Oregon State University

About: Oregon State University is a education organization based out in Corvallis, Oregon, United States. It is known for research contribution in the topics: Population & Climate change. The organization has 28192 authors who have published 64044 publications receiving 2634108 citations. The organization is also known as: Oregon Agricultural College & OSU.

Seismic and geochemical evidence for large-scale mantle upwelling beneath the eastern Atlantic and western and central Europe

Abstract: Seismic tomography and the isotope geochemistry of Cenozoic volcanic rocks suggest the existence of a large, sheet-like region of upwelling in the upper mantle which extends from the eastern Atlantic Ocean to central Europe and the western Mediterranean. A belt of extension and rifting in the latter two areas appears to lie above the intersection of the centre of the upwelling region with the base of the lithosphere. Lead, strontium and neodymium isotope data for all three regions converge on a restricted composition, inferred to be that of the upwelling mantle.

Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

Abstract: Community-level data, the type generated by an increasing number of metabarcoding studies, is often graphed as stacked bar charts or pie graphs that use color to represent taxa. These graph types do not convey the hierarchical structure of taxonomic classifications and are limited by the use of color for categories. As an alternative, we developed metacoder, an R package for easily parsing, manipulating, and graphing publication-ready plots of hierarchical data. Metacoder includes a dynamic and flexible function that can parse most text-based formats that contain taxonomic classifications, taxon names, taxon identifiers, or sequence identifiers. Metacoder can then subset, sample, and order this parsed data using a set of intuitive functions that take into account the hierarchical nature of the data. Finally, an extremely flexible plotting function enables quantitative representation of up to 4 arbitrary statistics simultaneously in a tree format by mapping statistics to the color and size of tree nodes and edges. Metacoder also allows exploration of barcode primer bias by integrating functions to run digital PCR. Although it has been designed for data from metabarcoding research, metacoder can easily be applied to any data that has a hierarchical component such as gene ontology or geographic location data. Our package complements currently available tools for community analysis and is provided open source with an extensive online user manual.

Climate Change Effects on Vegetation Distribution and Carbon Budget in the United States

Abstract: The Kyoto protocol has focused the attention of the public and policymarkers on the earth’s carbon (C) budget. Previous estimates of the impacts of vegetation change have been limited to equilibrium “snapshots” that could not capture nonlinear or threshold effects along the trajectory of change. New models have been designed to complement equilibrium models and simulate vegetation succession through time while estimating variability in the C budget and responses to episodic events such as drought and fire. In addition, a plethora of future climate scenarios has been used to produce a bewildering variety of simulated ecological responses. Our objectives were to use an equilibrium model (Mapped Atmosphere‐Plant‐ Soil system, or MAPSS) and a dynamic model (MC1) to (a) simulate changes in potential equilibrium vegetation distribution under historical conditions and across a wide gradient of future temperature changes to look for consistencies and trends among the many future scenarios, (b) simulate time-dependent changes in vegetation distribution and its associated C pools to illustrate the possible trajectories of vegetation change near the high and low ends of the temperature gradient, and (c) analyze the extent of the US area supporting a negative C balance. Both models agree that a moderate increase in temperature produces an increase in vegetation density and carbon sequestration across most of the US with small changes in vegetation types. Large increases in temperature cause losses of C with large shifts in vegetation types. In the western states, particularly southern California, precipitation and thus vegetation density increase and forests expand under all but the hottest scenarios. In the eastern US, particularly the Southeast, forests expand under the more moderate scenarios but decline under more severe climate scenarios, with catastrophic fires potentially causing rapid vegetation conversions from forest to savanna. Both models show that there is a potential for either positive or negative feedbacks to the atmosphere depending on the level of warming in the climate change scenarios.

Theory and Application of Directional Distance Functions

Abstract: In 1957 Farrell demonstrated how cost inefficiency could be decomposed into two mutually exclusive and exhaustive components: technical and allocative inefficiency. This result is consequence of the fact that—as shown by Shephard—the cost function and the input distance function (the reciprocal of Farrell's technical efficiency measure) are ‘dual’ to each other. Similarly, the revenue function and the output distance function are dual providing the basis for the decomposition of revenue inefficiency into technical and allocative components (see for example, Fare, Grosskopf and Lovell (1994)). Here we extend those results to include the directional distance function and its dual, the profit function. This provides the basis for defining and decomposing profit efficiency. As we show, the output and input distance functions (reciprocals of Farrell efficiency measures) are special cases of the directional distance function. We also show how to use the directional distance function as a tool for measuring capacity utilization using DEA type techniques.