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Showing papers by "Pacific Northwest National Laboratory published in 2006"


Journal ArticleDOI
TL;DR: Nanowires produced by the oxygenic phototrophic cyanobacterium Synechocystis PCC6803 and the thermophilic, fermentative bacterium Pelotomaculum thermopropionicum reveal that electrically conductive appendages are not exclusive to dissimilatory metal-reducing bacteria and may, in fact, represent a common bacterial strategy for efficient electron transfer and energy distribution.
Abstract: Shewanella oneidensis MR-1 produced electrically conductive pilus-like appendages called bacterial nanowires in direct response to electron-acceptor limitation. Mutants deficient in genes for c-type decaheme cytochromes MtrC and OmcA, and those that lacked a functional Type II secretion pathway displayed nanowires that were poorly conductive. These mutants were also deficient in their ability to reduce hydrous ferric oxide and in their ability to generate current in a microbial fuel cell. Nanowires produced by the oxygenic phototrophic cyanobacterium Synechocystis PCC6803 and the thermophilic, fermentative bacterium Pelotomaculum thermopropionicum reveal that electrically conductive appendages are not exclusive to dissimilatory metal-reducing bacteria and may, in fact, represent a common bacterial strategy for efficient electron transfer and energy distribution.

1,666 citations


Journal ArticleDOI
01 Nov 2006-JOM
TL;DR: In the past decade, natural fiber composites with thermoplastic and thermoset matrices have been embraced by European car manufacturers and suppliers for door panels, seat backs, headliners, package trays, dashboards, and interior parts as mentioned in this paper.
Abstract: In the past decade, natural-fiber composites with thermoplastic and thermoset matrices have been embraced by European car manufacturers and suppliers for door panels, seat backs, headliners, package trays, dashboards, and interior parts. Natural fibers such as kenaf, hemp, flax, jute, and sisal offer such benefits as reductions in weight, cost, and CO2, less reliance on foreign oil sources, and recyclability. However, several major technical considerations must be addressed before the engineering, scientific, and commercial communities gain the confidence to enable wide-scale acceptance, particularly in exterior parts where a Class A surface finish is required. Challenges include the homogenization of the fiber's properties and a full understanding of the degree of polymerization and crystallization, adhesion between the fiber and matrix, moisture repellence, and flame-retardant properties, to name but a few.

1,272 citations


Journal ArticleDOI
TL;DR: In this article, the authors assess the relative importance of either biotic or abiotic oxidation of biomass-derived black carbon (BC) and characterize the surface properties and charge characteristics of oxidized BC.

1,071 citations


Journal ArticleDOI
TL;DR: In this paper, a fully coupled meteorology-chemistry-aerosol model is used to simulate the urban-to-regional-scale variations in trace gases, particulates, and aerosol direct radiative forcing in the vicinity of Houston over a 5 day summer period.
Abstract: [1] A new fully coupled meteorology-chemistry-aerosol model is used to simulate the urban- to regional-scale variations in trace gases, particulates, and aerosol direct radiative forcing in the vicinity of Houston over a 5 day summer period. Model performance is evaluated using a wide range of meteorological, chemistry, and particulate measurements obtained during the 2000 Texas Air Quality Study. The predicted trace gas and particulate distributions were qualitatively similar to the surface and aircraft measurements with considerable spatial variations resulting from urban, power plant, and industrial sources of primary pollutants. Sulfate, organic carbon, and other inorganics were the largest constituents of the predicted particulates. The predicted shortwave radiation was 30 to 40 W m−2 closer to the observations when the aerosol optical properties were incorporated into the shortwave radiation scheme; however, the predicted hourly aerosol radiative forcing was still underestimated by 10 to 50 W m−2. The predicted aerosol radiative forcing was larger over Houston and the industrial ship channel than over the rural areas, consistent with surface measurements. The differences between the observed and simulated aerosol radiative forcing resulted from transport errors, relative humidity errors in the upper convective boundary layer that affect aerosol water content, secondary organic aerosols that were not yet included in the model, and uncertainties in the primary particulate emission rates. The current model was run in a predictive mode and demonstrates the challenges of accurately simulating all of the meteorological, chemical, and aerosol parameters over urban to regional scales that can affect aerosol radiative forcing.

