Indian Agricultural Statistics Research Institute

About: Indian Agricultural Statistics Research Institute is a facility organization based out in New Delhi, India. It is known for research contribution in the topics: Population & Small area estimation. The organization has 454 authors who have published 870 publications receiving 7987 citations.

On the Construction of Balanced and Partially Balanced Ternary Design

Abstract: A method of constructing balanced and partially balanced ternary designs from balanced and partially balanced incomplete block designs, respectively, and two methods of constructing partially balanced ternary designs from association schemes are obtained. Two new and efficient balanced ternary designs having K < V and R ≦ 20 are obtained by the first method.

Nonlinear Time Series Modeling and Forecasting for Periodic and ARCH Effects

Abstract: Generalized autoregressive conditional heteroscedastic (GARCH) nonlinear time series model may be employed to describe data sets depicting volatility. This model along with its estimation procedure is thoroughly studied. Lagrange multiplier (LM) test for testing presence of Autoregressive conditional heteroscedastic (ARCH) effects is also discussed. As an illustration, modeling and forecasting of monthly rainfall data of Sub-Himalayan West Bengal meteorological subdivision, India is carried out. As the data exhibits presence of seasonal component, Hylleberg, Engle, Granger and Yoo (1990) [HEGY] seasonal unit root test is applied to the data with a view to make the series stationary through “differencing filter”. Subsequently, GARCH model is employed on the residuals obtained after carrying out Periodic autoregressive (PAR) modeling of the seasonal variation. Further, Mixture periodic ARCH (MPARCH) model, which is an extension of GARCH model, is also applied on zero conditional mean residual serie...

Viability of wood decaying fungal mycelium after microwave radiation of bamboo culm

Abstract: The present study was carried out to evaluate the effects of microwave (MW) radiation on viability of wood decaying fungi. The white rot (Trametes versicolor) and brown rot (Rhodonia placenta) fungi were grown on bamboo culm-samples. The mycelium growths were observed in controlled as well as microwave treated samples. The results showed that the viability of fungi decreased according to the applied MW time. This study proved the ability of the microwaves and exposure time MW3 (180 seconds) to kill the fungal colonies and do not allow for the growth of fungal spores, means the rate of growth of fungal colonies is inversely proportional to time of microwave exposure

Genome-wide integrated analysis of miRNA and mRNA expression profiles to identify differentially expressed miR-22-5p and miR-27b-5p in response to classical swine fever vaccine virus.

Abstract: The present study was conducted to identify the differentially expressed miRNAs (DE miRNAs) in the peripheral blood mononuclear cells of crossbred pigs in response to CSF vaccination on 7 and 21 days of post vaccination as compared to unvaccinated control (0 dpv). Simultaneously, set of miRNA was predicted using mRNA seq data at same time point. The proportion of CD4−CD8+ and CD4+CD8+ increased after vaccination, and the mean percentage inhibition was 86.89% at 21 dpv. It was observed that 22 miRNAs were commonly expressed on both the time points. Out of predicted DE miRNAs, it was found that 40 and 35 DE miRNAs were common, obtained from miRNA seq analysis and predicted using mRNA seq data on 7 dpv versus 0 dpv and 21 dpv versus 0 dpv respectively. Two DE miRNAs, ssc-miR-22-5p and ssc-miR-27b-5p, were selected based on their log2 fold change and functions of their target genes in immune process/pathway of viral infections. The validations of DE miRNAs using qRT-PCR were in concordance with miRNA seq analysis. Two set of target genes, CD40 and SWAP70 (target gene of ssc-miR-22-5p) and TLR4 and Lyn (target gene of ssc-miR-27b-5p), were validated and were in concordance with results of RNA seq analysis at a particular time point (except TLR4). The first report of genome-wide identification of differentially expressed miRNA in response to live attenuated vaccine virus of classical swine fever revealed miR-22-5p and miR-27b-5p were differentially expressed at 7 dpv and 21 dpv.

Genomic analysis of polycarpellary rice (Oryza sativa L.) through whole genome resequencing

Abstract: There is a natural floral organ mutant of rice (var. Jugal) where the florets, popularly known as spikelet bear multiple carpels and produce multiple kernels in most of its grain. In our earlier work a detailed study has been done on its morpho-anatomical structure with allelic diversity and expression study of the major genetic loci associated with floral organ development. In present study high throughput whole genome sequencing was done which generated about of 3.7 million base pair genomic data for downstream analysis. The reads were about 101 bases long and mapped to the Oryza sativa var. Nipponbare as reference genome. Genome wide variant analysis detected 1,096,419 variants which included 943,033 SNPs and 153,386 InDels. A total of 24,920 non-synonymous SNPs were identified for 11,529 identified genes. Chromosome-wise distribution of uniquely mapped reads onto reference genome showed that maximum reads were mapped to 1st chromosome and least to 9th chromosome. 10th chromosome showed highest density of variations (about 325.6 per 100 kb genome sequence). Detailed sequence analysis of 23 floral organ developmental genes detected 419 potent variants where DL (Drooping Leaf) and OSH1 (Oryza sativa Homeobox1) genes showed highest number (32) of variants; whereas, MADS21 (Minichromosome Agamous Deficient Serum Factor 21) gene have lowest number (5) of variants. The information generated in this study will enrich the genomics of floral organ development in indica rice and cereal crops in general.