Showing papers by "Spanish National Research Council published in 2000"

The transcription factor Snail controls epithelial–mesenchymal transitions by repressing E-cadherin expression

Abstract: The Snail family of transcription factors has previously been implicated in the differentiation of epithelial cells into mesenchymal cells (epithelial-mesenchymal transitions) during embryonic development. Epithelial-mesenchymal transitions are also determinants of the progression of carcinomas, occurring concomitantly with the cellular acquisition of migratory properties following downregulation of expression of the adhesion protein E-cadherin. Here we show that mouse Snail is a strong repressor of transcription of the E-cadherin gene. Epithelial cells that ectopically express Snail adopt a fibroblastoid phenotype and acquire tumorigenic and invasive properties. Endogenous Snail protein is present in invasive mouse and human carcinoma cell lines and tumours in which E-cadherin expression has been lost. Therefore, the same molecules are used to trigger epithelial-mesenchymal transitions during embryonic development and in tumour progression. Snail may thus be considered as a marker for malignancy, opening up new avenues for the design of specific anti-invasive drugs.

Antioxidant activity of dietary polyphenols as determined by a modified ferric reducing/antioxidant power assay

Abstract: Most nonenzymatic antioxidant activity (scavenging of free radicals, inhibition of lipid peroxidation, etc.) is mediated by redox reactions. The antioxidant (AO) activity of polyphenols (PPs), as f...

Comprehensive analytic formulae for stellar evolution as a function of mass and metallicity

Abstract: We present analytic formulae that approximate the evolution of stars for a wide range of mass M and metallicity Z Stellar luminosity, radius and core mass are given as a function of age, M and Z, for all phases from the zero-age main sequence up to, and including, the remnant stages For the most part we find continuous formulae accurate to within 5 per cent of detailed models These formulae are useful for purposes such as population synthesis that require very rapid but accurate evaluation of stellar properties, and in particular for use in combination with N-body codes We describe a mass-loss prescription that can be used with these formulae, and investigate the resulting stellar remnant distribution

Review of Particle Physics

Abstract: This biennial Review summarizes much of particle physics. Using data from previous editions., plus 2778 new measurements from 645 papers, we list, evaluate, and average measured properties of gauge bosons, leptons, quarks, mesons, and baryons. We also summarize searches for hypothetical particles such as Higgs bosons, heavy neutrinos, and supersymmetric particles. All the particle properties and search limits are listed in Summary Tables. We also give numerous tables, figures, formulae, and reviews of topics such as the Standard Model, particle detectors., probability, and statistics. Among the 108 reviews are many that are new or heavily revised including those on CKM quark-mixing matrix, V-ud & V-us, V-cb & V-ub, top quark, muon anomalous magnetic moment, extra dimensions, particle detectors, cosmic background radiation, dark matter, cosmological parameters, and big bang cosmology.

Large-scale synthesis of a silicon photonic crystal with a complete three-dimensional bandgap near 1.5 micrometres

Abstract: Photonic technology, using light instead of electrons as the information carrier, is increasingly replacing electronics in communication and information management systems. Microscopic light manipulation, for this purpose, is achievable through photonic bandgap materials1,2, a special class of photonic crystals in which three-dimensional, periodic dielectric constant variations controllably prohibit electromagnetic propagation throughout a specified frequency band. This can result in the localization of photons3,4,5,6, thus providing a mechanism for controlling and inhibiting spontaneous light emission that can be exploited for photonic device fabrication. In fact, carefully engineered line defects could act as waveguides connecting photonic devices in all-optical microchips7, and infiltration of the photonic material with suitable liquid crystals might produce photonic bandgap structures (and hence light-flow patterns) fully tunable by an externally applied voltage8,9,10. However, the realization of this technology requires a strategy for the efficient synthesis of high-quality, large-scale photonic crystals with photonic bandgaps at micrometre and sub-micrometre wavelengths, and with rationally designed line and point defects for optical circuitry. Here we describe single crystals of silicon inverse opal with a complete three-dimensional photonic bandgap centred on 1.46 µm, produced by growing silicon inside the voids of an opal template of close-packed silica spheres that are connected by small ‘necks’ formed during sintering, followed by removal of the silica template. The synthesis method is simple and inexpensive, yielding photonic crystals of pure silicon that are easily integrated with existing silicon-based microelectronics.

