Purdue University

About: Purdue University is a education organization based out in West Lafayette, Indiana, United States. It is known for research contribution in the topics: Population & Heat transfer. The organization has 73219 authors who have published 163563 publications receiving 5775236 citations. The organization is also known as: Purdue & Purdue-West Lafayette.

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Abstract: De novo assembly of RNA-seq data enables researchers to study transcriptomes without the need for a genome sequence; this approach can be usefully applied, for instance, in research on 'non-model organisms' of ecological and evolutionary importance, cancer samples or the microbiome. In this protocol we describe the use of the Trinity platform for de novo transcriptome assembly from RNA-seq data in non-model organisms. We also present Trinity-supported companion utilities for downstream applications, including RSEM for transcript abundance estimation, R/Bioconductor packages for identifying differentially expressed transcripts across samples and approaches to identify protein-coding genes. In the procedure, we provide a workflow for genome-independent transcriptome analysis leveraging the Trinity platform. The software, documentation and demonstrations are freely available from http://trinityrnaseq.sourceforge.net. The run time of this protocol is highly dependent on the size and complexity of data to be analyzed. The example data set analyzed in the procedure detailed herein can be processed in less than 5 h.

Principles of Computerized Tomographic Imaging

Abstract: Tomography refers to the cross-sectional imaging of an object from either transmission or reflection data collected by illuminating the object from many different directions. The impact of tomography in diagnostic medicine has been revolutionary, since it has enabled doctors to view internal organs with unprecedented precision and safety to the patient. There are also numerous nonmedical imaging applications which lend themselves to methods of computerized tomography, such as mapping of underground resources...cross-sectional imaging of for nondestructive testing...the determination of the brightness distribution over a celestial sphere...three-dimensional imaging with electron microscopy. Principles of Computerized Tomographic Imaging provides a tutorial overview of topics in tomographic imaging covering mathematical principles and theory...how to apply the theory to problems in medical imaging and other fields...several variations of tomography that are currently being researched.

Electronic transport in mesoscopic systems

Abstract: 1. Preliminary concepts 2. Conductance from transmission 3. Transmission function, S-matrix and Green's functions 4. Quantum Hall effect 5. Localisation and fluctuations 6. Double-barrier tunnelling 7. Optical analogies 8. Non-equilibrium Green's function formalism.