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Showing papers by "James Cook University published in 2017"


Journal ArticleDOI
16 Mar 2017-Nature
TL;DR: The distinctive geographic footprints of recurrent bleaching on the Great Barrier Reef in 1998, 2002 and 2016 were determined by the spatial pattern of sea temperatures in each year, suggesting that local protection of reefs affords little or no resistance to extreme heat.
Abstract: During 2015–2016, record temperatures triggered a pan-tropical episode of coral bleaching, the third global-scale event since mass bleaching was first documented in the 1980s. Here we examine how and why the severity of recurrent major bleaching events has varied at multiple scales, using aerial and underwater surveys of Australian reefs combined with satellite-derived sea surface temperatures. The distinctive geographic footprints of recurrent bleaching on the Great Barrier Reef in 1998, 2002 and 2016 were determined by the spatial pattern of sea temperatures in each year. Water quality and fishing pressure had minimal effect on the unprecedented bleaching in 2016, suggesting that local protection of reefs affords little or no resistance to extreme heat. Similarly, past exposure to bleaching in 1998 and 2002 did not lessen the severity of bleaching in 2016. Consequently, immediate global action to curb future warming is essential to secure a future for coral reefs.

2,073 citations


Journal ArticleDOI
31 Mar 2017-Science
TL;DR: The negative effects of climate change cannot be adequately anticipated or prepared for unless species responses are explicitly included in decision-making and global strategic frameworks, and feedbacks on climate itself are documented.
Abstract: Distributions of Earth’s species are changing at accelerating rates, increasingly driven by human-mediated climate change. Such changes are already altering the composition of ecological communities, but beyond conservation of natural systems, how and why does this matter? We review evidence that climate-driven species redistribution at regional to global scales affects ecosystem functioning, human well-being, and the dynamics of climate change itself. Production of natural resources required for food security, patterns of disease transmission, and processes of carbon sequestration are all altered by changes in species distribution. Consideration of these effects of biodiversity redistribution is critical yet lacking in most mitigation and adaptation strategies, including the United Nation’s Sustainable Development Goals.

1,917 citations


Journal ArticleDOI
Mohammad H. Forouzanfar1, Patrick Liu1, Gregory A. Roth1, Marie Ng1, Stan Biryukov1, Laurie B. Marczak1, Lily Alexander1, Kara Estep1, Kalkidan Hassen Abate2, Tomi Akinyemiju3, Raghib Ali4, Nelson Alvis-Guzman5, Peter Azzopardi, Amitava Banerjee6, Till Bärnighausen7, Till Bärnighausen8, Arindam Basu9, Tolesa Bekele10, Derrick A Bennett4, Sibhatu Biadgilign, Ferrán Catalá-López11, Ferrán Catalá-López12, Valery L. Feigin13, João C. Fernandes14, Florian Fischer15, Alemseged Aregay Gebru16, Philimon Gona17, Rajeev Gupta, Graeme J. Hankey18, Graeme J. Hankey19, Jost B. Jonas20, Suzanne E. Judd3, Young-Ho Khang21, Ardeshir Khosravi, Yun Jin Kim22, Ruth W Kimokoti23, Yoshihiro Kokubo, Dhaval Kolte24, Alan D. Lopez25, Paulo A. Lotufo26, Reza Malekzadeh, Yohannes Adama Melaku16, Yohannes Adama Melaku27, George A. Mensah28, Awoke Misganaw1, Ali H. Mokdad1, Andrew E. Moran29, Haseeb Nawaz30, Bruce Neal, Frida Namnyak Ngalesoni31, Takayoshi Ohkubo32, Farshad Pourmalek33, Anwar Rafay, Rajesh Kumar Rai, David Rojas-Rueda, Uchechukwu K.A. Sampson28, Itamar S. Santos26, Monika Sawhney34, Aletta E. Schutte35, Sadaf G. Sepanlou, Girma Temam Shifa36, Girma Temam Shifa37, Ivy Shiue38, Ivy Shiue39, Bemnet Amare Tedla40, Amanda G. Thrift41, Marcello Tonelli42, Thomas Truelsen43, Nikolaos Tsilimparis, Kingsley N. Ukwaja, Olalekan A. Uthman44, Tommi Vasankari, Narayanaswamy Venketasubramanian, Vasiliy Victorovich Vlassov45, Theo Vos1, Ronny Westerman, Lijing L. Yan46, Yuichiro Yano47, Naohiro Yonemoto, Maysaa El Sayed Zaki, Christopher J L Murray1 
10 Jan 2017-JAMA
TL;DR: In international surveys, although there is uncertainty in some estimates, the rate of elevatedSBP (≥110-115 and ≥140 mm Hg) increased substantially between 1990 and 2015, and DALYs and deaths associated with elevated SBP also increased.
Abstract: Importance Elevated systolic blood (SBP) pressure is a leading global health risk. Quantifying the levels of SBP is important to guide prevention policies and interventions. Objective To estimate the association between SBP of at least 110 to 115 mm Hg and SBP of 140 mm Hg or higher and the burden of different causes of death and disability by age and sex for 195 countries and territories, 1990-2015. Design A comparative risk assessment of health loss related to SBP. Estimated distribution of SBP was based on 844 studies from 154 countries (published 1980-2015) of 8.69 million participants. Spatiotemporal Gaussian process regression was used to generate estimates of mean SBP and adjusted variance for each age, sex, country, and year. Diseases with sufficient evidence for a causal relationship with high SBP (eg, ischemic heart disease, ischemic stroke, and hemorrhagic stroke) were included in the primary analysis. Main Outcomes and Measures Mean SBP level, cause-specific deaths, and health burden related to SBP (≥110-115 mm Hg and also ≥140 mm Hg) by age, sex, country, and year. Results Between 1990-2015, the rate of SBP of at least 110 to 115 mm Hg increased from 73 119 (95% uncertainty interval [UI], 67 949-78 241) to 81 373 (95% UI, 76 814-85 770) per 100 000, and SBP of 140 mm Hg or higher increased from 17 307 (95% UI, 17 117-17 492) to 20 526 (95% UI, 20 283-20 746) per 100 000. The estimated annual death rate per 100 000 associated with SBP of at least 110 to 115 mm Hg increased from 135.6 (95% UI, 122.4-148.1) to 145.2 (95% UI 130.3-159.9) and the rate for SBP of 140 mm Hg or higher increased from 97.9 (95% UI, 87.5-108.1) to 106.3 (95% UI, 94.6-118.1). Loss of disability-adjusted life-years (DALYs) associated with SBP of at least 110 to 115 mm Hg increased from 148 million (95% UI, 134-162 million) to 211 million (95% UI, 193-231 million), and for SBP of 140 mm Hg or higher, the loss increased from 95.9 million (95% UI, 87.0-104.9 million) to 143.0 million (95% UI, 130.2-157.0 million). The largest numbers of SBP-related deaths were caused by ischemic heart disease (4.9 million [95% UI, 4.0-5.7 million]; 54.5%), hemorrhagic stroke (2.0 million [95% UI, 1.6-2.3 million]; 58.3%), and ischemic stroke (1.5 million [95% UI, 1.2-1.8 million]; 50.0%). In 2015, China, India, Russia, Indonesia, and the United States accounted for more than half of the global DALYs related to SBP of at least 110 to 115 mm Hg. Conclusions and Relevance In international surveys, although there is uncertainty in some estimates, the rate of elevated SBP (≥110-115 and ≥140 mm Hg) increased substantially between 1990 and 2015, and DALYs and deaths associated with elevated SBP also increased. Projections based on this sample suggest that in 2015, an estimated 3.5 billion adults had SBP of at least 110 to 115 mm Hg and 874 million adults had SBP of 140 mm Hg or higher.

