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Showing papers by "Mitsubishi published in 2007"


Journal ArticleDOI
Shai Avidan1
TL;DR: This work considers tracking as a binary classification problem, where an ensemble of weak classifiers is trained online to distinguish between the object and the background, and combines them into a strong classifier using AdaBoost.
Abstract: We consider tracking as a binary classification problem, where an ensemble of weak classifiers is trained online to distinguish between the object and the background. The ensemble of weak classifiers is combined into a strong classifier using AdaBoost. The strong classifier is then used to label pixels in the next frame as either belonging to the object or the background, giving a confidence map. The peak of the map and, hence, the new position of the object, is found using mean shift. Temporal coherence is maintained by updating the ensemble with new weak classifiers that are trained online during tracking. We show a realization of this method and demonstrate it on several video sequences

1,109 citations


Journal ArticleDOI
TL;DR: An expert working group on the Comet assay was convened to review and discuss some of the procedures and methods recommended in previous documents, with particular attention directed at the in vivo rodent, alkaline (pH >13) version of the assay.
Abstract: As part of the Fourth International Workshop on Genotoxicity Testing (IWGT), held 9-10 September 2005 in San Francisco, California, an expert working group on the Comet assay was convened to review and discuss some of the procedures and methods recommended in previous documents. Particular attention was directed at the in vivo rodent, alkaline (pH >13) version of the assay. The aim was to review those protocol areas which were unclear or which required more detail in order to produce a standardized protocol with maximum acceptability by international regulatory agencies. The areas covered were: number of dose levels required, cell isolation techniques, measures of cytotoxicity, scoring of comets (i.e., manually or by image analysis), and the need for historical negative/positive control data. It was decided that a single limit dose was not sufficient although the required number of dose levels was not stipulated. The method of isolating cells was thought not to have a qualitative effect on the assay but more data were needed before a conclusion could be drawn. Concurrent measures of cytotoxicity were required with histopathological examination of tissues for necrosis or apoptosis as the "Gold Standard". As for analysing the comets, the consensus was that image analysis was preferred but not required. Finally, the minimal number of studies required to generate a historical positive or negative control database was not defined; rather the emphasis was placed on demonstrating the stability of the negative/positive control data. It was also agreed that a minimum reporting standard would be developed which would be consistent with OECD in vivo genotoxicity test method guidelines.

472 citations


Journal ArticleDOI
Paris Smaragdis1
TL;DR: The model proposed is a convolutive version of the nonnegative matrix factorization algorithm, which is very well suited for intuitively and efficiently representing magnitude spectra and its application on simultaneous speakers separation from monophonic recordings is presented.
Abstract: In this paper, we present a convolutive basis decomposition method and its application on simultaneous speakers separation from monophonic recordings. The model we propose is a convolutive version of the nonnegative matrix factorization algorithm. Due to the nonnegativity constraint this type of coding is very well suited for intuitively and efficiently representing magnitude spectra. We present results that reveal the nature of these basis functions and we introduce their utility in separating monophonic mixtures of known speakers

429 citations


Journal ArticleDOI
23 Aug 2007-Nature
TL;DR: It is shown that IgA class-switch recombination (CSR) is impaired in inducible-nitric-oxide-synthase-deficient (iNOS-/-; gene also called Nos2) mice, and the presence of a naturally occurring TNF-α/iNos-producing dendritic-cell subset may explain the predominance of IgA production in the MALT, critical for gut homeostasis.
Abstract: Immunoglobulin-A has an irreplaceable role in the mucosal defence against infectious microbes. In human and mouse, IgA-producing plasma cells comprise approximately 20% of total plasma cells of peripheral lymphoid tissues, whereas more than 80% of plasma cells produce IgA in mucosa-associated lymphoid tissues (MALT). One of the most biologically important and long-standing questions in immunology is why this 'biased' IgA synthesis takes place in the MALT but not other lymphoid organs. Here we show that IgA class-switch recombination (CSR) is impaired in inducible-nitric-oxide-synthase-deficient (iNOS-/-; gene also called Nos2) mice. iNOS regulates the T-cell-dependent IgA CSR through expression of transforming growth factor-beta receptor, and the T-cell-independent IgA CSR through production of a proliferation-inducing ligand (APRIL, also called Tnfsf13) and a B-cell-activating factor of the tumour necrosis factor (TNF) family (BAFF, also called Tnfsf13b). Notably, iNOS is preferentially expressed in MALT dendritic cells in response to the recognition of commensal bacteria by toll-like receptor. Furthermore, adoptive transfer of iNOS+ dendritic cells rescues IgA production in iNOS-/- mice. Further analysis revealed that the MALT dendritic cells are a TNF-alpha/iNOS-producing dendritic-cell subset, originally identified in mice infected with Listeria monocytogenes. The presence of a naturally occurring TNF-alpha/iNOS-producing dendritic-cell subset may explain the predominance of IgA production in the MALT, critical for gut homeostasis.

