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Rural Development Administration

GovernmentJeonju, South Korea
About: Rural Development Administration is a government organization based out in Jeonju, South Korea. It is known for research contribution in the topics: Population & Gene. The organization has 4372 authors who have published 4919 publications receiving 94318 citations.


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Journal ArticleDOI
TL;DR: Among the regions of the ribosomal cistron, the internal transcribed spacer (ITS) region has the highest probability of successful identification for the broadest range of fungi, with the most clearly defined barcode gap between inter- and intraspecific variation.
Abstract: Six DNA regions were evaluated as potential DNA barcodes for Fungi, the second largest kingdom of eukaryotic life, by a multinational, multilaboratory consortium. The region of the mitochondrial cytochrome c oxidase subunit 1 used as the animal barcode was excluded as a potential marker, because it is difficult to amplify in fungi, often includes large introns, and can be insufficiently variable. Three subunits from the nuclear ribosomal RNA cistron were compared together with regions of three representative protein-coding genes (largest subunit of RNA polymerase II, second largest subunit of RNA polymerase II, and minichromosome maintenance protein). Although the protein-coding gene regions often had a higher percent of correct identification compared with ribosomal markers, low PCR amplification and sequencing success eliminated them as candidates for a universal fungal barcode. Among the regions of the ribosomal cistron, the internal transcribed spacer (ITS) region has the highest probability of successful identification for the broadest range of fungi, with the most clearly defined barcode gap between inter- and intraspecific variation. The nuclear ribosomal large subunit, a popular phylogenetic marker in certain groups, had superior species resolution in some taxonomic groups, such as the early diverging lineages and the ascomycete yeasts, but was otherwise slightly inferior to the ITS. The nuclear ribosomal small subunit has poor species-level resolution in fungi. ITS will be formally proposed for adoption as the primary fungal barcode marker to the Consortium for the Barcode of Life, with the possibility that supplementary barcodes may be developed for particular narrowly circumscribed taxonomic groups.

4,116 citations

Journal ArticleDOI
Takashi Matsumoto1, Jianzhong Wu1, Hiroyuki Kanamori1, Yuichi Katayose1  +262 moreInstitutions (25)
11 Aug 2005-Nature
TL;DR: A map-based, finished quality sequence that covers 95% of the 389 Mb rice genome, including virtually all of the euchromatin and two complete centromeres, and finds evidence for widespread and recurrent gene transfer from the organelles to the nuclear chromosomes.
Abstract: Rice, one of the world's most important food plants, has important syntenic relationships with the other cereal species and is a model plant for the grasses. Here we present a map-based, finished quality sequence that covers 95% of the 389 Mb genome, including virtually all of the euchromatin and two complete centromeres. A total of 37,544 non-transposable-element-related protein-coding genes were identified, of which 71% had a putative homologue in Arabidopsis. In a reciprocal analysis, 90% of the Arabidopsis proteins had a putative homologue in the predicted rice proteome. Twenty-nine per cent of the 37,544 predicted genes appear in clustered gene families. The number and classes of transposable elements found in the rice genome are consistent with the expansion of syntenic regions in the maize and sorghum genomes. We find evidence for widespread and recurrent gene transfer from the organelles to the nuclear chromosomes. The map-based sequence has proven useful for the identification of genes underlying agronomic traits. The additional single-nucleotide polymorphisms and simple sequence repeats identified in our study should accelerate improvements in rice production.