1,494 citations


Journal ArticleDOI
01 Jun 2017-Nature
TL;DR: The global challenge is to steer reefs through the Anthropocene era in a way that maintains their biological functions and will require radical changes in the science, management and governance of coral reefs.
Abstract: Coral reefs support immense biodiversity and provide important ecosystem services to many millions of people Yet reefs are degrading rapidly in response to numerous anthropogenic drivers In the coming centuries, reefs will run the gauntlet of climate change, and rising temperatures will transform them into new configurations, unlike anything observed previously by humans Returning reefs to past configurations is no longer an option Instead, the global challenge is to steer reefs through the Anthropocene era in a way that maintains their biological functions Successful navigation of this transition will require radical changes in the science, management and governance of coral reefs

1,196 citations


Journal ArticleDOI
TL;DR: The 1992 "World Scientists' Warning to Humanity" as mentioned in this paper warned that humans were on a collision course with the natural world and that fundamental changes were urgently needed to avoid the consequences our present course would bring.
Abstract: Twenty-five years ago, the Union of Concerned Scientists and more than 1700 independent scientists, including the majority of living Nobel laureates in the sciences, penned the 1992 "World Scientists’ Warning to Humanity" (see supplemental file S1). These concerned professionals called on humankind to curtail environmental destruction and cautioned that "a great change in our stewardship of the Earth and the life on it is required, if vast human misery is to be avoided." In their manifesto, they showed that humans were on a collision course with the natural world. They expressed concern about current, impending, or potential damage on planet Earth involving ozone depletion, freshwater availability, marine life depletion, ocean dead zones, forest loss, biodiversity destruction, climate change, and continued human population growth. They proclaimed that fundamental changes were urgently needed to avoid the consequences our present course would bring.

811 citations


Journal ArticleDOI
TL;DR: A standard model for application in future IoT healthcare systems is proposed, and the state-of-the-art research relating to each area of the model is presented, evaluating their strengths, weaknesses, and overall suitability for a wearable IoT healthcare system.
Abstract: Internet of Things (IoT) technology has attracted much attention in recent years for its potential to alleviate the strain on healthcare systems caused by an aging population and a rise in chronic illness. Standardization is a key issue limiting progress in this area, and thus this paper proposes a standard model for application in future IoT healthcare systems. This survey paper then presents the state-of-the-art research relating to each area of the model, evaluating their strengths, weaknesses, and overall suitability for a wearable IoT healthcare system. Challenges that healthcare IoT faces including security, privacy, wearability, and low-power operation are presented, and recommendations are made for future research directions.