871 citations


Journal ArticleDOI
TL;DR: The magnetic separation, luminescent detection, and controlled release of drugs were demonstrated using the uniform mesoporous silica spheres embedded with monodisperse nanocrystals.
Abstract: We synthesized uniform pore-sized mesoporous silica spheres embedded with magnetite nanocrystal and quantum dots. The magnetic separation, luminescent detection, and controlled release of drugs were demonstrated using the uniform mesoporous silica spheres embedded with monodisperse nanocrystals.

844 citations


Journal ArticleDOI
TL;DR: Exposure to SiO(2) nanoparticles results in a dose-dependent cytotoxicity in cultural human bronchoalveolar carcinoma-derived cells that is closely correlated to increased oxidative stress.

812 citations


Journal ArticleDOI
TL;DR: Recently reported approaches to improve the enzyme stability in various nanostructures such as nanoparticles, nanofibers, mesoporous materials, and single enzyme nanoparticles (SENs) are reviewed.

796 citations


Journal ArticleDOI
TL;DR: In this paper, a harmonized estimate for the aerosol di- rect radiative forcing (RF) under all-sky conditions is derived from the difference of two model simulations with prescribed aerosol emissions, one for present-day and one for pre-industrial conditions.
Abstract: Nine different global models with detailed aerosol modules have independently produced instantaneous direct radiative forcing due to anthropogenic aerosols. The an- thropogenic impact is derived from the difference of two model simulations with prescribed aerosol emissions, one for present-day and one for pre-industrial conditions. The differ- ence in the solar energy budget at the top of the atmosphere (ToA) yields a new harmonized estimate for the aerosol di- rect radiative forcing (RF) under all-sky conditions. On a global annual basis RF is 0.22Wm 2 , ranging from +0.04 to 0.41Wm 2 , with a standard deviation of ±0.16Wm 2 . Anthropogenic nitrate and dust are not included in this esti- mate. No model shows a significant positive all-sky RF. The corresponding clear-sky RF is 0.68Wm 2 . The cloud-sky RF was derived based on all-sky and clear-sky RF and mod- elled cloud cover. It was significantly different from zero and ranged between 0.16 and +0.34Wm 2 . A sensitivity anal- ysis shows that the total aerosol RF is influenced by consid- erable diversity in simulated residence times, mass extinction coefficients and most importantly forcing efficiencies (forc- ing per unit optical depth). The clear-sky forcing efficiency (forcing per unit optical depth) has diversity comparable to that for the all-sky/ clear-sky forcing ratio. While the di- versity in clear-sky forcing efficiency is impacted by factors such as aerosol absorption, size, and surface albedo, we can show that the all-sky/clear-sky forcing ratio is important be- cause all-sky forcing estimates require proper representation of cloud fields and the correct relative altitude placement be- tween absorbing aerosol and clouds. The analysis of the sul- phate RF shows that long sulphate residence times are com- pensated by low mass extinction coefficients and vice versa. This is explained by more sulphate particle humidity growth and thus higher extinction in those models where short-lived sulphate is present at lower altitude and vice versa. Solar atmospheric forcing within the atmospheric column is esti- mated at +0.82±0.17Wm 2 . The local annual average max- ima of atmospheric forcing exceed +5Wm 2 confirming the regional character of aerosol impacts on climate. The annual average surface forcing is 1.02±0.23Wm 2 . With the cur- rent uncertainties in the modelling of the radiative forcing due to the direct aerosol effect we show here that an estimate from one model is not sufficient but a combination of several model estimates is necessary to provide a mean and to ex- plore the uncertainty.

