Macquarie University

About: Macquarie University is a education organization based out in Sydney, New South Wales, Australia. It is known for research contribution in the topics: Population & Context (language use). The organization has 14075 authors who have published 47673 publications receiving 1416184 citations. The organization is also known as: Macquarie uni.

Analysis of immunoglobulin glycosylation by LC-ESI-MS of glycopeptides and oligosaccharides.

Abstract: Two LC-ESI-MS methods for the analysis of antibody glycosylation are presented. In the first approach, tryptic glycopeptides are separated by RP chromatography and analyzed by ESI-MS. This “glycopeptide strategy” allows a protein- and subclass-specific quantitation of both neutral and sialylated glycan structures. Additional information about under- or deglycosylation and the protein backbone, e.g., termini, can be extracted from the same data. In the second LC-ESI-MS method, released oligosaccharides are separated on porous graphitic carbon (PGC). A complete structural assignment of neutral and sialylated oligosaccharides occurring on antibodies is thereby achieved in one chromatographic run. The two methods were applied to polyclonal human IgG, to commercial mAb expressed in CHO cells (Rituximab, Xolair, and Herceptin), in SP2/0 (Erbitux and Remicade) or NS0 cells (Zenapax) and the anti-HIV antibody 4E10 produced either in CHO cells or in a human cell line. Both methods require comparably little sample preparation and can be applied to SDS-PAGE bands. They both outperform non-MS methods in terms of reliability of peak assignment and MALDI-MS of underivatized glycans with regard to the recording of sialylated structures. Regarding fast and yet detailed structural assignment, LC-MS on graphitic carbon supersedes all other current methods.

Corticosteroids in the prevention and treatment of acute respiratory distress syndrome (ARDS) in adults: meta-analysis

Abstract: Objective To systematically review the efficacy of steroids in the prevention of acute respiratory distress syndrome (ARDS) in critically ill adults, and treatment for established ARDS. Data sources Search of randomised controlled trials (1966-April 2007) of PubMed, Cochrane central register of controlled trials, Cochrane database of systematic reviews, American College of Physicians Journal Club, health technology assessment database, and database of abstracts of reviews of effects. Data extraction Two investigators independently assessed trials for inclusion and extracted data into standardised forms; differences were resolved by consensus. Data synthesis Steroid efficacy was assessed through a Bayesian hierarchical model for comparing the odds of developing ARDS and mortality (both expressed as odds ratio with 95% credible interval) and duration of ventilator free days, assessed as mean difference. Bayesian outcome probabilities were calculated as the probability that the odds ratio would be ≥1 or the probability that the mean difference would be ≥0. Nine randomised trials using variable dose and duration of steroids were identified. Preventive steroids (four studies) were associated with a trend to increase both the odds of patients developing ARDS (odds ratio 1.55, 95% credible interval 0.58 to 4.05; P(odds ratio ≥1)=86.6%), and the risk of mortality in those who subsequently developed ARDS (three studies, odds ratio 1.52, 95% credible interval 0.30 to 5.94; P(odds ratio ≥1)=72.8%). Steroid administration after onset of ARDS (five studies) was associated with a trend towards reduction in mortality (odds ratio 0.62, 95% credible interval 0.23 to 1.26; P(odds ratio ≥1)=6.8%). Steroid therapy increased the number of ventilator free days compared with controls (three studies, mean difference 4.05 days, 95% credible interval 0.22 to 8.71; P(mean difference ≥0)=97.9%). Steroids were not associated with increase in risk of infection. Conclusions A definitive role of corticosteroids in the treatment of ARDS in adults is not established. A possibility of reduced mortality and increased ventilator free days with steroids started after the onset of ARDS was suggested. Preventive steroids possibly increase the incidence of ARDS in critically ill adults.

Plant traits and wood fates across the globe: rotted, burned, or consumed?

Abstract: Wood represents the defining feature of forest systems, and often the carbon in woody debris has a long residence time. Globally, coarse dead wood contains 36‐72PgC, and understanding what controls the fate of this C is important for predicting C cycle responses to global change. The fate of a piece of wood may include one or more of the following: microbial decomposition, combustion, consumption by insects, and physical degradation. The probability of each fate is a function of both the abiotic environment and the wood traits of the species. The wood produced by different species varies substantially in chemical, micro- and macro-morphological traits; many of these characteristics of living species have ‘afterlife’ effects on the fate and turnover rate of dead wood. The colonization of dead wood by microbes and their activity depends on a large suite of wood chemical and anatomical traits, as well as whole-plant traits such as stem-diameter distributions. Fire consumption is driven by a slightly narrower range of traits with little dependence on wood anatomy. Wood turnover due to insects mainly depends on wood density and secondary chemistry. Physical degradation is a relatively minor loss pathway for most systems, which depends on wood chemistry and environmental conditions. We conclude that information about the traits of woody plants could be extremely useful for modeling and predicting rates of wood turnover across ecosystems. We demonstrate how this trait-based approach is currently limited by oversimplified treatment of dead wood pools in several leading global C models and by a lack of quantitative empirical data linking woody plant traits with the probability and rate of each turnover pathway. Explicitly including plant traits and woody debris pools in global vegetation climate models would improve predictions of wood turnover and its feedback to climate.

TrustLite: a security architecture for tiny embedded devices

Abstract: Embedded systems are increasingly pervasive, interdependent and in many cases critical to our every day life and safety Tiny devices that cannot afford sophisticated hardware security mechanisms are embedded in complex control infrastructures, medical support systems and entertainment products [51] As such devices are increasingly subject to attacks, new hardware protection mechanisms are needed to provide the required resilience and dependency at low costIn this work, we present the TrustLite security architecture for flexible, hardware-enforced isolation of software modules We describe mechanisms for secure exception handling and communication between protected modules, enabling seamless interoperability with untrusted operating systems and tasks TrustLite scales from providing a simple protected firmware runtime to advanced functionality such as attestation and trusted execution of userspace tasks Our FPGA prototype shows that these capabilities are achievable even on low-cost embedded systems

Sprouting ability across diverse disturbances and vegetation types worldwide

Abstract: 1 A widely used classification of plant response to fire divides species into two groups, sprouters and non-sprouters. In contrast, regeneration responses to catastrophic wind throw and small gap disturbance are more often considered a continuum. 2 We determined general patterns in the distribution of sprouting ability across species with respect to disturbance type and intensity, vegetation type and phylogeny and assessed the adequacy of a dichotomy for describing species' sprouting responses. These are important steps if sprouting is to be adopted widely and consistently as a functional trait. 3 Quantitative data were compiled from the literature and differences in species' sprouting proportions between disturbance classes were assessed using simple sprouting categorizations, visually using histograms and with mixture models. 4 The sprouter/non-sprouter dichotomy effectively characterized intense disturbances, such as fires resulting in stem-kill (peaks at 13%, 79% probability of sprouting). But there was a continuum of responses following less intense disturbances. Where substantial above-ground tissue was retained, as for wind throw, localized gap disturbances and low intensity fires, there were fewer non-sprouters and more intermediate sprouters. 5 Comparisons across diverse vegetation types and disturbances require quantitative records of sprouting, although the simple sprouter/non-sprouter dichotomy was sufficient for comparisons within fire. Patterns appeared consistent across broad vegetation types. Sprouting ability showed little phylogenetic conservatism.