here our aim was to determine the functional role of the Oceanospirillales and other active members of the indigenous microbial community using deep sequencing of community DNA and RNA, as well as single-cell genomics. Shotgun metagenomic and metatranscriptomic sequencing revealed that genes for motility, chemotaxis and aliphatic hydrocarbon degradation were significantly enriched and expressed in the hydrocarbon plume samples compared with uncontaminated seawater collected from plume depth. In contrast, although genes coding for degradation of more recalcitrant compounds, such as benzene, toluene, ethylbenzene, total xylenes and polycyclic aromatic hydrocarbons, were identified in the metagenomes, they were expressed at low levels, or not at all based on analysis of the metatranscriptomes. Isolation and sequencing of two Oceanospirillales single cells revealed that both cells possessed genes coding for n-alkane and cycloalkane degradation. Specifically, the near-complete pathway for cyclohexane oxidation in the Oceanospirillales single cells was elucidated and supported by both metagenome and metatranscriptome data. The draft genome also included genes for chemotaxis, motility and nutrient acquisition strategies that were also identified in the metagenomes and metatranscriptomes. These data point towards a rapid response of members of the Oceanospirillales to aliphatic hydrocarbons in the deep sea.

Journal ArticleDOI
Daniele S. M. Alves1, Nima Arkani-Hamed, S. Arora2, Yang Bai1, Matthew Baumgart3, Joshua Berger4, Matthew R. Buckley5, Bart Butler1, Spencer Chang6, Spencer Chang7, Hsin-Chia Cheng7, Clifford Cheung8, R. Sekhar Chivukula9, Won Sang Cho10, R. Cotta1, Mariarosaria D'Alfonso11, Sonia El Hedri1, Rouven Essig12, Jared A. Evans7, Liam Fitzpatrick13, Patrick J. Fox5, Roberto Franceschini14, Ayres Freitas15, James S. Gainer16, James S. Gainer17, Yuri Gershtein2, R. N.C. Gray2, Thomas Gregoire18, Ben Gripaios19, J.F. Gunion7, Tao Han20, Andy Haas1, P. Hansson1, JoAnne L. Hewett1, Dmitry Hits2, Jay Hubisz21, Eder Izaguirre1, Jared Kaplan1, Emanuel Katz13, Can Kilic2, Hyung Do Kim22, Ryuichiro Kitano23, Sue Ann Koay11, Pyungwon Ko24, David Krohn25, Eric Kuflik26, Ian M. Lewis20, Mariangela Lisanti27, Tao Liu11, Zhen Liu20, Ran Lu26, Markus A. Luty7, Patrick Meade12, David E. Morrissey28, Stephen Mrenna5, Mihoko M. Nojiri, Takemichi Okui29, Sanjay Padhi30, Michele Papucci31, Michael Park2, Myeonghun Park32, Maxim Perelstein4, Michael E. Peskin1, Daniel J. Phalen7, Keith Rehermann33, Vikram Rentala34, Vikram Rentala35, Tuhin S. Roy36, Joshua T. Ruderman27, Veronica Sanz37, Martin Schmaltz13, S. Schnetzer2, Philip Schuster38, Pedro Schwaller39, Pedro Schwaller16, Pedro Schwaller40, Matthew D. Schwartz25, Ariel Schwartzman1, Jing Shao21, J. Shelton41, David Shih2, Jing Shu10, Daniel Silverstein1, Elizabeth H. Simmons9, Sunil Somalwar2, Michael Spannowsky6, Christian Spethmann13, Matthew J. Strassler2, Shufang Su34, Shufang Su35, Tim M. P. Tait35, Brooks Thomas42, Scott Thomas2, Natalia Toro38, Tomer Volansky8, Jay G. Wacker1, Wolfgang Waltenberger43, Itay Yavin44, Felix Yu35, Yue Zhao2, Kathryn M. Zurek26 
TL;DR: A collection of simplified models relevant to the design of new-physics searches at the Large Hadron Collider (LHC) and the characterization of their results is presented in this paper.
Abstract: This document proposes a collection of simplified models relevant to the design of new-physics searches at the Large Hadron Collider (LHC) and the characterization of their results. Both ATLAS and CMS have already presented some results in terms of simplified models, and we encourage them to continue and expand this effort, which supplements both signature-based results and benchmark model interpretations. A simplified model is defined by an effective Lagrangian describing the interactions of a small number of new particles. Simplified models can equally well be described by a small number of masses and cross-sections. These parameters are directly related to collider physics observables, making simplified models a particularly effective framework for evaluating searches and a useful starting point for characterizing positive signals of new physics. This document serves as an official summary of the results from the 'Topologies for Early LHC Searches' workshop, held at SLAC in September of 2010, the purpose of which was to develop a set of representative models that can be used to cover all relevant phase space in experimental searches. Particular emphasis is placed on searches relevant for the first similar to 50-500 pb(-1) of data and those motivated by supersymmetric models. This note largely summarizes material posted at http://lhcnewphysics.org/, which includes simplified model definitions, Monte Carlo material, and supporting contacts within the theory community. We also comment on future developments that may be useful as more data is gathered and analyzed by the experiments.