386 citations


Journal ArticleDOI
TL;DR: A simple, novel, and general method for approximating the sum of independent or arbitrarily correlated lognormal random variables (RV) by a single logn formalism RV without the extremely precise numerical computations at a large number of points that were required by the previously proposed methods.
Abstract: A simple, novel, and general method is presented in this paper for approximating the sum of independent or arbitrarily correlated lognormal random variables (RV) by a single lognormal RV. The method is also shown to be applicable for approximating the sum of lognormal-Rice and Suzuki RVs by a single lognormal RV. A sum consisting of a mixture of the above distributions can also be easily handled. The method uses the moment generating function (MGF) as a tool in the approximation and does so without the extremely precise numerical computations at a large number of points that were required by the previously proposed methods in the literature. Unlike popular approximation methods such as the Fenton-Wilkinson method and the Schwartz-Yeh method, which have their own respective short-comings, the proposed method provides the parametric flexibility to accurately approximate different portions of the lognormal sum distribution. The accuracy of the method is measured both visually, as has been done in the literature, as well as quantitatively, using curve-fitting metrics. An upper bound on the sensitivity of the method is also provided.

356 citations


Journal ArticleDOI
Tsuyoshi Tanaka1, Baltazar A. Antonio1, Shoshi Kikuchi1, Takashi Matsumoto1, Yoshiaki Nagamura1, Hisataka Numa1, Hiroaki Sakai1, Jianzhong Wu1, Takeshi Itoh1, Takeshi Itoh2, Takuji Sasaki1, Ryo Aono, Yasuyuki Fujii3, Takuya Habara, Erimi Harada, Masako Kanno, Yoshihiro Kawahara4, Hiroaki Kawashima, Hiromi Kubooka, Akihiro Matsuya, Hajime Nakaoka, Naomi Saichi, Ryoko Sanbonmatsu, Yoshiharu Sato, Yuji Shinso, Mami Suzuki, Jun-ichi Takeda, Motohiko Tanino, Fusano Todokoro, Kaori Yamaguchi, Naoyuki Yamamoto, Chisato Yamasaki, Tadashi Imanishi2, Toshihisa Okido, Masahito Tada, Kazuho Ikeo, Yoshio Tateno, Takashi Gojobori, Yao-Cheng Lin5, Fu Jin Wei5, Yue-Ie C. Hsing5, Qiang Zhao, Bin Han, Melissa Kramer6, Richard W. McCombie6, David Lonsdale7, Claire O'Donovan7, Eleanor J. Whitfield7, Rolf Apweiler7, Kanako O. Koyanagi8, Jitendra P. Khurana9, Saurabh Raghuvanshi9, Nagendra K. Singh10, Akhilesh K. Tyagi9, Georg Haberer, Masaki Fujisawa, Satomi Hosokawa, Yukiyo Ito, Hiroshi Ikawa, Michie Shibata, Mayu Yamamoto, Richard Bruskiewich11, Douglas R. Hoen12, Thomas E. Bureau12, Nobukazu Namiki13, Hajime Ohyanagi13, Yasumichi Sakai13, Satoshi Nobushima13, Katsumi Sakata13, Roberto A. Barrero14, Yutaka Sato15, Alexandre Souvorov16, Brian Smith-White16, Tatiana Tatusova16, Suyoung An17, Gynheung An17, Satoshi Oota, Galina Fuks18, Joachim Messing, Karen R. Christie19, Damien Lieberherr20, Hyeran Kim21, Andrea Zuccolo21, Rod A. Wing, Kan Nobuta22, Pamela J. Green22, Cheng Lu22, Blake C. Meyers22, Cristian Chaparro23, Benoît Piégu23, Olivier Panaud23, Manuel Echeverria23 
TL;DR: The latest version of the RAP-DB contains a variety of annotation data as follows: clone positions, structures and functions of 31 439 genes validated by cDNAs, RNA genes detected by massively parallel signature sequencing (MPSS) technology and sequence similarity, flanking sequences of mutant lines, transposable elements, etc.
Abstract: The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be useful for comprehensive understanding of the rice biology. Since the last publication of the RAP-DB, the IRGSP genome has been revised and reassembled. In addition, a large number of rice-expressed sequence tags have been released, and functional genomics resources have been produced worldwide. Thus, we have thoroughly updated our genome annotation by manual curation of all the functional descriptions of rice genes. The latest version of the RAP-DB contains a variety of annotation data as follows: clone positions, structures and functions of 31 439 genes validated by cDNAs, RNA genes detected by massively parallel signature sequencing (MPSS) technology and sequence similarity, flanking sequences of mutant lines, transposable elements, etc. Other annotation data such as Gnomon can be displayed along with those of RAP for comparison. We have also developed a new keyword search system to allow the user to access useful information. The RAP-DB is available at: http://rapdb.dna.affrc.go.jp/ and http://rapdb.lab.nig.ac.jp/.