735 citations


Journal ArticleDOI
TL;DR: It is hypothesized that litter quality would increase with latitude (despite variation within regions) and traits would be correlated to produce ‘syndromes’ resulting from phylogeny and environmental variation, and it is found lower litter quality and higher nitrogen:phosphorus ratios in the tropics.
Abstract: Plant litter represents a major basal resource in streams, where its decomposition is partly regulated by litter traits. Litter-trait variation may determine the latitudinal gradient in decomposition in streams, which is mainly microbial in the tropics and detritivore-mediated at high latitudes. However, this hypothesis remains untested, as we lack information on large-scale trait variation for riparian litter. Variation cannot easily be inferred from existing leaf-trait databases, since nutrient resorption can cause traits of litter and green leaves to diverge. Here we present the first global-scale assessment of riparian litter quality by determining latitudinal variation (spanning 107°) in litter traits (nutrient concentrations; physical and chemical defences) of 151 species from 24 regions and their relationships with environmental factors and phylogeny. We hypothesized that litter quality would increase with latitude (despite variation within regions) and traits would be correlated to produce ‘syndromes’ resulting from phylogeny and environmental variation. We found lower litter quality and higher nitrogen:phosphorus ratios in the tropics. Traits were linked but showed no phylogenetic signal, suggesting that syndromes were environmentally determined. Poorer litter quality and greater phosphorus limitation towards the equator may restrict detritivore-mediated decomposition, contributing to the predominance of microbial decomposers in tropical streams.

616 citations


Journal ArticleDOI
30 Mar 2017-Nature
TL;DR: It is reported that many MPAs failed to meet thresholds for effective and equitable management processes, with widespread shortfalls in staff and financial resources; continued global expansion of MPAs without adequate investment in human and financial capacity is likely to lead to sub-optimal conservation outcomes.
Abstract: Marine protected areas (MPAs) are increasingly being used globally to conserve marine resources. However, whether many MPAs are being effectively and equitably managed, and how MPA management influences substantive outcomes remain unknown. We developed a global database of management and fish population data (433 and 218 MPAs, respectively) to assess: MPA management processes; the effects of MPAs on fish populations; and relationships between management processes and ecological effects. Here we report that many MPAs failed to meet thresholds for effective and equitable management processes, with widespread shortfalls in staff and financial resources. Although 71% of MPAs positively influenced fish populations, these conservation impacts were highly variable. Staff and budget capacity were the strongest predictors of conservation impact: MPAs with adequate staff capacity had ecological effects 2.9 times greater than MPAs with inadequate capacity. Thus, continued global expansion of MPAs without adequate investment in human and financial capacity is likely to lead to sub-optimal conservation outcomes.

604 citations


Journal ArticleDOI
TL;DR: Medicinal foods or metabolites might represent an effective and natural approach for countering the numerous immunological defects that contribute to T cell–dependent autoimmune diseases.
Abstract: Gut dysbiosis might underlie the pathogenesis of type 1 diabetes. In mice of the non-obese diabetic (NOD) strain, we found that key features of disease correlated inversely with blood and fecal concentrations of the microbial metabolites acetate and butyrate. We therefore fed NOD mice specialized diets designed to release large amounts of acetate or butyrate after bacterial fermentation in the colon. Each diet provided a high degree of protection from diabetes, even when administered after breakdown of immunotolerance. Feeding mice a combined acetate- and butyrate-yielding diet provided complete protection, which suggested that acetate and butyrate might operate through distinct mechanisms. Acetate markedly decreased the frequency of autoreactive T cells in lymphoid tissues, through effects on B cells and their ability to expand populations of autoreactive T cells. A diet containing butyrate boosted the number and function of regulatory T cells, whereas acetate- and butyrate-yielding diets enhanced gut integrity and decreased serum concentration of diabetogenic cytokines such as IL-21. Medicinal foods or metabolites might represent an effective and natural approach for countering the numerous immunological defects that contribute to T cell-dependent autoimmune diseases.

500 citations


Journal ArticleDOI
TL;DR: In this article, the authors present a framework for evidence-based guidance on how tasks to mobilise, translate, negotiate, synthesise and apply multiple forms of evidence can bridge knowledge systems.

452 citations


Journal ArticleDOI
TL;DR: In this article, a review of 634 publications on biochar and biochar-compost mixtures as soil amendments is presented to identify the potential gaps in our understanding of the role of these amendments in agriculture.

Journal ArticleDOI
TL;DR: In this article, the authors explore the evolution of case study research, discuss methodological variations, and summarize key elements with the aim of providing guidance on the available options for researchers wanting to use case study in their work.
Abstract: Over the last forty years, case study research has undergone substantial methodological development. This evolution has resulted in a pragmatic, flexible research approach, capable of providing comprehensive in-depth understanding of a diverse range of issues across a number of disciplines. Change and progress have stemmed from parallel influences of historical transformations in approaches to research and individual researcher's preferences, perspectives, and interpretations of this design. Researchers who have contributed to the development of case study research come from diverse disciplines with different philosophical perspectives, resulting in a variety of definitions and approaches. For the researcher new to using case study, such variety can create a confusing platform for its application. In this article, we explore the evolution of case study research, discuss methodological variations, and summarize key elements with the aim of providing guidance on the available options for researchers wanting to use case study in their work. URN: http://nbn-resolving.de/urn:nbn:de:0114-fqs1701195

