Institution
Oregon State University
Education•Corvallis, Oregon, United States•
About: Oregon State University is a education organization based out in Corvallis, Oregon, United States. It is known for research contribution in the topics: Population & Climate change. The organization has 28192 authors who have published 64044 publications receiving 2634108 citations. The organization is also known as: Oregon Agricultural College & OSU.
Topics: Population, Climate change, Gene, Upwelling, Soil water
Papers published on a yearly basis
Papers
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United States Department of Agriculture1, Oregon State University2, Macquarie University3, Washington State University4, Wageningen University and Research Centre5, J. Craig Venter Institute6, Utah State University7, Chonnam National University8, Texas A&M University9, University of California, Berkeley10, Rutgers University11
TL;DR: A comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences found genes for traits that were not known previously in the strains, highlighting the enormous heterogeneity of the P. fluorescenceens group and the importance of the variable genome in tailoring individual strains to their specific lifestyles and functional repertoire.
Abstract: We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens group including seven new genomic sequences. These strains exhibit a diverse spectrum of traits involved in biological control and other multitrophic interactions with plants, microbes, and insects. Multilocus sequence analysis placed the strains in three sub-clades, which was reinforced by high levels of synteny, size of core genomes, and relatedness of orthologous genes between strains within a sub-clade. The heterogeneity of the P. fluorescens group was reflected in the large size of its pan-genome, which makes up approximately 54% of the pan-genome of the genus as a whole, and a core genome representing only 45–52% of the genome of any individual strain. We discovered genes for traits that were not known previously in the strains, including genes for the biosynthesis of the siderophores achromobactin and pseudomonine and the antibiotic 2-hexyl-5-propyl-alkylresorcinol; novel bacteriocins; type II, III, and VI secretion systems; and insect toxins. Certain gene clusters, such as those for two type III secretion systems, are present only in specific sub-clades, suggesting vertical inheritance. Almost all of the genes associated with multitrophic interactions map to genomic regions present in only a subset of the strains or unique to a specific strain. To explore the evolutionary origin of these genes, we mapped their distributions relative to the locations of mobile genetic elements and repetitive extragenic palindromic (REP) elements in each genome. The mobile genetic elements and many strain-specific genes fall into regions devoid of REP elements (i.e., REP deserts) and regions displaying atypical tri-nucleotide composition, possibly indicating relatively recent acquisition of these loci. Collectively, the results of this study highlight the enormous heterogeneity of the P. fluorescens group and the importance of the variable genome in tailoring individual strains to their specific lifestyles and functional repertoire.
547 citations
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TL;DR: In this article, an airborne pulsed laser developed by NASA which scans a swath of five 10-m diameter footprints along the aircraft's flightpath, captures the power of the reflected laser pulse as a function of height from the top of the canopy to the ground.
547 citations
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Oregon State University1, University of Illinois at Urbana–Champaign2, North Carolina State University3, Michigan State University4, James Hutton Institute5, UPRRP College of Natural Sciences6, University of California, Davis7, Colorado State University8, University of North Carolina at Chapel Hill9
TL;DR: In this paper, the authors identify priorities for research in this area: (1) develop model host-microbiome systems for crop plants and non-crop plants with associated microbial culture collections and reference genomes, (2) define core microbiomes and metagenomes in these model systems, (3) elucidate the rules of synthetic, functionally programmable microbiome assembly, and (4) determine functional mechanisms of plant microbiome interactions.
Abstract: Feeding a growing world population amidst climate change requires optimizing the reliability, resource use, and environmental impacts of food production. One way to assist in achieving these goals is to integrate beneficial plant microbiomes-i.e., those enhancing plant growth, nutrient use efficiency, abiotic stress tolerance, and disease resistance-into agricultural production. This integration will require a large-scale effort among academic researchers, industry researchers, and farmers to understand and manage plant-microbiome interactions in the context of modern agricultural systems. Here, we identify priorities for research in this area: (1) develop model host-microbiome systems for crop plants and non-crop plants with associated microbial culture collections and reference genomes, (2) define core microbiomes and metagenomes in these model systems, (3) elucidate the rules of synthetic, functionally programmable microbiome assembly, (4) determine functional mechanisms of plant-microbiome interactions, and (5) characterize and refine plant genotype-by-environment-by-microbiome-by-management interactions. Meeting these goals should accelerate our ability to design and implement effective agricultural microbiome manipulations and management strategies, which, in turn, will pay dividends for both the consumers and producers of the world food supply.