639 citations


Journal ArticleDOI
TL;DR: The R&D agenda for visual analytics addresses technical needs for each of these focus areas, as well as recommendations for speeding the movement of promising technologies into practice.
Abstract: Researchers have made significant progress in disciplines such as scientific and information visualization, statistically based exploratory and confirmatory analysis, data and knowledge representations, and perceptual and cognitive sciences. Although some research is being done in this area, the pace at which new technologies and technical talents are becoming available is far too slow to meet the urgent need. National Visualization and Analytics Center's goal is to advance the state of the science to enable analysts to detect the expected and discover the unexpected from massive and dynamic information streams and databases consisting of data of multiple types and from multiple sources, even though the data are often conflicting and incomplete. Visual analytics is a multidisciplinary field that includes the following focus areas: (i) analytical reasoning techniques, (ii) visual representations and interaction techniques, (iii) data representations and transformations, (iv) techniques to support production, presentation, and dissemination of analytical results. The R&D agenda for visual analytics addresses technical needs for each of these focus areas, as well as recommendations for speeding the movement of promising technologies into practice. This article provides only the concise summary of the R&D agenda. We encourage reading, discussion, and debate as well as active innovation toward the agenda for visual analysis.

549 citations


Journal ArticleDOI
TL;DR: It appears to be reasonable to expect that progress in nanostuctured biocatalysts will play a critical role in overcoming the major obstacles in the development of powerful biofuel cells.

542 citations


Journal ArticleDOI
TL;DR: The cytotoxicity and oxidative stress caused by 20-nm cerium oxide (CeO2) nanoparticles in cultured human lung cancer cells was investigated and it was concluded that free radicals generated by exposure to 3.5 to 23.3 μg/ml CeO2 nanoparticles produce significant oxidative stress in the cells.
Abstract: With the fast development of nanotechnology, the nanomaterials start to cause people's attention for potential toxic effect. In this paper, the cytotoxicity and oxidative stress caused by 20-nm cerium oxide (CeO2) nanoparticles in cultured human lung cancer cells was investigated. The sulforhodamine B method was employed to assess cell viability after exposure to 3.5, 10.5, and 23.3 microg/ml of CeO2 nanoparticles for 24, 48, and 72 h. Cell viability decreased significantly as a function of nanoparticle dose and exposure time. Indicators of oxidative stress and cytotoxicity, including total reactive oxygen species, glutathione, malondialdehyde, alpha-tocopherol, and lactate dehydrogenase, were quantitatively assessed. It is concluded from the results that free radicals generated by exposure to 3.5 to 23.3 microg/ml CeO2 nanoparticles produce significant oxidative stress in the cells, as reflected by reduced glutathione and alpha-tocopherol levels; the toxic effects of CeO2 nanoparticles are dose dependent and time dependent; elevated oxidative stress increases the production of malondialdehyde and lactate dehydrogenase, which are indicators of lipid peroxidation and cell membrane damage, respectively.

Journal ArticleDOI
TL;DR: The developed PDDA/AChE/PDDA/CNT/GC biosensor integrated into a flow injection system was used to monitor organophosphate pesticides and nerve agents, such as paraoxon and had excellent operational lifetime stability with no decrease in the activity of enzymes for more than 20 repeated measurements over a 1-week period.
Abstract: A highly sensitive flow injection amperometric biosensor for organophosphate pesticides and nerve agents based on self-assembled acetylcholinesterase (AChE) on a carbon nanotube (CNT)-modified glassy carbon (GC) electrode is described. AChE is immobilized on the negatively charged CNT surface by alternatively assembling a cationic poly(diallyldimethylammonium chloride) (PDDA) layer and an AChE layer. Transmission electron microscopy images confirm the formation of layer-by-layer nanostructures on carboxyl-functionalized CNTs. Fourier transform infrared reflectance spectrum indicates the AChE was immobilized successfully on the CNT/PDDA surface. The unique sandwich-like structure (PDDA/AChE/PDDA) on the CNT surface formed by self-assembling provides a favorable microenvironment to keep the bioactivity of AChE. The electrocatalytic activity of CNT leads to a greatly improved electrochemical detection of the enzymatically generated thiocholine product, including a low oxidation overvoltage (+150 mV), higher sensitivity, and stability. The developed PDDA/AChE/PDDA/CNT/GC biosensor integrated into a flow injection system was used to monitor organophosphate pesticides and nerve agents, such as paraoxon. The sensor performance, including inhibition time and regeneration conditions, was optimized with respect to operating conditions. Under the optimal conditions, the biosensor was used to measure as low as 0.4 pM paraoxon with a 6-min inhibition time. The biosensor had excellent operational lifetime stability with no decrease in the activity of enzymes for more than 20 repeated measurements over a 1-week period. The developed biosensor system is an ideal tool for online monitoring of organophosphate pesticides and nerve agents.