Journal ArticleDOI
TL;DR: The duration and intensity of the physical task appear to be important factors in the decrease in physical performance due to mental fatigue, and the most important factor responsible for the negative impact of mental fatigue on endurance performance is a higher perceived exertion.
Abstract: Mental fatigue is a psychobiological state caused by prolonged periods of demanding cognitive activity. It has recently been suggested that mental fatigue can affect physical performance. Our objective was to evaluate the literature on impairment of physical performance due to mental fatigue and to create an overview of the potential factors underlying this effect. Two electronic databases, PubMed and Web of Science (until 28 April 2016), were searched for studies designed to test whether mental fatigue influenced performance of a physical task or influenced physiological and/or perceptual responses during the physical task. Studies using short (<30 min) self-regulatory depletion tasks were excluded from the review. A total of 11 articles were included, of which six were of strong and five of moderate quality. The general finding was a decline in endurance performance (decreased time to exhaustion and self-selected power output/velocity or increased completion time) associated with a higher than normal perceived exertion. Physiological variables traditionally associated with endurance performance (heart rate, blood lactate, oxygen uptake, cardiac output, maximal aerobic capacity) were unaffected by mental fatigue. Maximal strength, power, and anaerobic work were not affected by mental fatigue. The duration and intensity of the physical task appear to be important factors in the decrease in physical performance due to mental fatigue. The most important factor responsible for the negative impact of mental fatigue on endurance performance is a higher perceived exertion.

Journal ArticleDOI
TL;DR: This review will briefly explore major representatives of metallic biomaterials along with the key existing and emerging strategies for surface and bulk modification used to improve biointegration, mechanical strength and flexibility of biometals, and discuss their compatibility with the concept of 3D printing.
Abstract: Metallic biomaterials are engineered systems designed to provide internal support to biological tissues and they are being used largely in joint replacements, dental implants, orthopaedic fixations and stents. Higher biomaterial usage is associated with an increased incidence of implant-related complications due to poor implant integration, inflammation, mechanical instability, necrosis and infections, and associated prolonged patient care, pain and loss of function. In this review, we will briefly explore major representatives of metallic biomaterials along with the key existing and emerging strategies for surface and bulk modification used to improve biointegration, mechanical strength and flexibility of biometals, and discuss their compatibility with the concept of 3D printing.

Journal ArticleDOI
TL;DR: The necessity for consideration of alternative (e.g., hybrid) ecosystem states is highlighted, traits of resilient corals and coral reef ecosystems are discussed, and a decision tree for incorporating assisted evolution into restoration initiatives to enhance climate resilience of coral reefs is proposed.
Abstract: Many ecosystems around the world are rapidly deteriorating due to both local and global pressures, and perhaps none so precipitously as coral reefs. Management of coral reefs through maintenance (e.g., marine-protected areas, catchment management to improve water quality), restoration, as well as global and national governmental agreements to reduce greenhouse gas emissions (e.g., the 2015 Paris Agreement) is critical for the persistence of coral reefs. Despite these initiatives, the health and abundance of corals reefs are rapidly declining and other solutions will soon be required. We have recently discussed options for using assisted evolution (i.e., selective breeding, assisted gene flow, conditioning or epigenetic programming, and the manipulation of the coral microbiome) as a means to enhance environmental stress tolerance of corals and the success of coral reef restoration efforts. The 2014–2016 global coral bleaching event has sharpened the focus on such interventionist approaches. We highlight the necessity for consideration of alternative (e.g., hybrid) ecosystem states, discuss traits of resilient corals and coral reef ecosystems, and propose a decision tree for incorporating assisted evolution into restoration initiatives to enhance climate resilience of coral reefs.

Journal ArticleDOI
17 Feb 2017-Science
TL;DR: Using amplicon sequencing of the 16S ribosomal RNA gene, it is found that when seagrass meadows are present, there was a 50% reduction in the relative abundance of potential bacterial pathogens capable of causing disease in humans and marine organisms.
Abstract: Plants are important in urban environments for removing pathogens and improving water quality. Seagrass meadows are the most widespread coastal ecosystem on the planet. Although these plants are known to be associated with natural biocide production, they have not been evaluated for their ability to remove microbiological contamination. Using amplicon sequencing of the 16S ribosomal RNA gene, we found that when seagrass meadows are present, there was a 50% reduction in the relative abundance of potential bacterial pathogens capable of causing disease in humans and marine organisms. Moreover, field surveys of more than 8000 reef-building corals located adjacent to seagrass meadows showed twofold reductions in disease levels compared to corals at paired sites without adjacent seagrass meadows. These results highlight the importance of seagrass ecosystems to the health of humans and other organisms.

Journal ArticleDOI
TL;DR: Recent progress in this area is reviewed, with a focus on the interaction between different families of carbon nanostructures and microorganisms to evaluate their bactericidal performance.
Abstract: Swift developments in nanotechnology have prominently encouraged innovative discoveries across many fields. Carbon-based nanomaterials have emerged as promising platforms for a broad range of applications due to their unique mechanical, electronic, and biological properties. Carbon nanostructures (CNSs) such as fullerene, carbon nanotubes (CNTs), graphene and diamond-like carbon (DLC) have been demonstrated to have potent broad-spectrum antibacterial activities toward pathogens. In order to ensure the safe and effective integration of these structures as antibacterial agents into biomaterials, the specific mechanisms that govern the antibacterial activity of CNSs need to be understood, yet it is challenging to decouple individual and synergistic contributions of physical, chemical and electrical effects of CNSs on cells. In this article, recent progress in this area is reviewed, with a focus on the interaction between different families of carbon nanostructures and microorganisms to evaluate their bactericidal performance.

Journal ArticleDOI
TL;DR: This analysis identifies 64 endangered species in particular need of new or stricter protections and 514 species in need of improvements to fisheries management, and designate priority countries for such actions, recognizing the widely differing fishing pressures and conservation capacity.

