Indonesian Institute of Sciences

About: Indonesian Institute of Sciences is a facility organization based out in Jakarta, Indonesia. It is known for research contribution in the topics: Population & Biology. The organization has 4795 authors who have published 10544 publications receiving 76990 citations. The organization is also known as: Indonesian Institute of Sciences Cibinong, Indonesia.

Effects of high temperature stress during anthesis and grain filling periods on photosynthesis, lipids and grain yield in wheat

Abstract: Short episodes of high temperature (HT) stress during reproductive stages of development cause significant yield losses in wheat (Triticum aestivum L.). Two independent experiments were conducted to quantify the effects of HT during anthesis and grain filling periods on photosynthesis, leaf lipidome, and yield traits in wheat. In experiment I, wheat genotype Seri82 was exposed to optimum temperature (OT; 22/14 °C; day/night) or HT (32/22 °C) for 14 d during anthesis stage. In experiment II, the plants were exposed to OT or HT for 14 d during the grain filling stage. During the HT stress, chlorophyll index, thylakoid membrane damage, stomatal conductance, photosynthetic rate and leaf lipid composition were measured. At maturity, grain yield and its components were quantified. HT stress during anthesis or grain filling stage decreased photosynthetic rate (17 and 25%, respectively) and grain yield plant− 1 (29 and 44%, respectively), and increased thylakoid membrane damage (61 and 68%, respectively) compared to their respective control (OT). HT stress during anthesis or grain filling stage increased the molar percentage of less unsaturated lipid species [36:5- monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG)]. However, at grain filling stage, HT stress decreased the molar percentage of more unsaturated lipid species (36:6- MGDG and DGDG). There was a significant positive relationship between photosynthetic rate and grain yield plant− 1, and a negative relationship between thylakoid membrane damage and photosynthetic rate. The study suggests that maintaining thylakoid membrane stability, and seed-set per cent and individual grain weight under HT stress can improve the photosynthetic rate and grain yield, respectively.

Tepidanaerobacter syntrophicus gen. nov., sp. nov., an anaerobic, moderately thermophilic, syntrophic alcohol- and lactate-degrading bacterium isolated from thermophilic digested sludges.

Abstract: Three anaerobic, moderately thermophilic, syntrophic primary alcohol- and lactate-degrading microbes, designated strains JLT, JE and OL, were isolated from sludges of thermophilic (55 °C) digesters that decomposed either municipal solid wastes or sewage sludge. The strains were strictly anaerobic organisms. All three strains grew at 25–60 °C and pH 5.5–8.5 and optimum growth was observed at 45–50 °C and pH 6.0–7.0. The three organisms grew chemo-organotrophically on a number of carbohydrates in the presence of yeast extract. In co-culture with the hydrogenotrophic methanogen Methanothermobacter thermautotrophicus, all strains could utilize ethanol, glycerol and lactate syntrophically for growth, although these compounds were not metabolized in pure culture without additional external electron acceptors. All strains could reduce thiosulphate. Quinones were not detected. The DNA G+C contents of strains JLT, JE and OL were 38.0, 37.3 and 37.7 mol%, respectively. Major cellular fatty acids of the strains were iso-C15 : 0, C16 : 0 and unsaturated species of C15 : 1. Phylogenetic analyses based on 16S rRNA gene sequences revealed that the strains belong to a deeply branched lineage of the phylum Firmicutes; the most closely related species was Thermovenabulum ferriorganovorum (16S rRNA gene sequence similarity of 88 %). The three strains were phylogenetically very closely related to each other (99–100 % 16S rRNA gene sequence similarity) and were physiologically and chemotaxonomically similar. These genetic and phenotypic properties suggest that the strains should be classified as representatives of a novel species and genus; the name Tepidanaerobacter syntrophicus gen. nov., sp. nov. is proposed. The type strain of Tepidanaerobacter syntrophicus is strain JLT (=JCM 12098T=NBRC 100060T=DSM 15584T).

Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird-of-paradise.

Abstract: Genome assemblies are currently being produced at an impressive rate by consortia and individual laboratories. The low costs and increasing efficiency of sequencing technologies now enable assembling genomes at unprecedented quality and contiguity. However, the difficulty in assembling repeat-rich and GC-rich regions (genomic "dark matter") limits insights into the evolution of genome structure and regulatory networks. Here, we compare the efficiency of currently available sequencing technologies (short/linked/long reads and proximity ligation maps) and combinations thereof in assembling genomic dark matter. By adopting different de novo assembly strategies, we compare individual draft assemblies to a curated multiplatform reference assembly and identify the genomic features that cause gaps within each assembly. We show that a multiplatform assembly implementing long-read, linked-read and proximity sequencing technologies performs best at recovering transposable elements, multicopy MHC genes, GC-rich microchromosomes and the repeat-rich W chromosome. Telomere-to-telomere assemblies are not a reality yet for most organisms, but by leveraging technology choice it is now possible to minimize genome assembly gaps for downstream analysis. We provide a roadmap to tailor sequencing projects for optimized completeness of both the coding and noncoding parts of nonmodel genomes.

Evaluation of magnetic material IIP@GO-Fe3O4 based on Kesambi wood (Schleichera oleosa) as a potential adsorbent for the removal of Cr(VI) from aqueous solutions

Abstract: Magnetic composite material modified ion imprinting polymer (IIP@GO-Fe3O4) based on GO from kesambi wood (Schleichera oleosa) was successfully synthesized by using a precipitation method. The physico-chemical characterization uses XRD, FTIR, BET-BJH and SEM-EDX. IIP@GO-Fe3O4 was applied to adsorb Cr(VI) from the water sample by utilizing the batch system. Various adsorption parameters for Cr(VI) such as adsorbent mass, pH, contact time and temperature were optimized in this investigation. The Cr(VI) maximum adsorption occurred when the adsorbent mass usage 0.04 g, pH 2, 40 min of contacts and at the temperature of 323 K. In this study ten kinetic and eight isothermal adsorption models were used to investigate the adsorption mechanism of Cr(VI) onto IIP@GO-Fe3O4. The kinetic modelling shows that the adsorption of Cr(VI) onto IIP@GO-Fe3O4 corresponds to the pseudo-second-order (PSO) model, while the adsorption isotherm corresponds to the Dubinin-Radushkevich (DKR) model with an adsorption capacity of 8.502 mg/g. The thermodynamic study has shown that the adsorption process can take place at a temperature of 323 K. The result showed that a higher adsorption selectivity on IIP@GO-Fe3O4 compares to NIP@GO-Fe3O4. The adsorbent materials gave better reusability because their adsorptive capacity remained at the same level (although it was used at least ten times).