Journal ArticleDOI
TL;DR: The proposed extension of the sequential kriging optimization method, surrogate systems are exploited to reduce the total evaluation cost and manifests sensible search patterns, robust performance, and appreciable reduction in total evaluation costs as compared to the original method.
Abstract: When cost per evaluation on a system of interest is high, surrogate systems can provide cheaper but lower-fidelity information. In the proposed extension of the sequential kriging optimization method, surrogate systems are exploited to reduce the total evaluation cost. The method utilizes data on all systems to build a kriging metamodel that provides a global prediction of the objective function and a measure of prediction uncertainty. The location and fidelity level of the next evaluation are selected by maximizing an augmented expected improvement function, which is connected with the evaluation costs. The proposed method was applied to test functions from the literature and a metal-forming process design problem via finite element simulations. The method manifests sensible search patterns, robust performance, and appreciable reduction in total evaluation cost as compared to the original method.

Journal ArticleDOI
TL;DR: In this paper, the authors studied the possible correlations between defects and photoluminescence spectra in ZnO nanoparticles of sizes ranging from 43 nm to 73 nm in diameter.
Abstract: We studied the possible correlations between defects and photoluminescence spectra in ZnO nanoparticles of sizes ranging from 43 nm to 73 nm in diameter. The defects and impurity contents were characterized by Fourier-transform infrared (FTIR) spectroscopy. The results show fewer carboxylate and hydroxyl impurities for particles of larger sizes. No significant variation in oxygen vacancy content was found among samples. Annealing in vacuum at 300 °C significantly reduces the carboxylate and hydroxyl impurities in the samples. The total luminescence intensity (UV + visible) increases as the particle size grows for both the unannealed and annealed samples. This suggests that both types of luminescence are subject to non-radiative quenching by near surface defect centers, possibly carboxylate and hydroxyl impurities. There may be quenching due to intrinsic lattice defects too. It is found that annealing in vacuum enhances the visible luminescence both absolutely and relative to the UV exciton luminescence. In addition to the 2.5 eV green luminescence peak, a peak centered at 2.8 eV can also be resolved, espeically for the 43 nm sample. (© 2006 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)

Journal ArticleDOI
TL;DR: The authors analyze the cell processor's communication network, using a series of benchmarks involving various DMA traffic patterns and synchronization protocols to illuminate this important point in multicore processor design.
Abstract: Multicore designs promise various power-performance and area-performance benefits. But inadequate design of the on-chip communication network can deprive applications of these benefits. To illuminate this important point in multicore processor design, the authors analyze the cell processor's communication network, using a series of benchmarks involving various DMA traffic patterns and synchronization protocols

Journal ArticleDOI
TL;DR: In this paper, the authors show that flood basalts are a potentially important host medium for geologic sequestration of anthropogenic CO2 and demonstrate that they can provide significant additional CO2 storage capacity and additional geologic storage options in certain regions where more conventional storage options are limited.
Abstract: [1] Flood basalts are a potentially important host medium for geologic sequestration of anthropogenic CO2. Most lava flows have flow tops that are porous and permeable and have enormous capacity for storage of CO2. Interbedded sediment layers and dense low-permeability basalt rock overlying sequential flows may act as effective seals allowing time for mineralization reactions to occur. Laboratory experiments confirm relatively rapid chemical reaction of CO2-saturated pore water with basalts to form stable carbonate minerals. Calculations suggest a sufficiently short time frame for onset of carbonate precipitation after CO2 injection that verification of in situ mineralization rates appears feasible in field pilot studies. If proven viable, major flood basalts in the United States and India would provide significant additional CO2 storage capacity and additional geologic sequestration options in certain regions where more conventional storage options are limited.