Journal ArticleDOI
TL;DR: Pivotal to projecting the fate of coral reefs is the capacity of reef-building corals to acclimatize and adapt to climate change and the mechanisms that could enable adaptive plasticity in the coral holobiont, including the potential role of epigenetics and coral-associated microbes.
Abstract: Pivotal to projecting the fate of coral reefs is the capacity of reef-building corals to acclimatize and adapt to climate change. Transgenerational plasticity may enable some marine organisms to acclimatize over several generations and it has been hypothesized that epigenetic processes and microbial associations might facilitate adaptive responses. However, current evidence is equivocal and understanding of the underlying processes is limited. Here, we discuss prospects for observing transgenerational plasticity in corals and the mechanisms that could enable adaptive plasticity in the coral holobiont, including the potential role of epigenetics and coral-associated microbes. Well-designed and strictly controlled experiments are needed to distinguish transgenerational plasticity from other forms of plasticity, and to elucidate the underlying mechanisms and their relative importance compared with genetic adaptation.

Journal ArticleDOI
Nicholas J Kassebaum1, Hmwe H Kyu1, Leo Zoeckler1, Helen E Olsen1  +256 moreInstitutions (120)
TL;DR: Global trends were driven by reductions in mortality owing to infectious, nutritional, and neonatal disorders, which in the aggregate led to a relative increase in the importance of noncommunicable diseases and injuries in explaining global disease burden.
Abstract: Importance: Comprehensive and timely monitoring of disease burden in all age groups, including children and adolescents, is essential for improving population health.Objective: To quantify and describe levels and trends of mortality and nonfatal health outcomes among children and adolescents from 1990 to 2015 to provide a framework for policy discussion.Evidence Review: Cause-specific mortality and nonfatal health outcomes were analyzed for 195 countries and territories by age group, sex, and year from 1990 to 2015 using standardized approaches for data processing and statistical modeling, with subsequent analysis of the findings to describe levels and trends across geography and time among children and adolescents 19 years or younger. A composite indicator of income, education, and fertility was developed (Socio-demographic Index [SDI]) for each geographic unit and year, which evaluates the historical association between SDI and health loss.Findings: Global child and adolescent mortality decreased from 14.18 million (95% uncertainty interval [UI], 14.09 million to 14.28 million) deaths in 1990 to 7.26 million (95% UI, 7.14 million to 7.39 million) deaths in 2015, but progress has been unevenly distributed. Countries with a lower SDI had a larger proportion of mortality burden (75%) in 2015 than was the case in 1990 (61%). Most deaths in 2015 occurred in South Asia and sub-Saharan Africa. Global trends were driven by reductions in mortality owing to infectious, nutritional, and neonatal disorders, which in the aggregate led to a relative increase in the importance of noncommunicable diseases and injuries in explaining global disease burden. The absolute burden of disability in children and adolescents increased 4.3% (95% UI, 3.1%-5.6%) from 1990 to 2015, with much of the increase owing to population growth and improved survival for children and adolescents to older ages. Other than infectious conditions, many top causes of disability are associated with long-term sequelae of conditions present at birth (eg, neonatal disorders, congenital birth defects, and hemoglobinopathies) and complications of a variety of infections and nutritional deficiencies. Anemia, developmental intellectual disability, hearing loss, epilepsy, and vision loss are important contributors to childhood disability that can arise from multiple causes. Maternal and reproductive health remains a key cause of disease burden in adolescent females, especially in lower-SDI countries. In low-SDI countries, mortality is the primary driver of health loss for children and adolescents, whereas disability predominates in higher-SDI locations; the specific pattern of epidemiological transition varies across diseases and injuries.Conclusions and Relevance: Consistent international attention and investment have led to sustained improvements in causes of health loss among children and adolescents in many countries, although progress has been uneven. The persistence of infectious diseases in some countries, coupled with ongoing epidemiologic transition to injuries and noncommunicable diseases, require all countries to carefully evaluate and implement appropriate strategies to maximize the health of their children and adolescents and for the international community to carefully consider which elements of child and adolescent health should be monitored.

Journal ArticleDOI
TL;DR: It is argued that novel management actions will often be required to protect existing large old trees and ensure the recruitment of new cohorts of such trees, as many key characteristics ofLarge old trees such as extreme height, prolonged lifespans, and the presence of cavities can render such trees highly susceptible to a range of human influences.
Abstract: Large old trees are some of the most iconic biota on earth and are integral parts of many terrestrial ecosystems including those in tropical, temperate and boreal forests, deserts, savannas, agro-ecological areas, and urban environments. In this review, we provide new insights into the ecology, function, evolution and management of large old trees through broad cross-disciplinary perspectives from literatures in plant physiology, growth and development, evolution, habitat value for fauna and flora, and conservation management. Our review reveals that the diameter, height and longevity of large old trees varies greatly on an inter-specific basis, thereby creating serious challenges in defining large old trees and demanding an ecosystem- and species-specific definition that will only rarely be readily transferable to other species or ecosystems. Such variation is also manifested by marked inter-specific differences in the key attributes of large old trees (beyond diameter and height) such as the extent of buttressing, canopy architecture, the extent of bark micro-environments and the prevalence of cavities. We found that large old trees play an extraordinary range of critical ecological roles including in hydrological regimes, nutrient cycles and numerous ecosystem processes. Large old trees strongly influence the spatial and temporal distribution and abundance of individuals of the same species and populations of numerous other plant and animal species. We suggest many key characteristics of large old trees such as extreme height, prolonged lifespans, and the presence of cavities - which confer competitive and evolutionary advantages in undisturbed environments - can render such trees highly susceptible to a range of human influences. Large old trees are vulnerable to threats ranging from droughts, fire, pests and pathogens, to logging, land clearing, landscape fragmentation and climate change. Tackling such diverse threats is challenging because they often interact and manifest in different ways in different ecosystems, demanding targeted species- or ecosystem-specific responses. We argue that novel management actions will often be required to protect existing large old trees and ensure the recruitment of new cohorts of such trees. For example, fine-scale tree-level conservation such as buffering individual stems will be required in many environments such as in agricultural areas and urban environments. Landscape-level approaches like protecting places where large old trees are most likely to occur will be needed. However, this brings challenges associated with likely changes in tree distributions associated with climate change, because long-lived trees may presently exist in places unsuitable for the development of new cohorts of the same species. Appropriate future environmental domains for a species could exist in new locations where it has never previously occurred. The future distribution and persistence of large old trees may require controversial responses including assisted migration via seed or seedling establishment in new locales. However, the effectiveness of such approaches may be limited where key ecological features of large old trees (such as cavity presence) depend on other species such as termites, fungi and bacteria. Unless other species with similar ecological roles are present to fulfil these functions, these taxa might need to be moved concurrently with the target tree species.