Journal ArticleDOI
TL;DR: In this paper, the authors reviewed the drivers of porewater and groundwater advection in permeable shelf sediments in an attempt to bridge gaps among different disciplines studying similar problems, and identified the following driving forces: (1) terrestrial hydraulic gradients, (2) seasonal changes in the aquifer level on land moving the location of the subterranean estuary, (3) wave setup and tidal pumping, (4) water level differences across permeable barriers, (5) flow-and topography-induced pressure gradient, (6) wave pumping; ripple and other
Abstract: Advective flows rapidly transport water, solutes, and particles into and out of permeable sand beds and significantly affects the biogeochemistry of coastal environments. In this paper, we reviewed the drivers of porewater and groundwater advection in permeable shelf sediments in an attempt to bridge gaps among different disciplines studying similar problems. We identified the following driving forces: (1) terrestrial hydraulic gradients, (2) seasonal changes in the aquifer level on land moving the location of the subterranean estuary, (3) wave setup and tidal pumping, (4) water level differences across permeable barriers, (5) flow- and topography-induced pressure gradients, (6) wave pumping; (7) ripple and other bed form migration, (8) fluid shear, (9) density-driven convection, (10) bioirrigation and bioturbation, (11) gas bubble upwelling, and (12) sediment compaction. While these drivers occur over spatial scales ranging from mm to km, and temporal scales ranging from seconds to years, their ultimate biogeochemical implications are very similar (i.e., they are often a source of new or recycled nutrients to seawater and transform organic carbon into inorganic carbon). Drivers 2–12 result in no net water input into the ocean. Taking all these mechanisms into account, we conservatively estimate that a volume equivalent to that of the entire ocean is filtered by permeable sediments at time scales of about 3000 years. Quantifying the relative contribution of these drivers is essential to understand the contribution of sediments to the global cycles of matter.

Journal ArticleDOI
TL;DR: This paper showed that the failure to make additional predictions about how the effect of Z varies with the value of X, and to evaluate them with a second marginal effect plot, means that scholars often ignore evidence that can be extremely valuable for testing their theory.
Abstract: It is well established that all interactions are symmetric: when the effect of X on Y is conditional on the value of Z, the effect of Z must be conditional on the value of X. Yet the typical practice when testing an interactive theory is to (1) view one variable, Z, as the conditioning variable, (2) offer a hypothesis about how the marginal effect of the other variable, X, is conditional on the value of Z, and (3) construct a marginal effect plot for X to test the theory. We show that the failure to make additional predictions about how the effect of Z varies with the value of X, and to evaluate them with a second marginal effect plot, means that scholars often ignore evidence that can be extremely valuable for testing their theory. As a result, they either understate or, more worryingly, overstate the support for their theories.

Journal ArticleDOI
TL;DR: The proposed coordinated control of distributed energy storage system with traditional voltage regulators including the on-load tap changer transformers and step voltage regulators to solve the voltage rise problem caused by the high photovoltaic penetration in the low-voltage distribution network.
Abstract: This paper proposes a coordinated control of distributed energy storage system (ESS) with traditional voltage regulators including the on-load tap changer transformers (OLTC) and step voltage regulators (SVR) to solve the voltage rise problem caused by the high photovoltaic (PV) penetration in the low-voltage distribution network. The main objective of this coordinated control is to relieve the tap changer transformer operation stress, shave the distribution network peak load and decrease the transmission and distribution resistive power losses under high solar power penetration. The proposed control method limits the energy storage depth of discharge in order to meet a more than ten-year cycle life. A benchmark distribution network model was developed in the Real Time Digital Simulator (RTDS) and the simulation results from the studied cases verified the proposed coordinated control strategy. The experimental implementation of proposed control algorithms were developed based on a power hardware-in-the-loop (PHIL) test bed with a 22 kWh ESS, a smart meter, Labview controller, and RTDS. The experimental results were consistent with those obtained from simulation study.

