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Institution

Oregon State University

EducationCorvallis, Oregon, United States
About: Oregon State University is a education organization based out in Corvallis, Oregon, United States. It is known for research contribution in the topics: Population & Climate change. The organization has 28192 authors who have published 64044 publications receiving 2634108 citations. The organization is also known as: Oregon Agricultural College & OSU.


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Journal ArticleDOI
07 May 2015-Nature
TL;DR: This work shows that the waves begin as sinusoidal disturbances rather than arising from sharp hydraulic phenomena, and reveals the existence of >200-metre-high breaking internal waves in the region of generation that give rise to turbulence levels >10,000 times that in the open ocean.
Abstract: Internal oceanic waves are subsurface gravity waves that can be enormous and travel thousands of kilometres before breaking but they are difficult to study; here observations of such waves in the South China Sea reveal their formation mechanism, extreme turbulence, relationship to the Kuroshio Current and energy budget. Internal waves are the underwater version of more familiar surface waves. They can be enormous and travel thousands of kilometres before breaking. The South China Sea is known to be home to the largest internal waves in the world's oceans, but their size, generation mechanisms and role in the regional energy budget are unknown. Matthew Alford and colleagues now present the results from the IWISE observational campaign and reveal that internal waves more than 200 metres high break in the South China Sea and create turbulence that is orders of magnitude larger than in the open ocean, and that wave formation is influenced by the Kuroshio current. These results now allow for a complete energy budget of the South China Sea, and for a more accurate incorporation of internal waves into climate models. Internal gravity waves, the subsurface analogue of the familiar surface gravity waves that break on beaches, are ubiquitous in the ocean. Because of their strong vertical and horizontal currents, and the turbulent mixing caused by their breaking, they affect a panoply of ocean processes, such as the supply of nutrients for photosynthesis1, sediment and pollutant transport2 and acoustic transmission3; they also pose hazards for man-made structures in the ocean4. Generated primarily by the wind and the tides, internal waves can travel thousands of kilometres from their sources before breaking5, making it challenging to observe them and to include them in numerical climate models, which are sensitive to their effects6,7. For over a decade, studies8,9,10,11 have targeted the South China Sea, where the oceans’ most powerful known internal waves are generated in the Luzon Strait and steepen dramatically as they propagate west. Confusion has persisted regarding their mechanism of generation, variability and energy budget, however, owing to the lack of in situ data from the Luzon Strait, where extreme flow conditions make measurements difficult. Here we use new observations and numerical models to (1) show that the waves begin as sinusoidal disturbances rather than arising from sharp hydraulic phenomena, (2) reveal the existence of >200-metre-high breaking internal waves in the region of generation that give rise to turbulence levels >10,000 times that in the open ocean, (3) determine that the Kuroshio western boundary current noticeably refracts the internal wave field emanating from the Luzon Strait, and (4) demonstrate a factor-of-two agreement between modelled and observed energy fluxes, which allows us to produce an observationally supported energy budget of the region. Together, these findings give a cradle-to-grave picture of internal waves on a basin scale, which will support further improvements of their representation in numerical climate predictions.

432 citations

Journal ArticleDOI
TL;DR: In this article, the authors search for an isotropic stochastic GWB in the 12.5-yr pulsar-timing data set collected by the North American Nanohertz Observatory for Gravitational Waves.
Abstract: We search for an isotropic stochastic gravitational-wave background (GWB) in the 12.5 yr pulsar-timing data set collected by the North American Nanohertz Observatory for Gravitational Waves. Our analysis finds strong evidence of a stochastic process, modeled as a power law, with common amplitude and spectral slope across pulsars. Under our fiducial model, the Bayesian posterior of the amplitude for an f −2/3 power-law spectrum, expressed as the characteristic GW strain, has median 1.92 × 10−15 and 5%–95% quantiles of 1.37–2.67 × 10−15 at a reference frequency of the Bayes factor in favor of the common-spectrum process versus independent red-noise processes in each pulsar exceeds 10,000. However, we find no statistically significant evidence that this process has quadrupolar spatial correlations, which we would consider necessary to claim a GWB detection consistent with general relativity. We find that the process has neither monopolar nor dipolar correlations, which may arise from, for example, reference clock or solar system ephemeris systematics, respectively. The amplitude posterior has significant support above previously reported upper limits; we explain this in terms of the Bayesian priors assumed for intrinsic pulsar red noise. We examine potential implications for the supermassive black hole binary population under the hypothesis that the signal is indeed astrophysical in nature.