Journal ArticleDOI
09 May 2017-eLife
TL;DR: These age results demonstrate that a morphologically primitive hominin, Homo naledi, survived into the later parts of the Pleistocene in Africa, and indicate a much younger age for the Homo nalingi fossils than have previously been hypothesized based on their morphology.
Abstract: Species of ancient humans and the extinct relatives of our ancestors are typically described from a limited number of fossils. However, this was not the case with Homo naledi. More than 1500 fossils representing at least 15 individuals of this species were unearthed from the Rising Star cave system in South Africa between 2013 and 2014. Found deep underground in the Dinaledi Chamber, the H. naledi fossils are the largest collection of a single species of an ancient human-relative discovered in Africa. After the discovery was reported, a number of questions still remained. Not least among these questions was: how old were the fossils? The material was undated, and predictions ranged from anywhere between 2 million years old and 100,000 years old. H. naledi shared several traits with the most primitive of our ancient relatives, including its small brain. As a result, many scientists guessed that H. naledi was an old species in our family tree, and possibly one of the earliest species to evolve in the genus Homo. Now, Dirks et al. – who include many of the researchers who were involved in the discovery of H. naledi – report that the fossils are most likely between 236,000 and 335,000 years old. These dates are based on measuring the concentration of radioactive elements, and the damage caused by these elements (which accumulates over time), in three fossilized teeth, plus surrounding rock and sediments from the cave chamber. Importantly, the most crucial tests were carried out at independent laboratories around the world, and the scientists conducted the tests without knowing the results of the other laboratories. Dirks et al. took these extra steps to make sure that the results obtained were reproducible and unbiased. The estimated dates are much more recent than many had predicted, and mean that H. naledi was alive at the same time as the earliest members of our own species – which most likely evolved between 300,000 and 200,000 years ago. These new findings demonstrate why it can be unwise to try to predict the age of a fossil based only on its appearance, and emphasize the importance of dating specimens via independent tests. Finally in two related reports, Berger et al. suggest how a primitive-looking species like H. naledi survived more recently than many would have predicted, while Hawks et al. describe the discovery of more H. naledi fossils from a separate chamber in the same cave system.

Journal ArticleDOI
TL;DR: A novel process for extracting transition metals, recovering lithium and regenerating cathode materials based on facile co-extraction and co-precipitation processes has been developed and a waste battery management model is introduced to guarantee the material supply for spent battery recycling.

Journal ArticleDOI
TL;DR: This work introduces 12 different forms of functional rarity along gradients of species scarcity and trait distinctiveness and highlights the potential key role offunctional rarity in the long-term and large-scale maintenance of ecosystem processes.
Abstract: Rarity has been a central topic for conservation and evolutionary biologists aiming to determine the species characteristics that cause extinction risk. More recently, beyond the rarity of species, the rarity of functions or functional traits, called functional rarity, has gained momentum in helping to understand the impact of biodiversity decline on ecosystem functioning. However, a conceptual framework for defining and quantifying functional rarity is still lacking. We introduce 12 different forms of functional rarity along gradients of species scarcity and trait distinctiveness. We then highlight the potential key role of functional rarity in the long-term and large-scale maintenance of ecosystem processes, as well as the necessary linkage between functional and evolutionary rarity.

Journal ArticleDOI
TL;DR: The most severe and notable instance ever reported of sudden and widespread dieback of mangrove vegetation was reported in Australia's remote Gulf of Carpentaria in 2015 and 2016 as mentioned in this paper, where the cause was not fully explained but the timing was coincident with an extreme weather event; notably one of high temperatures and low precipitation lacking storm winds.
Abstract: This study records and documents the most severe and notable instance ever reported of sudden and widespread dieback of mangrove vegetation. Between late 2015 and early 2016, extensive areas of mangrove tidal wetland vegetation died back along 1000km of the shoreline of Australia’s remote Gulf of Carpentaria. The cause is not fully explained, but the timing was coincident with an extreme weather event; notably one of high temperatures and low precipitation lacking storm winds. The dieback was severe and widespread, affecting more than 7400ha or 6% of mangrove vegetation in the affected area from Roper River estuary in the Northern Territory, east to Karumba in Queensland. At the time, there was an unusually lengthy period of severe drought conditions, unprecedented high temperatures and a temporary drop in sea level. Although consequential moisture stress appears to have contributed to the cause, this occurrence was further coincidental with heat-stressed coral bleaching. This article describes the effect and diagnostic features of this severe dieback event in the Gulf, and considers potential causal factors.