342 citations


Journal ArticleDOI
TL;DR: Cusative viruses of postviral olfactory dysfunction (PVOD) have not yet been identified and the aim of this study was to investigate causative viruses in patients with PVOD.
Abstract: Objective Causative viruses of postviral olfactory dysfunction (PVOD) have not yet been identified. The aim of this study was to investigate causative viruses in patients with PVOD. Study design and methods Nasal discharge was collected from 24 patients with PVOD. We investigated the presence of 10 viruses in nasal discharge and examined the time course, with regard to changes in olfactory dysfunction and nasal obstruction in patients with PVOD, using questionnaires, acoustic rhinometry, and olfactory tests. Results Rhinoviruses were detected in 10 patients by electrophoresis. Rhinoviruses were also confirmed in four patients by nucleotide sequences. Viral serotypes were identified to be human rhinovirus (HRV)-40, HRV-75, HRV-78, and HRV-80. One of the four patients complained of anosmia, whereas another complained of dysosmia. Olfactory testing did not show significant improvement at 4, 8, 11, and 24 weeks after the first visit in the four patients, although results of acoustic rhinometry significantly improved. Two of the four patients complained of olfactory dysfunction even 6 months after the first visit. Coronavirus and parainfluenza virus were detected in one patient each, and Epstein-Barr viruses were detected in three patients. Conclusions This study for the first time detected rhinovirus, coronavirus, parainfluenza virus, and Epstein-Barr virus in nasal discharge of patients with PVOD. Furthermore, the present study suggests that rhinoviruses can cause olfactory dysfunction through mechanisms other than nasal obstruction and that rhinoviruses can induce various severities and different time courses of olfactory dysfunction.

311 citations


Journal ArticleDOI
Takeshi Itoh1, Takeshi Itoh2, Tsuyoshi Tanaka2, Roberto A. Barrero, Chisato Yamasaki1, Yasuyuki Fujii1, Phillip Hilton1, Baltazar A. Antonio2, Hideo Aono, Rolf Apweiler, Richard Bruskiewich3, Thomas E. Bureau4, Frances A. Burr5, Antonio Costa de Oliveira6, Galina Fuks7, Takuya Habara1, Georg Haberer, Bin Han, Erimi Harada1, Aiko T. Hiraki1, Hirohiko Hirochika2, Douglas R. Hoen4, Hiroki Hokari1, Satomi Hosokawa, Yue-Ie C. Hsing8, Hiroshi Ikawa9, Kazuho Ikeo, Tadashi Imanishi1, Tadashi Imanishi10, Yukiyo Ito, Pankaj Jaiswal11, Masako Kanno1, Yoshihiro Kawahara12, Yoshihiro Kawahara1, Toshiyuki Kawamura1, Hiroaki Kawashima1, Jitendra P. Khurana13, Shoshi Kikuchi2, Setsuko Komatsu2, Kanako O. Koyanagi10, Hiromi Kubooka1, Damien Lieberherr14, Yao-Cheng Lin8, David M. Lonsdale, Takashi Matsumoto2, Akihiro Matsuya1, W. Richard McCombie15, Joachim Messing7, Akio Miyao2, Nicola Mulder, Yoshiaki Nagamura2, Jongmin Nam16, Jongmin Nam17, Nobukazu Namiki, Hisataka Numa2, Shin Nurimoto1, Claire O'Donovan, Hajime Ohyanagi9, Toshihisa Okido, Satoshi Oota, Naoki Osato, Lance E. Palmer15, Lance E. Palmer18, Francis Quetier19, Saurabh Raghuvanshi13, Naomi Saichi1, Hiroaki Sakai1, Hiroaki Sakai2, Yasumichi Sakai9, Katsumi Sakata9, Tetsuya Sakurai, Fumihiko Sato1, Yoshiharu Sato1, Heiko Schoof20, Heiko Schoof21, Motoaki Seki, Michie Shibata, Yuji Shimizu9, Kazuo Shinozaki, Yuji Shinso1, Nagendra K. Singh22, Brian Smith-White23, Jun-ichi Takeda1, Motohiko Tanino1, Tatiana Tatusova23, Supat Thongjuea24, Fusano Todokoro1, Mika Tsugane, Akhilesh K. Tyagi13, Apichart Vanavichit24, Aihui Wang25, Rod A. Wing, Kaori Yamaguchi1, Mayu Yamamoto, Naoyuki Yamamoto1, Yeisoo Yu26, Hao Zhang1, Qiang Zhao, Kenichi Higo2, Benjamin Burr5, Takashi Gojobori1, Takuji Sasaki2 
TL;DR: The results suggest that natural selection may have played a role for duplicated genes in both species, so that duplication was suppressed or favored in a manner that depended on the function of a gene.
Abstract: We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates were manually curated. Functions were identified or inferred in 19,969 (70%) of the proteins, and 131 possible npRNAs (including 58 antisense transcripts) were found. Almost 5000 annotated protein-coding genes were found to be disrupted in insertional mutant lines, which will accelerate future experimental validation of the annotations. The rice loci were determined by using cDNA sequences obtained from rice and other representative cereals. Our conservative estimate based on these loci and an extrapolation suggested that the gene number of rice is ∼32,000, which is smaller than previous estimates. We conducted comparative analyses between rice and Arabidopsis thaliana and found that both genomes possessed several lineage-specific genes, which might account for the observed differences between these species, while they had similar sets of predicted functional domains among the protein sequences. A system to control translational efficiency seems to be conserved across large evolutionary distances. Moreover, the evolutionary process of protein-coding genes was examined. Our results suggest that natural selection may have played a role for duplicated genes in both species, so that duplication was suppressed or favored in a manner that depended on the function of a gene.