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TL;DR: The transverse momentum spectra of charged particles have been measured in pp and PbPb collisions at 2.76 TeV by the CMS experiment at the LHC as mentioned in this paper.
Abstract: The transverse momentum spectra of charged particles have been measured in pp and PbPb collisions at sqrt(sNN) = 2.76 TeV by the CMS experiment at the LHC. In the transverse momentum range pt = 5-10 GeV/c, the charged particle yield in the most central PbPb collisions is suppressed by up to a factor of 5 compared to the pp yield scaled by the number of incoherent nucleon-nucleon collisions. At higher pt, this suppression is significantly reduced, approaching roughly a factor of 2 for particles with pt in the range pt=40-100 GeV/c.

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John A. Stamatoyannopoulos1, Michael Snyder2, Ross C. Hardison3, Bing Ren4, Thomas R. Gingeras5, David M. Gilbert6, Mark Groudine7, M. A. Bender7, Rajinder Kaul1, Theresa K. Canfield1, Erica Giste1, Audra K. Johnson1, Mia Zhang7, Gayathri Balasundaram7, Rachel Byron7, Vaughan Roach1, Peter J. Sabo1, Richard Sandstrom1, A Sandra Stehling1, Robert E. Thurman1, Sherman M. Weissman8, Philip Cayting8, Manoj Hariharan2, Jin Lian8, Yong Cheng2, Stephen G. Landt2, Zhihai Ma2, Barbara J. Wold9, Job Dekker10, Gregory E. Crawford11, Cheryl A. Keller3, Weisheng Wu3, Christopher T. Morrissey3, Swathi Ashok Kumar3, Tejaswini Mishra3, Deepti Jain3, Marta Byrska-Bishop3, Daniel Blankenberg3, Bryan R. Lajoie2, Gaurav Jain10, Amartya Sanyal10, Kaun-Bei Chen11, Olgert Denas11, James Taylor12, Gerd A. Blobel13, Mitchell J. Weiss13, Max Pimkin13, Wulan Deng13, Georgi K. Marinov9, Brian A. Williams9, Katherine I. Fisher-Aylor9, Gilberto DeSalvo9, Anthony Kiralusha9, Diane Trout9, Henry Amrhein9, Ali Mortazavi14, Lee Edsall4, David McCleary4, Samantha Kuan4, Yin Shen4, Feng Yue4, Zhen Ye4, Carrie A. Davis5, Chris Zaleski5, Sonali Jha5, Chenghai Xue5, Alexander Dobin5, Wei Lin5, Meagan Fastuca5, Huaien Wang5, Roderic Guigó, Sarah Djebali, Julien Lagarde, Tyrone Ryba6, Takayo Sasaki6, Venkat S. Malladi15, Melissa S. Cline15, Vanessa M. Kirkup15, Katrina Learned15, Kate R. Rosenbloom15, W. James Kent15, Elise A. Feingold16, Peter J. Good16, Michael J. Pazin16, Rebecca F. Lowdon16, Leslie B Adams16 
TL;DR: The Mouse E NCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome to enable a broad range of mouse genomics efforts.
Abstract: To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome

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TL;DR: A metabolic load:capacity model of SO given by the ratio between fat mass and fat free mass is proposed, and how this could be operationalised is discussed, and the concept of regional fat distribution could be incorporated into the model and tested in future studies.

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17 Feb 2012-Science
TL;DR: A 68-million-year record of lithium isotopes in seawater reconstructed from planktonic foraminifera reveals a stepwise change in the Li isotopic ratio, suggesting that several intense episodes of tectonic uplift increased continental weathering rates and delivery of sediments to the oceans.
Abstract: Weathering of uplifted continental rocks consumes carbon dioxide and transports cations to the oceans, thereby playing a critical role in controlling both seawater chemistry and climate. However, there are few archives of seawater chemical change that reveal shifts in global tectonic forces connecting Earth ocean-climate processes. We present a 68-million-year record of lithium isotopes in seawater (δ7LiSW) reconstructed from planktonic foraminifera. From the Paleocene (60 million years ago) to the present, δ7LiSW rose by 9 per mil (‰), requiring large changes in continental weathering and seafloor reverse weathering that are consistent with increased tectonic uplift, more rapid continental denudation, increasingly incongruent continental weathering (lower chemical weathering intensity), and more rapid CO2 drawdown. A 5‰ drop in δ7LiSW across the Cretaceous-Paleogene boundary cannot be produced by an impactor or by Deccan trap volcanism, suggesting large-scale continental denudation.