547 citations
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TL;DR: In this article, the authors investigate a central tenet of the resource-based view of the firm that tacit knowledge often lies at the core of sustainable competitive advantage and attempt to articulate it.
Abstract: In this study, we investigate a central tenet of the resource-based view of the firm舒that tacit knowledge often lies at the core of sustainable competitive advantage舒and attempt to articulate it wi...
546 citations
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Dartmouth College1, Uppsala University2, Nagaoka University of Technology3, University of Copenhagen4, Heidelberg University5, Natural Resources Canada6, Oregon State University7, Centre national de la recherche scientifique8, Korean Ocean Research and Development Institute9, Swansea University10, University of Bern11, British Antarctic Survey12, University of Kansas13, National Institute of Polar Research14, University of Iceland15, Stockholm University16, Vrije Universiteit Brussel17, University of Colorado Boulder18, Alfred Wegener Institute for Polar and Marine Research19, University of Washington20, Arctic and Antarctic Research Institute21, Desert Research Institute22, Hokkaido University23, University of Grenoble24, University of California, San Diego25, Université libre de Bruxelles26, Utrecht University27, Oeschger Centre for Climate Change Research28, Max Planck Society29, Swiss Federal Institute for Forest, Snow and Landscape Research30, ETH Zurich31, United Arab Emirates University32, Paul Scherrer Institute33, École Polytechnique Fédérale de Lausanne34, University of East Anglia35, Geological Survey of Canada36
TL;DR: In this paper, the North Greenland Eemian Ice Drilling (NEEM) ice core was extracted from folded Greenland ice using globally homogeneous parameters known from dated Greenland and Antarctic ice-core records.
Abstract: Efforts to extract a Greenland ice core with a complete record of the Eemian interglacial (130,000 to 115,000 years ago) have until now been unsuccessful. The response of the Greenland ice sheet to the warmer-than-present climate of the Eemian has thus remained unclear. Here we present the new North Greenland Eemian Ice Drilling ('NEEM') ice core and show only a modest ice-sheet response to the strong warming in the early Eemian. We reconstructed the Eemian record from folded ice using globally homogeneous parameters known from dated Greenland and Antarctic ice-core records. On the basis of water stable isotopes, NEEM surface temperatures after the onset of the Eemian (126,000 years ago) peaked at 8 +/- 4 degrees Celsius above the mean of the past millennium, followed by a gradual cooling that was probably driven by the decreasing summer insolation. Between 128,000 and 122,000 years ago, the thickness of the northwest Greenland ice sheet decreased by 400 +/- 250 metres, reaching surface elevations 122,000 years ago of 130 +/- 300 metres lower than the present. Extensive surface melt occurred at the NEEM site during the Eemian, a phenomenon witnessed when melt layers formed again at NEEM during the exceptional heat of July 2012. With additional warming, surface melt might become more common in the future.
546 citations
Authors
Showing all 28447 results
Name | H-index | Papers | Citations |
---|---|---|---|
Robert Stone | 160 | 1756 | 167901 |
Menachem Elimelech | 157 | 547 | 95285 |
Thomas J. Smith | 140 | 1775 | 113919 |
Harold A. Mooney | 135 | 450 | 100404 |
Jerry M. Melillo | 134 | 383 | 68894 |
John F. Thompson | 132 | 1420 | 95894 |
Thomas N. Williams | 132 | 1145 | 95109 |
Peter M. Vitousek | 127 | 352 | 96184 |
Steven W. Running | 126 | 355 | 76265 |
Vincenzo Di Marzo | 126 | 659 | 60240 |
J. D. Hansen | 122 | 975 | 76198 |
Peter Molnar | 118 | 446 | 53480 |
Michael R. Hoffmann | 109 | 500 | 63474 |
David Pollard | 108 | 438 | 39550 |
David J. Hill | 107 | 1364 | 57746 |