431 citations

Journal Article
TL;DR: There were no relative improvements of cognitive function among healthy seniors in the yoga or exercise group compared to the wait-list control group and no effects from either of the active interventions on any of the cognitive and alertness outcome measures.
Abstract: Context—There are potential benefits of mind-body techniques on cognitive function because the techniques involve an active attentional or mindfulness component, but this has not been fully explored. Objective—To determine the effect of yoga on cognitive function, fatigue, mood, and quality of life in seniors. Design—Randomized, controlled trial comparing yoga, exercise, and wait-list control groups. Participants—One hundred thirty-five generally healthy men and women aged 65–85 years. Intervention—Participants were randomized to 6 months of Hatha yoga class, walking exercise class, or wait-list control. Subjects assigned to classes also were asked to practice at home. Main Outcome Measures—Outcome assessments performed at baseline and after the 6-month period included a battery of cognitive measures focused on attention and alertness, the primary outcome measures being performance on the Stroop Test and a quantitative electroencephalogram (EEC) measure of alertness; SF-36 health-related quality of life; Profile of Mood States; MultiDimensional Fatigue Inventory; and physical measures related to the interventions. Results—One hundred thirty-five subjects were recruited and randomized. Seventeen subjects did not finish the 6-month intervention. There were no effects from either of the active interventions on any of the cognitive and alertness outcome measures. The yoga intervention produced improvements in physical measures (eg, timed 1-legged standing, forward flexibility) as well as a number of qualityof-life measures related to sense of well-being and energy and fatigue compared to controls. Conclusions—There were no relative improvements of cognitive function among healthy seniors in the yoga or exercise group compared to the wait-list control group. Those in the yoga group showed significant improvement in quality-of-life and physical measures compared to exercise and wait-list control groups.

430 citations

Journal ArticleDOI
TL;DR: This review brings together metabolic and molecular studies that help explain n-3 (omega-3) polyunsaturated fatty acid regulation of hepatic gene transcription by revealing unique mechanisms by which specific polyuns saturated fatty acids control peroxisome proliferator activated receptor α, sterol regulatory element binding protein-1 and carbohydrate regulatory elementbinding protein/Max-like factor X function.
Abstract: Polyunsaturated fatty acids (PUFA) of the n-6 and n-3 families inhibit transcription of a number of hepatic lipogenic and glycolytic genes, e.g. fatty acid synthase. In contrast, saturated and monounsaturated fatty acids exert no suppressive action on lipogenic gene expression. The unique PUFA regulation of gene expression extends beyond the liver to include genes such as adipocyte glucose transporter-4, lymphocyte stearoyl-CoA desaturase 2, and interleukins. Some of the transcriptional effects of PUFA appear to be mediated by eicosanoids, but PUFA suppression of lipogenic and glycolytic genes is independent of eicosanoid synthesis and appears to involve a nuclear mechanism directly modified by PUFA. With the recent cloning of a fatty acid-activated nuclear factor termed peroxisome-proliferator-activated receptor (PPAR) has come the suggestion that PPAR may be the PUFA response factor. This review, however, presents several lines of evidence that indicate that the PPAR and n-6 and n-3 PUFA regulation of lipogenic and glycolytic gene transcription involve separate and independent mechanisms. Thus PPAR appears not to be the PUFA response factor.