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TL;DR: Support for a limited-resource model of self-control employing a novel operationalization of cumulative resource depletion is observed: the frequency and recency of engaging in prior self- control negatively predicted people’s success at resisting subsequent desires on the same day.
Abstract: In the present study, we used experience sampling to measure desires and desire regulation in everyday life. Our analysis included data from 205 adults, who furnished a total of 7,827 reports of their desires over the course of a week. Across various desire domains, results revealed substantial differences in desire frequency and strength, the degree of conflict between desires and other goals, and the likelihood of resisting desire and the success of this resistance. Desires for sleep and sex were experienced most intensively, whereas desires for tobacco and alcohol had the lowest average strength, despite the fact that these substances are thought of as addictive. Desires for leisure and sleep conflicted the most with other goals, and desires for media use and work brought about the most self-control failure. In addition, we observed support for a limited-resource model of self-control employing a novel operationalization of cumulative resource depletion: The frequency and recency of engaging in prior self-control negatively predicted people's success at resisting subsequent desires on the same day.

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TL;DR: Marengo et al. as discussed by the authors proposed Marengo, J. A., Centro de Previsao de Tempo e Estudos Climaticos. Instituto Nacional de Pesquisas Espaciais; Brasil
Abstract: Fil: Marengo, J. A.. Centro de Previsao de Tempo e Estudos Climaticos. Instituto Nacional de Pesquisas Espaciais; Brasil

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TL;DR: It is argued that any movement to promote well-being may be most successful to the extent that it examines the conditions under which the same traits and processes may promote versus threaten well- Being, and examines both healthy and unhealthy people.
Abstract: The field of positive psychology rests on the assumption that certain psychological traits and processes are inherently beneficial for well-being. We review evidence that challenges this assumption. First, we review data from 4 independent longitudinal studies of marriage revealing that 4 ostensibly positive processes-forgiveness, optimistic expectations, positive thoughts, and kindness-can either benefit or harm well-being depending on the context in which they operate. Although all 4 processes predicted better relationship well-being among spouses in healthy marriages, they predicted worse relationship well-being in more troubled marriages. Then, we review evidence from other research that reveals that whether ostensibly positive psychological traits and processes benefit or harm well-being depends on the context of various noninterpersonal domains as well. Finally, we conclude by arguing that any movement to promote well-being may be most successful to the extent that it (a) examines the conditions under which the same traits and processes may promote versus threaten well-being, (b) examines both healthy and unhealthy people, (c) examines well-being over substantial periods of time, and (d) avoids labeling psychological traits and processes as positive or negative.

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TL;DR: In this paper, a multi-method approach was utilized consisting of an extensive review of the sustainability literature, a multistage Delphi analysis with a panel of twenty-one purchasing and supply management executives, and interviews with nineteen additional P/SM executives.

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TL;DR: Comparing two classic theories of health behavior—the Health Belief Model and the Theory of Planned Behavior—in their prediction of human papillomavirus (HPV) vaccination revealed considerable overlap between the two theories and highlighted the importance of proximal versus distal predictors of healthbehavior.
Abstract: Although theories of health behavior have guided thousands of studies, relatively few studies have compared these theories against one another. The purpose of the current study was to compare two classic theories of health behavior—the Health Belief Model (HBM) and the Theory of Planned Behavior (TPB)—in their prediction of human papillomavirus (HPV) vaccination. After watching a gain-framed, loss-framed, or control video, women (N = 739) ages 18–26 completed a survey assessing HBM and TPB constructs. HPV vaccine uptake was assessed 10 months later. Although the message framing intervention had no effect on vaccine uptake, support was observed for both the TPB and HBM. Nevertheless, the TPB consistently outperformed the HBM. Key predictors of uptake included subjective norms, self-efficacy, and vaccine cost. Despite the observed advantage of the TPB, findings revealed considerable overlap between the two theories and highlighted the importance of proximal versus distal predictors of health behavior.