254 citations


Journal ArticleDOI
TL;DR: In this paper, the effects of injection timing and spark timing on engine performance and NO x emission were investigated under wide engine loads under a single-cylinder test engine using a high-pressure gas injector, and the results indicate that direct injection of hydrogen prevents backfire and high thermal efficiency and output power can be achieved by hydrogen injection during late compression stroke.

244 citations


Journal ArticleDOI
TL;DR: Evidence is provided for a role of polyglutamylation of α-tubulin in vivo, as a molecular traffic sign for targeting of KIF1 kinesin required for continuous synaptic transmission within the mammalian nervous system.
Abstract: Microtubules function as molecular tracks along which motor proteins transport a variety of cargo to discrete destinations within the cell. The carboxyl termini of α- and β-tubulin can undergo different posttranslational modifications, including polyglutamylation, which is particularly abundant within the mammalian nervous system. Thus, this modification could serve as a molecular “traffic sign” for motor proteins in neuronal cells. To investigate whether polyglutamylated α-tubulin could perform this function, we analyzed ROSA22 mice that lack functional PGs1, a subunit of α-tubulin-selective polyglutamylase. In wild-type mice, polyglutamylated α-tubulin is abundant in both axonal and dendritic neurites. ROSA22 mutants display a striking loss of polyglutamylated α-tubulin within neurons, including their neurites, which is associated with decreased binding affinity of certain structural microtubule-associated proteins and motor proteins, including kinesins, to microtubules purified from ROSA22-mutant brain. Of the kinesins examined, KIF1A, a subfamily of kinesin-3, was less abundant in neurites from ROSA22 mutants in vitro and in vivo, whereas the distribution of KIF3A (kinesin-2) and KIF5 (kinesin-1) appeared unaltered. The density of synaptic vesicles, a cargo of KIF1A, was decreased in synaptic terminals in the CA1 region of hippocampus in ROSA22 mutants. Consistent with this finding, ROSA22 mutants displayed more rapid depletion of synaptic vesicles than wild-type littermates after high-frequency stimulation. These data provide evidence for a role of polyglutamylation of α-tubulin in vivo, as a molecular traffic sign for targeting of KIF1 kinesin required for continuous synaptic transmission.

230 citations


Journal ArticleDOI
TL;DR: The results suggest that not only the stability, but also the adequate dynamics ("flexibility") of the bacterial community structure are important for the stable performance of the MBRs treating complex municipal wastewater.

Journal ArticleDOI
TL;DR: Two-dimensional phosphopeptide mapping using mutation of phosphorylation sites for MAPK revealed that the nine serine residues in Foxo1 are specifically phosphorylated by Erk and p38, and that this phosphorylations regulates the function of Foxo 1 as a coactivator for Ets-1.