Cellular and network mechanisms of rhythmic recurrent activity in neocortex.

Abstract: The neocortex generates periods of recurrent activity, such as the slow (0.1-0.5 Hz) oscillation during slow-wave sleep. Here we demonstrate that slices of ferret neocortex maintained in vitro generate this slow (< 1 Hz) rhythm when placed in a bathing medium that mimics the extracellular ionic composition in situ. This slow oscillation seems to be initiated in layer 5 as an excitatory interaction between pyramidal neurons and propagates through the neocortex. Our results demonstrate that the cerebral cortex generates an 'up' or depolarized state through recurrent excitation that is regulated by inhibitory networks, thereby allowing local cortical circuits to enter into temporarily activated and self-maintained excitatory states. The spontaneous generation and failure of this self-excited state may account for the generation of a subset of cortical rhythms during sleep.

Behavior of Ylides Containing N, O, and C Atoms as Hydrogen Bond Acceptors

Abstract: The hydrogen bond (HB) basicity of a series of ylides containing nitrogen, oxygen, or carbon as heavy atoms, as well as the influence of the formation of the HB complexes on their structure, has been studied. In addition, in this paper we propose the formation of some rather strong HBs (that could be considered low-barrier hydrogen bonds, LBHBs) between ylides and different neutral molecules. The ylides chosen for the study were H3N+−N-H, Me3N+−N-H, H2O+−N-H, Me2O+−N-H, H2O+−O-, Me2O+−O-, and Me3N+−C-H2. As HB donors, classical donors such as HF, HCN, and HCCH were used. The analysis of the protonation energies of the ylides and the optimized geometries, interaction energies, and characteristics of the electron density of the complexes shows that these ylides are very good HB acceptors, forming stable complexes even with weak HB donors. With strong donors, when the proton transfer did not take place, very strong HBs were formed with quite large interaction energies and very short HB distances which could ...

Coexistence of ferromagnetism and metallic conductivity in a molecule-based layered compound

Abstract: Crystal engineering--the planning and construction of crystalline supramolecular architectures from modular building blocks--permits the rational design of functional molecular materials that exhibit technologically useful behaviour such as conductivity and superconductivity, ferromagnetism and nonlinear optical properties. Because the presence of two cooperative properties in the same crystal lattice might result in new physical phenomena and novel applications, a particularly attractive goal is the design of molecular materials with two properties that are difficult or impossible to combine in a conventional inorganic solid with a continuous lattice. A promising strategy for creating this type of 'bi-functionality' targets hybrid organic/inorganic crystals comprising two functional sub-lattices exhibiting distinct properties. In this way, the organic pi-electron donor bis(ethylenedithio)tetrathiafulvalene (BEDT-TTF) and its derivatives, which form the basis of most known molecular conductors and superconductors, have been combined with molecular magnetic anions, yielding predominantly materials with conventional semiconducting or conducting properties, but also systems that are both superconducting and paramagnetic. But interesting bulk magnetic properties fail to develop, owing to the discrete nature of the inorganic anions. Another strategy for achieving cooperative magnetism involves insertion of functional bulky cations into a polymeric magnetic anion, such as the bimetallic oxalato complex [MnIICrIII(C2O4)3]-, but only insoluble powders have been obtained in most cases. Here we report the synthesis of single crystals formed by infinite sheets of this magnetic coordination polymer interleaved with layers of conducting BEDT-TTF cations, and show that this molecule-based compound displays ferromagnetism and metallic conductivity.