Journal ArticleDOI
TL;DR: Insight is provided into coupling the core microbiome framework with community ecology principals, and theoretical insights from other complex systems are drawn, to build a framework to aid in deciphering ecologically significant microbes within a corals' microbial soup.

Journal ArticleDOI
Martin J. P. Sullivan1, Joey Talbot1, Simon L. Lewis2, Simon L. Lewis1, Oliver L. Phillips1, Lan Qie1, Serge K. Begne3, Serge K. Begne1, Jérôme Chave4, Aida Cuni-Sanchez2, Wannes Hubau1, Gabriela Lopez-Gonzalez1, Lera Miles5, Abel Monteagudo-Mendoza6, Bonaventure Sonké3, Terry Sunderland7, Terry Sunderland8, Hans ter Steege9, Hans ter Steege10, Lee J. T. White11, Kofi Affum-Baffoe12, Shin-ichiro Aiba13, Everton Cristo de Almeida14, Edmar Almeida de Oliveira15, Patricia Alvarez-Loayza16, Esteban Alvarez Dávila, Ana Andrade17, Luiz E. O. C. Aragão18, Peter S. Ashton19, Gerardo A. Aymard C, Timothy R. Baker1, Michael Balinga8, Lindsay F. Banin, Christopher Baraloto20, Jean-François Bastin, Nicholas J. Berry21, Jan Bogaert22, Damien Bonal23, Frans Bongers24, Roel J. W. Brienen1, José Luís Camargo17, Carlos Cerón25, Victor Chama Moscoso6, Eric Chezeaux, Connie J. Clark16, Alvaro Cogollo Pacheco, James A. Comiskey26, James A. Comiskey27, Fernando Cornejo Valverde28, Eurídice N. Honorio Coronado28, Greta C. Dargie1, Stuart J. Davies29, Charles De Cannière30, Marie Noel Djuikouo K.31, Jean-Louis Doucet22, Terry L. Erwin26, Javier Silva Espejo6, Corneille E. N. Ewango32, Sophie Fauset1, Sophie Fauset33, Ted R. Feldpausch18, Rafael Herrera34, Rafael Herrera35, Martin Gilpin1, Emanuel Gloor1, Jefferson S. Hall29, David Harris36, Terese B. Hart37, Kuswata Kartawinata38, Lip Khoon Kho39, Kanehiro Kitayama40, Susan G. Laurance7, William F. Laurance7, Miguel E. Leal32, Thomas E. Lovejoy41, Jon C. Lovett1, Faustin Mpanya Lukasu42, Jean-Remy Makana32, Yadvinder Malhi43, Leandro Maracahipes44, Beatriz Schwantes Marimon15, Ben Hur Marimon Junior15, Andrew R. Marshall45, Paulo S. Morandi15, John Tshibamba Mukendi42, Jaques Mukinzi32, Reuben Nilus, Percy Núñez Vargas6, Nadir Pallqui Camacho6, Guido Pardo, Marielos Peña-Claros24, Pascal Petronelli, Georgia Pickavance1, Axel Dalberg Poulsen37, John R. Poulsen16, Richard B. Primack46, H. Priyadi47, H. Priyadi8, Carlos A. Quesada17, Jan Reitsma, Maxime Réjou-Méchain4, Zorayda Restrepo, Ervan Rutishauser, Kamariah Abu Salim48, Rafael de Paiva Salomão49, Ismayadi Samsoedin50, Douglas Sheil8, Douglas Sheil51, Rodrigo Sierra, Marcos Silveira52, J. W. Ferry Slik, Lisa Steel53, Hermann Taedoumg3, Sylvester Tan19, John Terborgh16, Sean C. Thomas54, Marisol Toledo, Peter M. Umunay55, Luis Valenzuela Gamarra, Ima Célia Guimarães Vieira49, Vincent A. Vos, Ophelia Wang56, Simon Willcock57, Simon Willcock58, Lise Zemagho3 
University of Leeds1, University College London2, University of Yaoundé I3, Paul Sabatier University4, United Nations Environment Programme5, National University of Saint Anthony the Abbot in Cuzco6, James Cook University7, Center for International Forestry Research8, Naturalis9, Utrecht University10, University of Stirling11, Forestry Commission12, Kagoshima University13, Federal University of Western Pará14, Universidade do Estado de Mato Grosso15, Duke University16, National Institute of Amazonian Research17, University of Exeter18, Harvard University19, Florida International University20, University of Edinburgh21, Gembloux Agro-Bio Tech22, Institut national de la recherche agronomique23, Wageningen University and Research Centre24, Central University of Ecuador25, Smithsonian Institution26, National Park Service27, Amazon.com28, Smithsonian Tropical Research Institute29, Université libre de Bruxelles30, University of Buea31, Wildlife Conservation Society32, State University of Campinas33, University of Vienna34, Venezuelan Institute for Scientific Research35, Royal Botanic Garden Edinburgh36, American Museum of Natural History37, Indonesian Institute of Sciences38, Malaysian Palm Oil Board39, Kyoto University40, George Mason University41, University of Kisangani42, University of Oxford43, Universidade Federal de Goiás44, University of York45, Boston University46, Swedish University of Agricultural Sciences47, Universiti Brunei Darussalam48, Museu Paraense Emílio Goeldi49, Ministry of Forestry50, Norwegian University of Life Sciences51, Universidade Federal do Acre52, World Wide Fund for Nature53, University of Toronto54, Yale University55, Northern Arizona University56, University of Southampton57, Bangor University58
TL;DR: In this article, a pan-tropical dataset of 360 plots located in structurally intact old-growth closed-canopy forest, surveyed using standardised methods, allowing a multi-scale evaluation of diversity-carbon relationships in tropical forests.
Abstract: Tropical forests are global centres of biodiversity and carbon storage. Many tropical countries aspire to protect forest to fulfil biodiversity and climate mitigation policy targets, but the conservation strategies needed to achieve these two functions depend critically on the tropical forest tree diversity-carbon storage relationship. Assessing this relationship is challenging due to the scarcity of inventories where carbon stocks in aboveground biomass and species identifications have been simultaneously and robustly quantified. Here, we compile a unique pan-tropical dataset of 360 plots located in structurally intact old-growth closed-canopy forest, surveyed using standardised methods, allowing a multi-scale evaluation of diversity-carbon relationships in tropical forests. Diversity-carbon relationships among all plots at 1 ha scale across the tropics are absent, and within continents are either weak (Asia) or absent (Amazonia, Africa). A weak positive relationship is detectable within 1 ha plots, indicating that diversity effects in tropical forests may be scale dependent. The absence of clear diversity-carbon relationships at scales relevant to conservation planning means that carbon-centred conservation strategies will inevitably miss many high diversity ecosystems. As tropical forests can have any combination of tree diversity and carbon stocks both require explicit consideration when optimising policies to manage tropical carbon and biodiversity.