Journal ArticleDOI
TL;DR: It is shown that the concept of mutual- information-accumulation can be realized with the help of fountain codes, and leads to a lower energy expenditure and a lower transmission time than energy accumulation.
Abstract: Cooperative communications, where parallel relays forward information to a destination node, can greatly improve the energy efficiency and latency in ad-hoc networks. However, current networks do not fully exploit its potential as they only use traditional energy-accumulation, which is often used in conjunction with repetition coding or cooperative space-time codes. In this paper, we show that the concept of mutual- information-accumulation can be realized with the help of fountain codes, and leads to a lower energy expenditure and a lower transmission time than energy accumulation. We then provide an analysis of the performance of mutual information accumulation in relay networks with N relay nodes. We first analyze the quasi-synchronuous scenario where the source stops transmitting and the relay nodes start transmitting after L relay nodes have successfully decoded the source data. We show that an optimum L exists, and is typically on the order of 3 or 4. We also give closed-form equations for the energy savings that can be achieved by the use of mutual-information-accumulation at the receiver. We then analyze and provide bounds for an alternate scenario where each relay node starts its transmission to the destination as soon as it has decoded the source data, independent of the state of the other relay nodes. This approach further reduces the transmission time, because the transmission by the relay nodes helps the other relay nodes that are still receiving.

Journal ArticleDOI
TL;DR: The intermolecular interaction energies of ion pairs of imidazolium-based ionic liquids were studied by MP2/6-311G level ab initio calculations and showed that the nature of the C(2)-H...X interaction is considerably different from that of conventional hydrogen bonds.
Abstract: The intermolecular interaction energies of ion pairs of imidazolium-based ionic liquids were studied by MP2/6-311G** level ab initio calculations. Although the hydrogen bond between the C2 hydrogen atom of an imidazolium cation and anion has been regarded as an important interaction in controlling the structures and physical properties of ionic liquids as in the cases of conventional hydrogen bonds, the calculations show that the nature of the C2–H⋯X interaction is considerably different from that of conventional hydrogen bonds. The interaction energies of the imidazolium cation with neighboring anions in the four crystals of ionic liquids were calculated. The size of the interaction is determined mainly by the distance between the imidazolium ring and anion. The calculated interaction energy is nearly inversely proportional to the distance, which shows that the charge–charge interaction is the dominant interaction in the attraction. The orientation of the anion relative to the C2–H bond does not greatly affect the size of the interaction energy. Calculated interaction energy potentials of 1,3-dimethylimidazolium tetrafluoroborate ([dmim][BF4]) complexes show that the C2–H bond does not prefer to point toward a fluorine atom of the BF4. This shows that the C2–H⋯X hydrogen bond is not essential for the attraction.

Journal ArticleDOI
TL;DR: In this paper, an improved nonpolar m-plane (1100) light emitting diode (LED) with a thick InGaN active layer of 8 nm and a thick GaN barrier layer of 37.5 nm for multi-quantum-well (MQW) structure have been fabricated on low extended defect bulk mplane GaN substrates using metal organic chemical vapor deposition (MOCVD).
Abstract: Improved nonpolar m-plane (1100) light emitting diode (LED) with a thick InGaN active layer of 8 nm and a thick GaN barrier layer of 37.5 nm for multi-quantum-well (MQW) structure have been fabricated on low extended defect bulk m-plane GaN substrates using metal organic chemical vapor deposition (MOCVD). The peak wavelength of the electroluminescence (EL) emission from the packaged LED was 468 nm. The output power and external quantum efficiency (EQE) were 8.9 mW and 16.8%, respectively, at a DC driving current of 20 mA.

Patent
15 Aug 2007
TL;DR: In this article, a shift register has an output stage formed by a first transistor connected between an output terminal and a first clock terminal, followed by a second transistor connecting the output terminal to a power source via a fifth transistor.
Abstract: A shift register has an output stage formed by a first transistor connected between an output terminal and a first clock terminal and a second transistor connected between the output terminal and a ground. Third and fourth transistors are connected in series between the gate of the first transistor (first node) and the ground. A second node between the third and fourth transistors is connected to a power source via a fifth transistor. The fifth transistor has its gate connected to the first node. Accordingly, when the third and fourth transistors are turned off to raise the first node in level, the fifth transistor is turned on, whereby a predetermined voltage is applied to the second node.

Journal ArticleDOI
07 Sep 2007-Cell
TL;DR: In neurons from Scrapper-knockout (SCR-KO) mice, RIM1 had a longer half-life with significant reduction in ubiquitination, indicating that SCRAPPER is the predominant ubiquitin ligase that mediates RIM 1 degradation.