3,423 citations

Journal ArticleDOI
Xiaowu Wang1, Hanzhong Wang, Jun Wang2, Jun Wang3, Jun Wang4, Rifei Sun, Jian Wu, Shengyi Liu, Yinqi Bai3, Jeong-Hwan Mun5, Ian Bancroft6, Feng Cheng, Sanwen Huang, Xixiang Li, Wei Hua, Junyi Wang3, Xiyin Wang7, Xiyin Wang8, Michael Freeling9, J. Chris Pires10, Andrew H. Paterson8, Boulos Chalhoub, Bo Wang3, Alice Hayward11, Alice Hayward12, Andrew G. Sharpe13, Beom-Seok Park5, Bernd Weisshaar14, Binghang Liu3, Bo Li3, Bo Liu, Chaobo Tong, Chi Song3, Chris Duran11, Chris Duran15, Chunfang Peng3, Geng Chunyu3, Chushin Koh13, Chuyu Lin3, David Edwards11, David Edwards15, Desheng Mu3, Di Shen, Eleni Soumpourou6, Fei Li, Fiona Fraser6, Gavin C. Conant10, Gilles Lassalle16, Graham J.W. King2, Guusje Bonnema17, Haibao Tang9, Haiping Wang, Harry Belcram, Heling Zhou3, Hideki Hirakawa, Hiroshi Abe, Hui Guo8, Hui Wang, Huizhe Jin8, Isobel A. P. Parkin18, Jacqueline Batley12, Jacqueline Batley11, Jeong-Sun Kim5, Jérémy Just, Jianwen Li3, Jiaohui Xu3, Jie Deng, Jin A Kim5, Jingping Li8, Jingyin Yu, Jinling Meng19, Jinpeng Wang7, Jiumeng Min3, Julie Poulain20, Katsunori Hatakeyama, Kui Wu3, Li Wang7, Lu Fang, Martin Trick6, Matthew G. Links18, Meixia Zhao, Mina Jin5, Nirala Ramchiary21, Nizar Drou22, Paul J. Berkman11, Paul J. Berkman15, Qingle Cai3, Quanfei Huang3, Ruiqiang Li3, Satoshi Tabata, Shifeng Cheng3, Shu Zhang3, Shujiang Zhang, Shunmou Huang, Shusei Sato, Silong Sun, Soo-Jin Kwon5, Su-Ryun Choi21, Tae-Ho Lee8, Wei Fan3, Xiang Zhao3, Xu Tan8, Xun Xu3, Yan Wang, Yang Qiu, Ye Yin3, Yingrui Li3, Yongchen Du, Yongcui Liao, Yong Pyo Lim21, Yoshihiro Narusaka, Yupeng Wang7, Zhenyi Wang7, Zhenyu Li3, Zhiwen Wang3, Zhiyong Xiong10, Zhonghua Zhang 
TL;DR: The annotation and analysis of the draft genome sequence of Brassica rapa accession Chiifu-401-42, a Chinese cabbage, and used Arabidopsis thaliana as an outgroup for investigating the consequences of genome triplication, such as structural and functional evolution.
Abstract: We report the annotation and analysis of the draft genome sequence of Brassica rapa accession Chiifu-401-42, a Chinese cabbage. We modeled 41,174 protein coding genes in the B. rapa genome, which has undergone genome triplication. We used Arabidopsis thaliana as an outgroup for investigating the consequences of genome triplication, such as structural and functional evolution. The extent of gene loss (fractionation) among triplicated genome segments varies, with one of the three copies consistently retaining a disproportionately large fraction of the genes expected to have been present in its ancestor. Variation in the number of members of gene families present in the genome may contribute to the remarkable morphological plasticity of Brassica species. The B. rapa genome sequence provides an important resource for studying the evolution of polyploid genomes and underpins the genetic improvement of Brassica oil and vegetable crops.

1,811 citations

Journal ArticleDOI
15 Apr 2017-Geoderma
TL;DR: In this paper, the authors surveyed the soil organic carbon (SOC) stock estimates and sequestration potentials from 20 regions in the world (New Zealand, Chile, South Africa, Australia, Tanzania, Indonesia, Kenya, Nigeria, India, China Taiwan, South Korea, China Mainland, United States of America, France, Canada, Belgium, England & Wales, Ireland, Scotland, and Russia).