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TL;DR: The result is a research and development agenda to accelerate malaria elimination and, in the longer term, transform the malaria community’s ability to eradicate it globally.
Abstract: Achieving a malaria-free world presents exciting scientific challenges as well as overwhelming health, equity, and economic benefits. WHO and countries are setting ambitious goals for reducing the burden and eliminating malaria through the "Global Technical Strategy" and 21 countries are aiming to eliminate malaria by 2020. The commitment to achieve these targets should be celebrated. However, the need for innovation to achieve these goals, sustain elimination, and free the world of malaria is greater than ever. Over 180 experts across multiple disciplines are engaged in the Malaria Eradication Research Agenda (malERA) Refresh process to address problems that need to be solved. The result is a research and development agenda to accelerate malaria elimination and, in the longer term, transform the malaria community's ability to eradicate it globally.

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TL;DR: It is found that structural complexity and reef zone are the strongest and most consistent predictors of reef fish abundance, biomass, species richness, and trophic structure, and that coral traits, diversity, and life histories provided additional predictive power for models of Reef fish assemblages, and were key drivers of structural complexity.
Abstract: With the ongoing loss of coral cover and the associated flattening of reef architecture, understanding the links between coral habitat and reef fishes is of critical importance. Here, we investigate whether considering coral traits and functional diversity provides new insights into the relationship between structural complexity and reef fish communities, and whether coral traits and community composition can predict structural complexity. Across 157 sites in Seychelles, Maldives, the Chagos Archipelago, and Australia's Great Barrier Reef, we find that structural complexity and reef zone are the strongest and most consistent predictors of reef fish abundance, biomass, species richness, and trophic structure. However, coral traits, diversity, and life histories provided additional predictive power for models of reef fish assemblages, and were key drivers of structural complexity. Our findings highlight that reef complexity relies on living corals-with different traits and life histories-continuing to build carbonate skeletons, and that these nuanced relationships between coral assemblages and habitat complexity can affect the structure of reef fish assemblages. Seascape-level estimates of structural complexity are rapid and cost effective with important implications for the structure and function of fish assemblages, and should be incorporated into monitoring programs.

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TL;DR: The persistence and spread of Wolbachia in release areas meeting minimum area requirements indicates the promise of successful large-scale population transformation of urban mosquito populations.
Abstract: Dengue-suppressing Wolbachia strains are promising tools for arbovirus control, particularly as they have the potential to self-spread following local introductions To test this, we followed the frequency of the transinfected Wolbachia strain wMel through Ae aegypti in Cairns, Australia, following releases at 3 nonisolated locations within the city in early 2013 Spatial spread was analysed graphically using interpolation and by fitting a statistical model describing the position and width of the wave For the larger 2 of the 3 releases (covering 097 km2 and 052 km2), we observed slow but steady spatial spread, at about 100–200 m per year, roughly consistent with theoretical predictions In contrast, the smallest release (011 km2) produced erratic temporal and spatial dynamics, with little evidence of spread after 2 years This is consistent with the prediction concerning fitness-decreasing Wolbachia transinfections that a minimum release area is needed to achieve stable local establishment and spread in continuous habitats Our graphical and likelihood analyses produced broadly consistent estimates of wave speed and wave width Spread at all sites was spatially heterogeneous, suggesting that environmental heterogeneity will affect large-scale Wolbachia transformations of urban mosquito populations The persistence and spread of Wolbachia in release areas meeting minimum area requirements indicates the promise of successful large-scale population transformation