Super Poincare covariant quantization of the superstring

Abstract: Inst. de Fis. Teorica Universidade Estadual Paulista, Rua Pamplona 145, 01405-900, Sao Paulo, SP

Tolerance of pea (Pisum sativum L.) to long‐term salt stress is associated with induction of antioxidant defences

Abstract: Using two cultivars of Pisum sativum L. with different sensitivity to NaCl, the effect of long-term (15 d) NaCl (70 m M) treatments on the activity and expression of the foliar ascorbate–glutathione cycle enzymes, superoxide dismutase isozymes and their mRNAs was evaluated and related to their ascorbate and glutathione contents. High-speed supernatant (soluble) fractions, enriched for cytosolic components of the antioxidant system, were used. In this fraction from the NaCl-tolerant variety (cv Granada), the activities of ascorbate peroxidase (APX), glutathione reductase (GR), monodehydroascorbate reductase (MDHAR), Mn-superoxide dismutase (Mn-SOD) and dehydroascorbate reductase (DHAR) increased, while CuZn-SOD activity remained constant. In the NaCl-sensitive plants (cv Challis), salinity did not produce significant changes in APX, MDHAR and GR activities. Only DHAR activity was induced in cv Challis, whereas soluble CuZn-SOD activity decreased by about 35%. Total ascorbate and glutathione contents decreased in both cultivars, but the decline was greater in NaCl-sensitive plants. This difference between the two cultivars was more pronounced when the transcript levels of some these enzymes were examined. Transcript levels for mitochondrial Mn-SOD, chloroplastic CuZn-SOD and phospholipid hydroperoxide glutathione peroxidase (PHGPX), cytosolic GR and APX were strongly induced in the NaCl-tolerant variety but not in the NaCl-sensitive variety. These data strongly suggest that induction of antioxidant defences is at least one component of the tolerance mechanism of peas to long-term salt-stress.

Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities

Abstract: Flow cytometry is rapidly becoming a routine methodology in aquatic microbial ecology. The combination of simple to use bench-top flow cytometers and highly fluorescent nucleic acid stains allows fast and easy determination of microbe abundance in the plankton of lakes and oceans. The different dyes and protocols used to stain and count planktonic bacteria as well as the equipment in use are reviewed, with special attention to some of the problems encountered in daily routine practice such as fixation, staining and absolute counting. One of the main advantages of flow cytometry over epifluorescence microscopy is the ability to obtain cell-specific measurements in large numbers of cells with limited effort. We discuss how this characteristic has been used for differentiating photosynthetic from non-photosynthetic prokaryotes, for measuring bacterial cell size and nucleic acid content, and for estimating the relative activity and physiological state of each cell. We also describe how some of the flow cytometrically obtained data can be used to characterize the role of microbes on carbon cycling in the aquatic environment and we prospect the likely avenues of progress in the study of planktonic prokaryotes through the use of flow cytometry.

Practical Limits of Function Prediction

Abstract: The widening gap between known protein sequences and their functions has led to the practice of assigning a potential function to a pro- tein on the basis of sequence similarity to proteins whose function has been experimentally investi- gated. We present here a critical view of the theoreti- cal and practical bases for this approach. The re- sults obtained by analyzing a significant number of true sequence similarities, derived directly from structural alignments, point to the complexity of function prediction. Different aspects of protein function, including (i) enzymatic function classifica- tion, (ii) functional annotations in the form of key words, (iii) classes of cellular function, and (iv) conservation of binding sites can only be reliably transferred between similar sequences to a modest degree. The reason for this difficulty is a combina- tion of the unavoidable database inaccuracies and the plasticity of protein function. In addition, analy- sis of the relationship between sequence and func- tional descriptions defines an empirical limit for pairwise-based functional annotations, namely, the three first digits of the six numbers used as descrip- tors of protein folds in the FSSP database can be predicted at an average level as low as 7.5% se- quence identity, two of the four EC digits at 15% identity, half of the SWISS-PROT key words related to protein function would require 20% identity, and the prediction of half of the residues in the binding site can be made at the 30% sequence identity level.

Regulation of protein function by S-glutathiolation in response to oxidative and nitrosative stress.

Abstract: Protein S-glutathiolation, the reversible covalent addition of glutathione to cysteine residues on target proteins, is emerging as a candidate mechanism by which both changes in the intracellular redox state and the generation of reactive oxygen and nitrogen species may be transduced into a functional response. This review will provide an introduction to the concepts of oxidative and nitrosative stress and outline the molecular mechanisms of protein regulation by oxidative and nitrosative thiol-group modifications. Special attention will be paid to recently published work supporting a role for S-glutathiolation in stress signalling pathways and in the adaptive cellular response to oxidative and nitrosative stress. Finally, novel insights into the molecular mechanisms of S-glutathiolation as well as methodological problems related to the interpretation of the biological relevance of this post-translational protein modification will be discussed.