1,171 citations

Journal ArticleDOI
Nevin D. Young1, Frédéric Debellé2, Frédéric Debellé3, Giles E. D. Oldroyd4, René Geurts5, Steven B. Cannon6, Steven B. Cannon7, Michael K. Udvardi, Vagner A. Benedito8, Klaus F. X. Mayer, Jérôme Gouzy2, Jérôme Gouzy3, Heiko Schoof9, Yves Van de Peer10, Sebastian Proost10, Douglas R. Cook11, Blake C. Meyers12, Manuel Spannagl, Foo Cheung13, Stéphane De Mita5, Vivek Krishnakumar13, Heidrun Gundlach, Shiguo Zhou14, Joann Mudge15, Arvind K. Bharti15, Jeremy D. Murray4, Marina Naoumkina, Benjamin D. Rosen11, Kevin A. T. Silverstein1, Haibao Tang13, Stephane Rombauts10, Patrick X. Zhao, Peng Zhou1, Valérie Barbe, Philippe Bardou3, Philippe Bardou2, Michael Bechner14, Arnaud Bellec3, Anne Berger, Hélène Bergès3, Shelby L. Bidwell13, Ton Bisseling16, Ton Bisseling5, Nathalie Choisne, Arnaud Couloux, Roxanne Denny1, Shweta Deshpande17, Xinbin Dai, Jeff J. Doyle18, Anne Marie Dudez3, Anne Marie Dudez2, Andrew Farmer15, Stéphanie Fouteau, Carolien Franken5, Chrystel Gibelin2, Chrystel Gibelin3, John Gish11, Steven A. Goldstein14, Alvaro J. González12, Pamela J. Green12, Asis Hallab19, Marijke Hartog5, Axin Hua17, Sean Humphray20, Dong-Hoon Jeong12, Yi Jing17, Anika Jöcker19, Steve Kenton17, Dong-Jin Kim21, Dong-Jin Kim11, Kathrin Klee19, Hongshing Lai17, Chunting Lang5, Shaoping Lin17, Simone L. Macmil17, Ghislaine Magdelenat, Lucy Matthews20, Jamison McCorrison13, Erin L. Monaghan13, Jeong Hwan Mun22, Jeong Hwan Mun11, Fares Z. Najar17, Christine Nicholson20, Céline Noirot3, Majesta O'Bleness17, Charles Paule1, Julie Poulain, Florent Prion3, Florent Prion2, Baifang Qin17, Chunmei Qu17, Ernest F. Retzel15, Claire Riddle20, Erika Sallet3, Erika Sallet2, Sylvie Samain, Nicolas Samson2, Nicolas Samson3, Iryna Sanders17, Olivier Saurat3, Olivier Saurat2, Claude Scarpelli, Thomas Schiex3, Béatrice Segurens, Andrew J. Severin6, D. Janine Sherrier12, Ruihua Shi17, Sarah Sims20, Susan R. Singer23, Senjuti Sinharoy, Lieven Sterck10, Agnès Viollet, Bing Bing Wang1, Keqin Wang17, Mingyi Wang, Xiaohong Wang1, Jens Warfsmann19, Jean Weissenbach, Doug White17, James D. White17, Graham B. Wiley17, Patrick Wincker, Yanbo Xing17, Limei Yang17, Ziyun Yao17, Fu Ying17, Jixian Zhai12, Liping Zhou17, Antoine Zuber2, Antoine Zuber3, Jean Dénarié2, Jean Dénarié3, Richard A. Dixon, Gregory D. May15, David C. Schwartz14, Jane Rogers24, Francis Quetier, Christopher D. Town13, Bruce A. Roe17 
22 Dec 2011-Nature
TL;DR: The draft sequence of the M. truncatula genome sequence is described, a close relative of alfalfa (Medicago sativa), a widely cultivated crop with limited genomics tools and complex autotetraploid genetics, which provides significant opportunities to expand al falfa’s genomic toolbox.
Abstract: Legumes (Fabaceae or Leguminosae) are unique among cultivated plants for their ability to carry out endosymbiotic nitrogen fixation with rhizobial bacteria, a process that takes place in a specialized structure known as the nodule. Legumes belong to one of the two main groups of eurosids, the Fabidae, which includes most species capable of endosymbiotic nitrogen fixation. Legumes comprise several evolutionary lineages derived from a common ancestor 60 million years ago (Myr ago). Papilionoids are the largest clade, dating nearly to the origin of legumes and containing most cultivated species. Medicago truncatula is a long-established model for the study of legume biology. Here we describe the draft sequence of the M. truncatula euchromatin based on a recently completed BAC assembly supplemented with Illumina shotgun sequence, together capturing ∼94% of all M. truncatula genes. A whole-genome duplication (WGD) approximately 58 Myr ago had a major role in shaping the M. truncatula genome and thereby contributed to the evolution of endosymbiotic nitrogen fixation. Subsequent to the WGD, the M. truncatula genome experienced higher levels of rearrangement than two other sequenced legumes, Glycine max and Lotus japonicus. M. truncatula is a close relative of alfalfa (Medicago sativa), a widely cultivated crop with limited genomics tools and complex autotetraploid genetics. As such, the M. truncatula genome sequence provides significant opportunities to expand alfalfa's genomic toolbox.

1,153 citations


Authors

Showing all 4390 results

NameH-indexPapersCitations
Richard G. F. Visser8560731019
Sung Woo Kim6031912280
Ill-Min Chung5753912573
Kwang-Jin Kim502447629
Jules Janick453489359
Pil Joon Seo451216799
Sun Yeou Kim441485441
Tae-Jin Yang422099847
Mariadhas Valan Arasu412525545
Hyeran Kim4119814548
Muhammad Rauf411646742
Yong Pyo Lim412268325
Sang Hong Lee399711171
Young Jun Kim362335498
Gi-Ho Sung3616812702
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Performance
Metrics
No. of papers from the Institution in previous years
YearPapers
20233
202235
2021421
2020449
2019381
2018368