National Scientific and Technical Research Council

About: National Scientific and Technical Research Council is a government organization based out in Buenos Aires, Argentina. It is known for research contribution in the topics: Population & Catalysis. The organization has 36143 authors who have published 62683 publications receiving 1013255 citations. The organization is also known as: CONICET.

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

Abstract: In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. For example, a key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process versus those that measure flux through the autophagy pathway (i.e., the complete process including the amount and rate of cargo sequestered and degraded). In particular, a block in macroautophagy that results in autophagosome accumulation must be differentiated from stimuli that increase autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. It is worth emphasizing here that lysosomal digestion is a stage of autophagy and evaluating its competence is a crucial part of the evaluation of autophagic flux, or complete autophagy. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. Along these lines, because of the potential for pleiotropic effects due to blocking autophagy through genetic manipulation, it is imperative to target by gene knockout or RNA interference more than one autophagy-related protein. In addition, some individual Atg proteins, or groups of proteins, are involved in other cellular pathways implying that not all Atg proteins can be used as a specific marker for an autophagic process. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular assays, we hope to encourage technical innovation in the field.

The clustering of galaxies in the completed SDSS-III Baryon Oscillation Spectroscopic Survey: cosmological analysis of the DR12 galaxy sample

Abstract: We present cosmological results from the final galaxy clustering data set of the Baryon Oscillation Spectroscopic Survey, part of the Sloan Digital Sky Survey III. Our combined galaxy sample comprises 1.2 million massive galaxies over an effective area of 9329 deg^2 and volume of 18.7 Gpc^3, divided into three partially overlapping redshift slices centred at effective redshifts 0.38, 0.51 and 0.61. We measure the angular diameter distance and Hubble parameter H from the baryon acoustic oscillation (BAO) method, in combination with a cosmic microwave background prior on the sound horizon scale, after applying reconstruction to reduce non-linear effects on the BAO feature. Using the anisotropic clustering of the pre-reconstruction density field, we measure the product D_MH from the Alcock–Paczynski (AP) effect and the growth of structure, quantified by fσ_8(z), from redshift-space distortions (RSD). We combine individual measurements presented in seven companion papers into a set of consensus values and likelihoods, obtaining constraints that are tighter and more robust than those from any one method; in particular, the AP measurement from sub-BAO scales sharpens constraints from post-reconstruction BAOs by breaking degeneracy between D_M and H. Combined with Planck 2016 cosmic microwave background measurements, our distance scale measurements simultaneously imply curvature Ω_K = 0.0003 ± 0.0026 and a dark energy equation-of-state parameter w = −1.01 ± 0.06, in strong affirmation of the spatially flat cold dark matter (CDM) model with a cosmological constant (ΛCDM). Our RSD measurements of fσ_8, at 6 per cent precision, are similarly consistent with this model. When combined with supernova Ia data, we find H_0 = 67.3 ± 1.0 km s^−1 Mpc^−1 even for our most general dark energy model, in tension with some direct measurements. Adding extra relativistic species as a degree of freedom loosens the constraint only slightly, to H_0 = 67.8 ± 1.2 km s^−1 Mpc^−1. Assuming flat ΛCDM, we find Ω_m = 0.310 ± 0.005 and H_0 = 67.6 ± 0.5 km s^−1 Mpc^−1, and we find a 95 per cent upper limit of 0.16 eV c^−2 on the neutrino mass sum.

A self-consistent anisotropic approach for the simulation of plastic deformation and texture development of polycrystals : application to zirconium alloys

Abstract: We present in this work a visco-plastic self-consistent (VPSC) anisotropic approach for modeling the plastic deformation of polycrystals, together with a thorough discussion of the assumptions involved and the range of application of such approach. We use the VPSC model for predicting texture development during rolling and axisymmetric deformation of Zirconium alloys, and to calculate the yield locus and the Lankford coefficient of rolled Zircaloy sheet. We compare our results with experimental data and find that they are in good agreement with the available experimental evidence. We also compare the VPSC predictions with the ones of a Full Constraints approach and observe that they differ both quantitatively and qualitatively: according with the predictions of the VPSC scheme, deformation is accommodated mostly by the soft systems, the twinning activity is much lower, and fewer systems are active, in average, per grain. These results are a consequence of having accounted for the grain interaction with its surroundings, which is a crucial aspect when modeling plastically anisotropic materials.

Grids of stellar models with rotation - I. Models from 0.8 to 120 M⊙ at solar metallicity (Z = 0.014)

Abstract: Aims. Many topical astrophysical research areas, such as the properties of planet host stars, the nature of the progenitors of different types of supernovae and gamma ray bursts, and the evolution of galaxies, require complete and homogeneous sets of stellar models at different metallicities in order to be studied during the whole of cosmic history. We present here a first set of models for solar metallicity, where the effects of rotation are accounted for in a homogeneous way.Methods. We computed a grid of 48 different stellar evolutionary tracks, both rotating and non-rotating, at Z = 0.014, spanning a wide mass range from 0.8 to 120 M ⊙ . For each of the stellar masses considered, electronic tables provide data for 400 stages along the evolutionary track and at each stage, a set of 43 physical data are given. These grids thus provide an extensive and detailed data basis for comparisons with the observations. The rotating models start on the zero-age main sequence (ZAMS) with a rotation rate υ ini /υ crit = 0.4. The evolution is computed until the end of the central carbon-burning phase, the early asymptotic giant branch (AGB) phase, or the core helium-flash for, respectively, the massive, intermediate, and both low and very low mass stars. The initial abundances are those deduced by Asplund and collaborators, which best fit the observed abundances of massive stars in the solar neighbourhood. We update both the opacities and nuclear reaction rates, and introduce new prescriptions for the mass-loss rates as stars approach the Eddington and/or the critical velocity. We account for both atomic diffusion and magnetic braking in our low-mass star models.Results. The present rotating models provide a good description of the average evolution of non-interacting stars. In particular, they reproduce the observed main-sequence width, the positions of the red giant and supergiant stars in the Hertzsprung-Russell (HR) diagram, the observed surface compositions and rotational velocities. Very interestingly, the enhancement of the mass loss during the red-supergiant stage, when the luminosity becomes supra-Eddington in some outer layers, help models above 15−20 M ⊙ to lose a significant part of their hydrogen envelope and evolve back into the blue part of the HR diagram. This result has interesting consequences for the blue to red supergiant ratio, the minimum mass for stars to become Wolf-Rayet stars, and the maximum initial mass of stars that explode as type II−P supernovae.