Journal ArticleDOI
TL;DR: Central tendency, linear regression, locally weighted regression, and quantile techniques were investigated for normalization of peptide abundance measurements obtained from high-throughput liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometry (LC-FTICR MS).
Abstract: Central tendency, linear regression, locally weighted regression, and quantile techniques were investigated for normalization of peptide abundance measurements obtained from high-throughput liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometry (LC−FTICR MS). Arbitrary abundances of peptides were obtained from three sample sets, including a standard protein sample, two Deinococcus radiodurans samples taken from different growth phases, and two mouse striatum samples from control and methamphetamine-stressed mice (strain C57BL/6). The selected normalization techniques were evaluated in both the absence and presence of biological variability by estimating extraneous variability prior to and following normalization. Prior to normalization, replicate runs from each sample set were observed to be statistically different, while following normalization replicate runs were no longer statistically different. Although all techniques reduced systematic bias to some degree, assigned ranks a...

Journal ArticleDOI
TL;DR: The application of automatic digital image processing techniques on sky images is a useful method to complement, or even replace, traditional human observations of sky cover and, potentially, cloud type.
Abstract: A discussion is presented of daytime sky imaging and techniques that may be applied to the analysis of full-color sky images to infer cloud macrophysical properties. Descriptions of two different types of skyimaging systems developed by the authors are presented, one of which has been developed into a commercially available instrument. Retrievals of fractional sky cover from automated processing methods are compared to human retrievals, both from direct observations and visual analyses of sky images. Although some uncertainty exists in fractional sky cover retrievals from sky images, this uncertainty is no greater than that attached to human observations for the commercially available sky-imager retrievals. Thus, the application of automatic digital image processing techniques on sky images is a useful method to complement, or even replace, traditional human observations of sky cover and, potentially, cloud type. Additionally, the possibilities for inferring other cloud parameters such as cloud brokenness and solar obstruction further enhance the usefulness of sky imagers.

Journal ArticleDOI
01 May 2006
TL;DR: Compatibility of GA with MPI enables the programmer to take advatage of the existing MPI software/libraries when available and appropriate, and demonstrates the attractiveness of using higher level abstractions to write parallel code.
Abstract: This paper describes capabilities, evolution, performance, and applications of the Global Arrays (GA) toolkit. GA was created to provide application programmers with an inteface that allows them to distribute data while maintaining the type of global index space and programming syntax similar to that available when programming on a single processor. The goal of GA is to free the programmer from the low level management of communication and allow them to deal with their problems at the level at which they were originally formulated. At the same time, compatibility of GA with MPI enables the programmer to take advatage of the existing MPI software/libraries when available and appropriate. The variety of applications that have been implemented using Global Arrays attests to the attractiveness of using higher level abstractions to write parallel code.

Journal ArticleDOI
TL;DR: It is shown that c-type cytochromes of a dissimilatory metal-reducing bacterium, Shewanella oneidensis MR-1, are essential for the reduction of U(VI) and formation of extracelluar UO 2 nanoparticles and this is the first study to the authors' knowledge to directly localize the OM-associated cyto Chromes with EPS, which contains biogenic UO2 nanoparticles.
Abstract: Modern approaches for bioremediation of radionuclide contaminated environments are based on the ability of microorganisms to effectively catalyze changes in the oxidation states of metals that in turn influence their solubility. Although microbial metal reduction has been identified as an effective means for immobilizing highly-soluble uranium(VI) complexes in situ, the biomolecular mechanisms of U(VI) reduction are not well understood. Here, we show that c-type cytochromes of a dissimilatory metal-reducing bacterium, Shewanella oneidensis MR-1, are essential for the reduction of U(VI) and formation of extracelluar UO 2 nanoparticles. In particular, the outer membrane (OM) decaheme cytochrome MtrC (metal reduction), previously implicated in Mn(IV) and Fe(III) reduction, directly transferred electrons to U(VI). Additionally, deletions of mtrC and/or omcA significantly affected the in vivo U(VI) reduction rate relative to wild-type MR-1. Similar to the wild-type, the mutants accumulated UO 2 nanoparticles extracellularly to high densities in association with an extracellular polymeric substance (EPS). In wild-type cells, this UO 2-EPS matrix exhibited glycocalyx-like properties and contained multiple elements of the OM, polysaccharide, and heme-containing proteins. Using a novel combination of methods including synchrotron-based X-ray fluorescence microscopy and high-resolution immune-electron microscopy, we demonstrate a close association of the extracellular UO 2 nanoparticles with MtrC and OmcA (outer membrane cytochrome). This is the first study to our knowledge to directly localize the OM-associated cytochromes with EPS, which contains biogenic UO 2 nanoparticles. In the environment, such association of UO 2 nanoparticles with biopolymers may exert a strong influence on subsequent behavior including susceptibility to oxidation by O 2 or transport in soils and sediments.