Journal ArticleDOI
TL;DR: It is demonstrated that vascular maturation coordinated by endothelial cell/mural cell interactions redirects MT1-MMP expression to the neovessel tip where the protease regulates matrix remodeling at the leading edge of the developing vasculature.
Abstract: The membrane-anchored matrix metalloproteinase MT1-MMP (also known as Mmp14) plays a key role in the angiogenic process, but the mechanisms underlying its spatiotemporal regulation in the in vivo setting have not been defined. Using whole-mount immunohistochemical analysis and the lacZ gene inserted into the Mmp14 gene, we demonstrate that MT1-MMP vascular expression in vivo is confined largely to the sprouting tip of neocapillary structures where endothelial cell proliferation and collagen degradation are coordinately localized. During angiogenesis in vitro, wherein endothelial cells are stimulated to undergo neovessel formation in the presence or absence of accessory mural cells, site-specific MT1-MMP expression is shown to be controlled by crosstalk between endothelial cells and vascular smooth muscle cells (VSMC). When vessel maturation induced by VSMCs is inhibited by introducing a soluble form of the receptor tyrosine kinase Tek, MT1-MMP distribution is no longer restricted to the endothelial tip cells, but instead distributes throughout the neovessel network in vitro as well as ex vivo. Taken together, these data demonstrate that vascular maturation coordinated by endothelial cell/mural cell interactions redirects MT1-MMP expression to the neovessel tip where the protease regulates matrix remodeling at the leading edge of the developing vasculature.

Journal ArticleDOI
TL;DR: A DNA sequencing-based method used to detect mutations in the genome of drug-resistant Mycobacterium tuberculosis is useful for rapid detection of multiple-drug-resistant M. tuberculosis and for identifying novel mutations in drug- resistant M.culosis.
Abstract: We developed a DNA sequencing-based method to detect mutations in the genome of drug-resistant Mycobacterium tuberculosis. Drug resistance in M. tuberculosis is caused by mutations in restricted regions of the genome. Eight genome regions associated with drug resistance, including rpoB for rifampin (RIF), katG and the mabA (fabG1)-inhA promoter for isoniazid (INH), embB for ethambutol (EMB), pncA for pyrazinamide (PZA), rpsL and rrs for streptomycin (STR), and gyrA for levofloxacin, were amplified simultaneously by PCR, and the DNA sequences were determined. It took 6.5 h to complete all procedures. Among the 138 clinical isolates tested, 55 were resistant to at least one drug. Thirty-four of 38 INH-resistant isolates (89.5%), 28 of 28 RIF-resistant isolates (100%), 15 of 18 EMB-resistant isolates (83.3%), 18 of 30 STR-resistant isolates (60%), and 17 of 17 PZA-resistant isolates (100%) had mutations related to specific drug resistance. Eighteen of these mutations had not been reported previously. These novel mutations include one in rpoB, eight in katG, one in the mabA-inhA regulatory region, two in embB, five in pncA, and one in rrs. Escherichia coli isolates expressing individually five of the eight katG mutations showed loss of catalase and INH oxidation activities, and isolates carrying any of the five pncA mutations showed no pyrazinamidase activity, indicating that these mutations are associated with INH and PZA resistance, respectively. Our sequencing-based method was also useful for testing sputa from tuberculosis patients and for screening of mutations in Mycobacterium bovis. In conclusion, our new method is useful for rapid detection of multiple-drug-resistant M. tuberculosis and for identifying novel mutations in drug-resistant M. tuberculosis.

Journal ArticleDOI
I. Sarris1, Andrew R Nix
TL;DR: A 3-D criterion for maximizing the LoS MIMO capacity as a function of the distance, the orientation, and the spacing of the arrays is derived and it is shown that this criterion has the potential for superior MIMo performance in strong LoS channels.
Abstract: In this paper, the capacity of multiple-input multiple- output (MIMO) communication systems is investigated in the presence of a line-of-sight (LoS) component. Under this scenario, the channel-response matrix is usually rank deficient due to the high correlation between the LoS responses. Previous studies have shown that this problem can be overcome by the use of specifically designed antenna arrays. The antenna elements are positioned to preserve orthogonality and, hence, maximize the LoS-channel rank. To help in the design of such architectures, we derive a 3-D criterion for maximizing the LoS MIMO capacity as a function of the distance, the orientation, and the spacing of the arrays. The sensitivity of these systems to imperfect positioning and orientation is examined using a geometric MIMO model. The spectral efficiency is also investigated in the presence of scattered signals in the environment using a stochastic channel model and a Monte Carlo simulator. To demonstrate the validity of our predictions, we present the results of two MIMO measurement campaigns in an anechoic and an indoor environment where the measured capacities are compared with the capacities obtained from our models. All experimental results validate our predictions and, hence, confirm the potential for superior MIMO performance (when the developed criterion is applied) in strong LoS channels.

Journal ArticleDOI
TL;DR: The results of matrix-assisted laser desorption/ionization (MALDI) imaging and direct molecular identification using tandem mass spectrometry (MS/MS) in colon cancer liver metastasis show the feasibility of MALDI imaging as a tool for the analysis of pathological specimens.