430 citations

Journal ArticleDOI
Betsy A. Read1, Jessica Kegel2, Mary J. Klute3, Alan Kuo4, Stephane C. Lefebvre5, Florian Maumus6, Christoph Mayer7, John P. Miller8, Adam Monier9, Asaf Salamov4, Jeremy R. Young10, María Aguilar3, Jean-Michel Claverie11, Stephan Frickenhaus2, Karina Gonzalez12, Emily K. Herman3, Yao-Cheng Lin13, Johnathan A. Napier14, Hiroyuki Ogata11, Analissa F. Sarno1, Jeremy Shmutz4, Declan C. Schroeder, Colomban de Vargas15, Frédéric Verret16, Peter von Dassow17, Klaus Valentin2, Yves Van de Peer13, Glen L. Wheeler18, Joel B. Dacks3, Charles F. Delwiche8, Sonya T. Dyhrman2, Sonya T. Dyhrman19, Sonya T. Dyhrman20, Gernot Glöckner21, Uwe John2, Thomas A. Richards22, Alexandra Z. Worden9, Xiaoyu Zhang1, Igor V. Grigoriev23, Andrew E. Allen24, Kay D. Bidle11, Kay D. Bidle25, Mark Borodovsky11, Chris Bowler15, Colin Brownlee1, Colin Brownlee26, J. Mark Cock12, Marek Eliáš27, Vadim N. Gladyshev28, Marco Groth1, Chittibabu Guda, Ahmad R. Hadaegh29, M. D. Iglesias-Rodriguez30, Jerry Jenkins16, Bethan M. Jones31, Tracy Lawson32, Florian Leese33, Erika Lindquist34, Alexei Lobanov27, Alexandre Lomsadze25, Shehre-Banoo Malik35, Mary E. Marsh36, Luke C. M. Mackinder15, Thomas Mock11, Bernd Mueller-Roeber37, António Pagarete38, Micaela S. Parker39, Ian Probert11, Hadi Quesneville15, Christine A. Raines31, Stefan A. Rensing15, Stefan A. Rensing2, Diego Mauricio Riaño-Pachón40, Sophie Richier40, Sophie Richier41, Sebastian D. Rokitta42, Yoshihiro Shiraiwa43, Darren M. Soanes42, Mark van der Giezen39, Thomas M. Wahlund41, Bryony A. P. Williams44, Willie Wilson43, Gordon Wolfe41, Louie L. Wurch42, Louie L. Wurch40 
11 Jul 2013-Nature
TL;DR: Comparisons across strains demonstrate that E. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires, and reveals a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome.
Abstract: Coccolithophores have influenced the global climate for over 200 million years(1). These marine phytoplankton can account for 20 per cent of total carbon fixation in some systems(2). They form blooms that can occupy hundreds of thousands of square kilometres and are distinguished by their elegantly sculpted calcium carbonate exoskeletons (coccoliths), rendering them visible from space(3). Although coccolithophores export carbon in the form of organic matter and calcite to the sea floor, they also release CO2 in the calcification process. Hence, they have a complex influence on the carbon cycle, driving either CO2 production or uptake, sequestration and export to the deep ocean(4). Here we report the first haptophyte reference genome, from the coccolithophore Emiliania huxleyi strain CCMP1516, and sequences from 13 additional isolates. Our analyses reveal a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome. Comparisons across strains demonstrate that E. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires. Genome variability within this species complex seems to underpin its capacity both to thrive in habitats ranging from the equator to the subarctic and to form large-scale episodic blooms under a wide variety of environmental conditions.

430 citations


Authors

Showing all 28447 results

NameH-indexPapersCitations
Robert Stone1601756167901
Menachem Elimelech15754795285
Thomas J. Smith1401775113919
Harold A. Mooney135450100404
Jerry M. Melillo13438368894
John F. Thompson132142095894
Thomas N. Williams132114595109
Peter M. Vitousek12735296184
Steven W. Running12635576265
Vincenzo Di Marzo12665960240
J. D. Hansen12297576198
Peter Molnar11844653480
Michael R. Hoffmann10950063474
David Pollard10843839550
David J. Hill107136457746
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Performance
Metrics
No. of papers from the Institution in previous years
YearPapers
2023105
2022375
20213,156
20203,109
20193,017
20182,987