Qatar Computing Research Institute

About: Qatar Computing Research Institute is a based out in . It is known for research contribution in the topics: Social media & Machine translation. The organization has 270 authors who have published 1633 publications receiving 51720 citations.

Rayyan-a web and mobile app for systematic reviews.

Abstract: Synthesis of multiple randomized controlled trials (RCTs) in a systematic review can summarize the effects of individual outcomes and provide numerical answers about the effectiveness of interventions. Filtering of searches is time consuming, and no single method fulfills the principal requirements of speed with accuracy. Automation of systematic reviews is driven by a necessity to expedite the availability of current best evidence for policy and clinical decision-making. We developed Rayyan ( http://rayyan.qcri.org ), a free web and mobile app, that helps expedite the initial screening of abstracts and titles using a process of semi-automation while incorporating a high level of usability. For the beta testing phase, we used two published Cochrane reviews in which included studies had been selected manually. Their searches, with 1030 records and 273 records, were uploaded to Rayyan. Different features of Rayyan were tested using these two reviews. We also conducted a survey of Rayyan’s users and collected feedback through a built-in feature. Pilot testing of Rayyan focused on usability, accuracy against manual methods, and the added value of the prediction feature. The “taster” review (273 records) allowed a quick overview of Rayyan for early comments on usability. The second review (1030 records) required several iterations to identify the previously identified 11 trials. The “suggestions” and “hints,” based on the “prediction model,” appeared as testing progressed beyond five included studies. Post rollout user experiences and a reflexive response by the developers enabled real-time modifications and improvements. The survey respondents reported 40% average time savings when using Rayyan compared to others tools, with 34% of the respondents reporting more than 50% time savings. In addition, around 75% of the respondents mentioned that screening and labeling studies as well as collaborating on reviews to be the two most important features of Rayyan. As of November 2016, Rayyan users exceed 2000 from over 60 countries conducting hundreds of reviews totaling more than 1.6M citations. Feedback from users, obtained mostly through the app web site and a recent survey, has highlighted the ease in exploration of searches, the time saved, and simplicity in sharing and comparing include-exclude decisions. The strongest features of the app, identified and reported in user feedback, were its ability to help in screening and collaboration as well as the time savings it affords to users. Rayyan is responsive and intuitive in use with significant potential to lighten the load of reviewers.

TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data.

Abstract: The Cancer Genome Atlas (TCGA) research network has made public a large collection of clinical and molecular phenotypes of more than 10 000 tumor patients across 33 different tumor types. Using this cohort, TCGA has published over 20 marker papers detailing the genomic and epigenomic alterations associated with these tumor types. Although many important discoveries have been made by TCGA's research network, opportunities still exist to implement novel methods, thereby elucidating new biological pathways and diagnostic markers. However, mining the TCGA data presents several bioinformatics challenges, such as data retrieval and integration with clinical data and other molecular data types (e.g. RNA and DNA methylation). We developed an R/Bioconductor package called TCGAbiolinks to address these challenges and offer bioinformatics solutions by using a guided workflow to allow users to query, download and perform integrative analyses of TCGA data. We combined methods from computer science and statistics into the pipeline and incorporated methodologies developed in previous TCGA marker studies and in our own group. Using four different TCGA tumor types (Kidney, Brain, Breast and Colon) as examples, we provide case studies to illustrate examples of reproducibility, integrative analysis and utilization of different Bioconductor packages to advance and accelerate novel discoveries.

SemEval-2017 Task 4: Sentiment Analysis in Twitter

Abstract: This paper describes the fifth year of the Sentiment Analysis in Twitter task. SemEval-2017 Task 4 continues with a rerun of the subtasks of SemEval-2016 Task 4, which include identifying the overall sentiment of the tweet, sentiment towards a topic with classification on a two-point and on a five-point ordinal scale, and quantification of the distribution of sentiment towards a topic across a number of tweets: again on a two-point and on a five-point ordinal scale. Compared to 2016, we made two changes: (i) we introduced a new language, Arabic, for all subtasks, and (ii) we made available information from the profiles of the Twitter users who posted the target tweets. The task continues to be very popular, with a total of 48 teams participating this year.

Unmanned Aerial Vehicles: A Survey on Civil Applications and Key Research Challenges

Abstract: The use of unmanned aerial vehicles (UAVs) is growing rapidly across many civil application domains, including real-time monitoring, providing wireless coverage, remote sensing, search and rescue, delivery of goods, security and surveillance, precision agriculture, and civil infrastructure inspection. Smart UAVs are the next big revolution in the UAV technology promising to provide new opportunities in different applications, especially in civil infrastructure in terms of reduced risks and lower cost. Civil infrastructure is expected to dominate more than $45 Billion market value of UAV usage. In this paper, we present UAV civil applications and their challenges. We also discuss the current research trends and provide future insights for potential UAV uses. Furthermore, we present the key challenges for UAV civil applications, including charging challenges, collision avoidance and swarming challenges, and networking and security-related challenges. Based on our review of the recent literature, we discuss open research challenges and draw high-level insights on how these challenges might be approached.

Learning to Rank Short Text Pairs with Convolutional Deep Neural Networks

Abstract: Learning a similarity function between pairs of objects is at the core of learning to rank approaches In information retrieval tasks we typically deal with query-document pairs, in question answering -- question-answer pairs However, before learning can take place, such pairs needs to be mapped from the original space of symbolic words into some feature space encoding various aspects of their relatedness, eg lexical, syntactic and semantic Feature engineering is often a laborious task and may require external knowledge sources that are not always available or difficult to obtain Recently, deep learning approaches have gained a lot of attention from the research community and industry for their ability to automatically learn optimal feature representation for a given task, while claiming state-of-the-art performance in many tasks in computer vision, speech recognition and natural language processing In this paper, we present a convolutional neural network architecture for reranking pairs of short texts, where we learn the optimal representation of text pairs and a similarity function to relate them in a supervised way from the available training data Our network takes only words in the input, thus requiring minimal preprocessing In particular, we consider the task of reranking short text pairs where elements of the pair are sentences We test our deep learning system on two popular retrieval tasks from TREC: Question Answering and Microblog Retrieval Our model demonstrates strong performance on the first task beating previous state-of-the-art systems by about 3\% absolute points in both MAP and MRR and shows comparable results on tweet reranking, while enjoying the benefits of no manual feature engineering and no additional syntactic parsers