Journal ArticleDOI
TL;DR: In this article, the long-term stability of anode-supported YSZ electrolyte SOFCs utilizing (La0.6Sr0.4)0.98Co0.2Fe0.8O3-? (LSCF-6428) cathodes was assessed.
Abstract: The long-term stability of anode-supported YSZ electrolyte SOFCs utilizing (La0.6Sr0.4)0.98Co0.2Fe0.8O3-? (LSCF-6428) cathodes was assessed. Samples tested for 500 hours at 750 C and 0.7V indicated ?50% degradation. While scanning electron microscopy (SEM) and energy dispersive x-ray (EDX) analysis indicated no obvious microstructural or chemical phenomena that could explain the high degradation, x-ray photon spectroscopy (XPS) revealed that enrichment of Sr at the cathode-electrolyte and cathode-current collector interfaces was at least partially responsible for the observed degradation.

Journal ArticleDOI
TL;DR: The results indicate that the wetland sediments contained organisms such as Geobacter sp.
Abstract: The potential for microbially-mediated anaerobic redox cycling of iron (Fe) was examined in a first-generation enrichment culture of freshwater wetland sediment microorganisms. MPN enumerations revealed the presence of significant populations of Fe(III)-reducing (ca. 108 cells mL-1) and Fe(II)-oxidizing, nitrate-reducing organisms (ca. 105 cells mL-1) in the sediment used to inoculate the enrichment cultures. Nitrate reduction commenced immediately following inoculation of acetate-containing (ca. 1 mM) medium with a small quantity (1% vol/vol) of wetland sediment, and resulted in the transient accumulation of NO2- and production of a mixture of end-products including NH4+. Fe(III) oxide (high surface area goethite) reduction took place - after NO3- was depleted and continued until all the acetate was utilized. Addition of NO3 after Fe(III) reduction ceased resulted in the immediate oxidation of Fe(II) coupled to reduction of + NO3-to NH4 . No significant NO2- accumulation was observed during nitrate-dependent Fe(II) oxidation. No Fe(II) oxidation occurred in pasteurized controls. Microbial community structure in the enrichment was monitored by DGGE analysis of PCR amplified 16s rDNA and RT-PCR amplified 16S rRNA, as well as by construction of 16S rDNA clone libraries for four different time points during the experiment. Strong similarities in dominant members of the microbial communitymore » were observed in the Fe(III) reduction and nitrate-dependent Fe(II) oxidation phases of the experiment, specifically the common presence of organisms closely related (= 95% sequence similarity) to the genera Geobacter and Dechloromonas. These results indicate that the wetland sediments contained organisms such as Geobacter sp. which are capable of both + dissimilatory Fe(III) reduction and oxidation of Fe(II) with reduction of NO3-reduction to NH4 . Our findings suggest that microbially-catalyzed nitrate-dependent Fe(II) oxidation has the potential to contribute to a dynamic anaerobic Fe redox cycle in freshwater sediments.« less