Journal ArticleDOI
TL;DR: Y-39983 ophthalmic solution may be a candidate drug for lowering of intraocular pressure (IOP), since it increases conventional outflow and produces relatively few side effects.
Abstract: Purpose To elucidate the intraocular pressure (IOP)-lowering effects and associated characteristics of Y-39983, a selective Rho-associated coiled coil-forming protein kinase (ROCK) inhibitor derived from Y-27632, in animal eyes. Methods Y-39983 was compared with Y-27632 for selectivity of ROCK inhibition by biochemical assay. The IOP was monitored by pneumatonometer in albino rabbits and cynomolgus monkeys that were given topically administered Y-39983. The total outflow facility and uveoscleral outflow were measured by two-level constant-pressure perfusion and perfusion technique using fluorescein isothiocyanate-dextran, respectively, at 2 hours after topical administration of Y-39983 in albino rabbits. The ocular toxicologic effects of topical administration of Y-39983 were observed in albino rabbits and cynomolgus monkeys. Results A biochemical assay showed that Y-39983 inhibited ROCK more potently than Y-27632. In rabbits, topical administration of Y-39983 significantly increased conventional outflow by 65.5%, followed by significant, dose-dependent reduction in IOP. Maximum IOP reduction was 13.2 +/- 0.6 mm Hg (mean +/- SE) at 0.1% Y-39983 in rabbits. In monkeys, at 3 hours after topical administration of 0.05% Y-39983, maximum reduction of IOP was 2.5 +/- 0.8 mm Hg. No serious side effects were observed in ocular tissues except sporadic punctate subconjunctival hemorrhage during long-term topical administration of Y-39983 four times a day (at 2-hour intervals) in rabbits or monkeys. However, punctate subconjunctival hemorrhage was not observed with administration twice daily (at a 6-hour interval) or three times a day (at 5-hour intervals). Conclusions Y-39983 causes increased outflow facility followed by IOP reduction. Y-39983 ophthalmic solution may be a candidate drug for lowering of IOP, since it increases conventional outflow and produces relatively few side effects.

Journal ArticleDOI
TL;DR: There is an evolving trend towards increased resistance to clarithromycin with geographical and gender differences as well as between clinical disease conditions in Japan, and current empirical regimens are not based on susceptibility data representative of the general population.
Abstract: Surveillance of Helicobacter pylori antimicrobial susceptibility reflecting the general population in Japan is limited. The antimicrobial susceptibilities of 3,707 H. pylori strains isolated from gastric mucosa samples of previously untreated patients diagnosed with gastroduodenal diseases at 36 medical facilities located throughout Japan between October 2002 and September 2005 were evaluated. Using an agar dilution method for antimicrobial susceptibility testing of H. pylori, the MIC distributions and trends during the study period for clarithromycin, amoxicillin, and metronidazole were studied. While the MIC50 and MIC90 for clarithromycin did not change during the 3-year period, the MIC80 showed a 128-fold increase. Furthermore, the rate of resistance increased yearly from 18.9% (2002 to 2003) to 21.1% (2003 to 2004) and 27.7% (2004 to 2005). With a resistance rate of 19.2% among males compared to 27.0% among females, a significant gender difference was observed (P < 0.0001). Our study shows that in Japan, there is an evolving trend towards increased resistance to clarithromycin with geographical and gender differences as well as between clinical disease conditions. No significant changes in resistance were observed for amoxicillin and metronidazole during the period. While the benefit of H. pylori antimicrobial susceptibility testing has been debated in Japan, current empirical regimens are not based on susceptibility data representative of the general population. The development of an effective H. pylori eradication regimen in Japan will require continued resistance surveillance as well as a better understanding of the epidemiology of resistance.

Journal ArticleDOI
TL;DR: Early diagnosis of nonocclusive mesenteric ischemia is possible using the above criteria and MDCT, and initiation of PGE1 treatment may increase survival in patients with NOMI.
Abstract: Objectives:The aim of the study was to establish a procedure for early diagnosis and treatment of nonocclusive mesenteric ischemia (NOMI).Background:NOMI has a high mortality rate, and early diagnosis and treatment are important for improving survival in patients with this condition.Methods:The subj

Journal ArticleDOI
Norikazu Suzuki1, M. Haritani1, J. Yang2, Rei Hino1, Eiji Shamoto1 
TL;DR: In this paper, an ultrasonic elliptical vibration cutting is applied to the ultra-precision machining of tungsten alloy molds for optical glass parts in the present research.

Journal ArticleDOI
TL;DR: Results indicate that the Tudor-related proteins constitute an evolutionarily conserved class of nuage components in the germ-line, and their localization or accumulation to nuage is likely conferred by a Tudor domain structure and downstream of Mvh, while the characteristic repeated architecture of the domain is functionally essential for the differentiation of germ cells.