Journal ArticleDOI
TL;DR: The bone-seeking, α-particle-emitting radiopharmaceutical 223 RaCl 2 (half-life = 11.4 days) is under clinical development as a novel treatment for skeletal metastases from breast and prostate cancer.
Abstract: The bone-seeking, α-particle-emitting radiopharmaceutical Alpharadin, 223 RaCl 2 (half-life = 11.4 days), is under clinical development as a novel treatment for skeletal metastases from breast and prostate cancer. This article summarizes the current status of preclinical and clinical research on 223 RaCl 2 . Potential advantages of 223 Ra to that of external beam irradiation and registered β-emitting bone seekers are discussed. Published data of 223 Ra dosimetry in mice and a therapeutic study in a skeletal metastases model in nude rats have indicated significant therapeutic potential of bone-seeking α-emitters. This article provides short-term and long-term results from the first clinical single dosage trial. We also present data from a repeated dosage study of five consecutive injections of 50 kBq/kg body weight, once every 3rd week, or two injections of 125 kBq/kg body weight, 6 weeks apart. Furthermore, interim results are described for a randomized phase 2 trial involving 64 patients with hormone-refractory prostate cancer and painful skeletal metastases who received four monthly injections of 223 Ra or saline as an adjuvant to external beam radiotherapy. Lastly, we present preliminary dose estimates for 223 Ra in humans. Results indicate that repeated dosing is feasible and toxicity is low, and that opportunities are available for combined treatment strategies.

Journal ArticleDOI
TL;DR: This paper presents a review of the application of molecular dynamics simulation methods, including which polarizable potential models were used to describe interactions among species, to a variety of chemical and physical processes in solutions and at interfaces.
Abstract: In this paper, I present a review of the application of molecular dynamics simulation methods, including which polarizable potential models were used to describe interactions among species, to a variety of chemical and physical processes in solutions and at interfaces The main emphasis of the review is on recent advances in the understanding of ion solvation, molecular association, and molecular solvation at liquid interfaces The molecules discussed range from monovalent ions to molecular ions such as hydronium and nitrate ions The computed properties include potentials of mean force, surface potentials, surface tensions, and density profiles Comparisons with other simulation studies and experimental results were made and discussed in the review

Journal ArticleDOI
TL;DR: Self-assembly has profound consequences for the processive formation of polyubiquitin (poly-Ub) chains in ubiquitination reactions directed by the breast and ovarian cancer tumor susceptibility protein BRCA1.

Journal ArticleDOI
TL;DR: In this article, an ensemble of temperature and water vapor profiles created from radiosondes launched at the approximate Aqua overpass times, interpolated to the exact overpass time using time continuous ground-based profiles, adjusted to account for spatial gradients within the Advanced Microwave Sounding Unit (AMSU) footprints, and supplemented with limited cloud observations are also constructed.
Abstract: [1] The Atmospheric Infrared Sounder (AIRS) is the first of a new generation of advanced satellite-based atmospheric sounders with the capability of obtaining high–vertical resolution profiles of temperature and water vapor. The high-accuracy retrieval goals of AIRS (e.g., 1 K RMS in 1 km layers below 100 mbar for air temperature, 10% RMS in 2 km layers below 100 mbar for water vapor concentration), combined with the large temporal and spatial variability of the atmosphere and difficulties in making accurate measurements of the atmospheric state, necessitate careful and detailed validation using well-characterized ground-based sites. As part of ongoing AIRS Science Team efforts and a collaborative effort between the NASA Earth Observing System (EOS) project and the Department of Energy Atmospheric Radiation Measurement (ARM) program, data from various ARM and other observations are used to create best estimates of the atmospheric state at the Aqua overpass times. The resulting validation data set is an ensemble of temperature and water vapor profiles created from radiosondes launched at the approximate Aqua overpass times, interpolated to the exact overpass time using time continuous ground-based profiles, adjusted to account for spatial gradients within the Advanced Microwave Sounding Unit (AMSU) footprints, and supplemented with limited cloud observations. Estimates of the spectral surface infrared emissivity and local skin temperatures are also constructed. Relying on the developed ARM infrastructure and previous and ongoing characterization studies of the ARM measurements, the data set provides a good combination of statistics and accuracy which is essential for assessment of the advanced sounder products. Combined with the collocated AIRS observations, the products are being used to study observed minus calculated AIRS spectra, aimed at evaluation of the AIRS forward radiative transfer model, AIRS observed radiances, and temperature and water vapor profile retrievals. This paper provides an introduction to the ARM site best estimate validation products and characterizes the accuracy of the AIRS team version 4 atmospheric temperature and water vapor retrievals using the ARM products. The AIRS retrievals over tropical ocean are found to have very good accuracy for both temperature and water vapor, with RMS errors approaching the theoretical expectation for clear sky conditions, while retrievals over a midlatitude land site have poorer performance. The results demonstrate the importance of using specialized “truth” sites for accurate assessment of the advanced sounder performance and motivate the continued refinement of the AIRS science team retrieval algorithm, particularly for retrievals over land.


Journal ArticleDOI
TL;DR: In this article, the role of non-CO2 greenhouse gas forcing agents other than carbon dioxide using the MiniCAM integrated assessment model was examined and it was shown that the addition of non CO2 greenhouse gases abatement options significantly reduced mitigation costs in the first half of the century as compared to a case where only CO2 abatements are pursued.
Abstract: This paper examines the role of climate forcing agents other than carbon dioxide using the MiniCAM integrated assessment model. Non-CO2 greenhouse gases are particularly important through the middle of the 21st century. The addition of non-CO2 greenhouse gases abatement options significantly reduces mitigation costs in the first half of the century as compared to a case where only CO2 abatement options are pursued. Non-CO2 greenhouse gas forcing is dominated by methane and tropospheric ozone. Assumptions about the prevalence of methane recovery and local air pollution controls are a critical determinant of reference forcing from these two gases. While the influence of aerosols are small by the end of the century, there is a significant interaction between a climate policy and aerosol cooling near mid-century such that global-mean climate change to 2050 is practically unaffected by mitigation policy.

Journal ArticleDOI
TL;DR: Wang et al. as discussed by the authors used newly available data frorn extended weather stations and time period to reveal that much of China has experienced significant decreases in cloud cover over the last half of the Twentieth century.
Abstract: In this study, we used newly available data frorn extended weather stations and time period to reveal that much of China has experienced significant decreases in cloud cover over the last half of the Twentieth century. This conclusion is supported by analysis of the more reliably observed frequency of cloud-free sky and overcast sky. We estimated that the total cloud cover and low cloud cover in China have decreased 0.88% and 0.33% per decade, respectively, and cloud-free days have increased 0.60% and overcast days decreased 0.78% per decade from 1954-2001. Meanwhile, both solar radiation and pan evaporation have decreased in China, with'solar radiation decreasing 3.1 w/square m and pan evaporation decreasing 39 mm per decade. Combining these results with findings of previous studies, we speculated that increased air pollution may have produced a fog-like haze that reflected/absorbed radiation from the sun and resulted in less solar radiation reaching the surface, despite concurrent increasing trends in cloud-free sky over China.

Journal ArticleDOI
TL;DR: Kinetics measurements demonstrate a direct correlation between the oxidative quenching of ferromagnetism and the diffusion and oxidation of interstitial zinc and unambiguously reveal this ferromaggnetism to be dependent upon charge carriers.
Abstract: In only a few cases have the key factors controlling long-range magnetic ordering in diluted magnetic semiconductors (DMSs) been unambiguously identified. In Ga1� xMnxAs, the identification and variation of critical experimental parameters has culminated in a testable microscopic model describing hole-mediated magnetic ordering in this and several related manganese-doped III-V semiconductors [1]. The recent discovery of high-Curietemperature (TC) ferromagnetism in doped oxide semiconductors has stimulated intense experimental and theoretical interest in these materials [2]. In contrast with Ga1� xMnxAs, a clear consensus has not yet been reached about the relationship between carriers (bound or free) and ferromagnetism in these doped oxides. Only through identification and systematic variation of key compositional parameters will a significant advance in the understanding of high-TC ferromagnetism in doped oxides be realized. In this Letter, we demonstrate that the native shallow donor interstitial zinc (Zni) is capable of activating high-TC ferromagnetism in Co 2� -doped ZnO (Co 2� : ZnO). The Zni concentration in an oriented epitaxial thin film of Co 2� : ZnO was systematically varied by controlled oxidative removal of these shallow donors at elevated temperatures. A direct correlation between the 300 K ferromagnetic saturation moment (MS) and the concentration of Zni was observed. The experimental activation barriers clearly identify the diffusion of Zni as the rate-determining process in the oxidative quenching of ferromagnetism in Co 2� : ZnO. These results provide conclusive evidence that the high-TC ferromagnetism in Co 2� : ZnO is mediated by