Journal ArticleDOI
TL;DR: Simulations show that serial or parallel interference cancellation can be used to drastically reduce the error floor in conventional receivers and, depending on the SNR and the origin of the ICI, one of the schemes performs best.
Abstract: We consider orthogonal frequency-division multiplexing systems with intercarrier interference (ICI) due to insufficient cyclic prefix and/or temporal variations Intersymbol interference (ISI) and ICI lead to an error floor in conventional receivers We suggest two techniques for the equalization of ICI The first, called "operator-perturbation technique" is an iterative technique for the inversion of a linear system of equations Alternatively, we show that serial or parallel interference cancellation can be used to drastically reduce the error floor Simulations show that, depending on the SNR and the origin of the ICI, one of the schemes performs best In all cases, our schemes lead to a drastic reduction of the bit error rate

Journal ArticleDOI
TL;DR: It was found that S1P-induced migration and endocytosis were at an extremely low level in mature DCs prepared from S1p3-knockout mice, indicating that S4 T cell migration toward S1 P is highly dependent on S1F1.
Abstract: Dendritic cells (DCs) and lymphocytes are known to show a migratory response to the phospholipid mediator, sphingosine 1-phosphate (S1P). However, it is unclear whether the same S1P receptor subtype mediates the migration of lymphocytes and DCs toward S1P. In this study, we investigated the involvement of S1P receptor subtypes in S1P-induced migration of CD4 T cells and bone marrow-derived DCs in mice. A potent S1P receptor agonist, the (S)-enantiomer of FTY720-phosphate [(S)-FTY720-P], at 0.1 nM or higher and a selective S1P receptor type 1 (S1P(1)) agonist, SEW2871, at 0.1 muM or higher induced a dose-dependent down-regulation of S1P(1). The pretreatment with these compounds resulted in a significant inhibition of mouse CD4 T cell migration toward S1P. Thus, it is revealed that CD4 T cell migration toward S1P is highly dependent on S1P(1). Mature DCs, when compared with CD4 T cells or immature DCs, expressed a relatively higher level of S1P(3) mRNA. S1P at 10-1000 nM induced a marked migration and significantly enhanced the endocytosis of FITC-dextran in mature but not immature DCs. Pretreatment with (S)-FTY720-P at 0.1 microM or higher resulted in a significant inhibition of S1P-induced migration and endocytosis in mature DCs, whereas SEW2871 up to 100 microM did not show any clear effect. Moreover, we found that S1P-induced migration and endocytosis were at an extremely low level in mature DCs prepared from S1P(3)-knockout mice. These results indicate that S1P regulates migration and endocytosis of murine mature DCs via S1P(3) but not S1P(1).

Journal ArticleDOI
TL;DR: The results suggest that rearrangement of biosynthetic genes in the order of the metabolic pathway by the OGAB method could be a useful approach for metabolic engineering.
Abstract: We attempted to optimize the production of zeaxanthin in Escherichia coli by reordering five biosynthetic genes in the natural carotenoid cluster of Pantoea ananatis. Newly designed operons for zeaxanthin production were constructed by the ordered gene assembly in Bacillus subtilis (OGAB) method, which can assemble multiple genes in one step using an intrinsic B. subtilis plasmid transformation system. The highest level of production of zeaxanthin in E. coli (820 μg/g [dry weight]) was observed in the transformant with a plasmid in which the gene order corresponds to the order of the zeaxanthin metabolic pathway (crtE-crtB-crtI-crtY-crtZ), among a series of plasmids with circularly permuted gene orders. Although two of five operons using intrinsic zeaxanthin promoters failed to assemble in B. subtilis, the full set of operons was obtained by repressing operon expression during OGAB assembly with a pR promoter-cI repressor system. This result suggests that repressing the expression of foreign genes in B. subtilis is important for their assembly by the OGAB method. For all tested operons, the abundance of mRNA decreased monotonically with the increasing distance of the gene from the promoter in E. coli, and this may influence the yield of zeaxanthin. Our results suggest that rearrangement of biosynthetic genes in the order of the metabolic pathway by the OGAB method could be a useful approach for metabolic engineering.

Patent
27 Dec 2007
TL;DR: In this paper, a structure for mounting a battery onto an electric vehicle comprising a body member made from metal, forming a body of the electric vehicle, a battery case made from resin, containing the battery charging electric power for driving the vehicle, and a connecting member connecting between the framework member and the body member is presented.
Abstract: A structure for mounting a battery onto an electric vehicle comprising: a body member, which is made from metal, forming a body of the electric vehicle a battery case, which is made from resin, containing the battery charging electric power for driving the electric vehicle; a framework member, which is made from metal, being embedded in the battery case; and a connecting member connecting between the framework member and the body member