Plastic Phenotypic Response to Light of 16 Congeneric Shrubs From a Panamanian Rainforest

Abstract: The comparative phenotypic plasticity of 16 species of tropical rainforest shrubs (genus Psychotria, Rubiaceae) was investigated by growing plants in three light environments on Barro Colorado Island (BCI, Panama). The three light environments gave daily photon flux densities (PPFD) similar to the natural light gradient from shaded forest understory to small and large canopy gaps. Six of the species are principally found in gaps or forest edge environments, whereas the other ten species are principally found in shaded understories. Interactions between light treatment and species resulted in unpredictable mean phenotypic expression across light treatments. Shoot relative growth rates (RGR) were similar for understory and gap species in the low light treatment. Gap species had significantly greater shoot RGR in the intermediate light treatment than in the high light treatment. Mean plasticity was significantly lower for morphological variables when com- pared to physiological variables, while variation in plasticity was significantly greater for structural variables. Significant differences between gap and understory species were found in the plasticity of six out of the seven variables. The mean phenotypic plasticity of the seven variables was significantly greater for gap than for understory species. The high plasticity of gap species was consistent with the hypothesis that specialization in a more favorable environment increases plasticity. The species exhibited a wide range of leaf longevities, from four to 29 months, with gap species having, on average, shorter leaf life- span than understory species. Mean phenotypic plasticity decreased with increasing leaf longevity. Selection for greater plasticity may be stronger in the gap species because gaps exhibit a relatively predictable decrease in PPFD for which plasticity could be adaptive. While we have found a significant correlation between phenotypic plasticity and habitat affiliation, phylogeny (subgenus ascription) was not correlated with plasticity or with plant performance in any given PPFD treatment, reinforcing the hypothesis that phenotypic plas- ticity has evolved through natural selection in this diverse genus.

Mutation Frequencies and Antibiotic Resistance

Abstract: Antibiotic resistance can be achieved by horizontal acquisition of resistance genes (carried by plasmids or transposons), by recombination of foreign DNA into the chromosome, or by mutations in different chromosomal loci ([15][1]). In studies of molecular evolutionary biology, the term mutation rate

Is neuropsychological development related to maternal hypothyroidism or to maternal hypothyroxinemia

Abstract: Several recent publications have drawn attention to the role of the thyroid hormone status of the mother on the future neuropsychological development of the child. The screening of pregnant women for clinical or subclinical hypothyroidism based on second trimester elevated maternal TSH values has been proposed. Here, we have summarized present epidemiological and experimental evidence strongly suggesting that conditions resulting in first trimester hypothyroxinemia (a low for gestational age circulating maternal free T4, whether or not TSH is increased) pose an increased risk for poor neuropsychological development of the fetus. This would be a consequence of decreased availability of maternal T4 to the developing brain, its only source of thyroid hormone during the first trimester; T4 is the required substrate for the ontogenically regulated generation of T3 in the amounts needed for optimal development in different brain structures, both temporally and spatially. Normal maternal T3 concentrations do not...

Nutrient and temperature control of the contribution of picoplankton to phytoplankton biomass and production

Abstract: The observation that the relative importance of picophytoplankton is greatest in warm and nutrient-poor waters was tested here based on a comprehensive review of the data available in the literature from oceanic and coastal estuarine areas. Results show that picophytoplankton dominate ($50%) the biomass and production in oligotrophic (chlorophyll a [Chl a] , 0.3 mg m 23 ), nutrient poor (NO3 1 NO2 , 1 mM), and warm (.268C) waters, but represent ,10% of autotrophic biomass and production in rich (Chl a . 5m g m 23 ) and cold (,38C) waters. There is, however, a strong covariation between temperature and nutrient concentration (r 52 0.95, P , 0.001), but the number of observations where both temperature and nutrient concentrations are available is too small to allow attempts to statistically separate their effects. The results of mesocosm nutrient addition experiments during summer in the Mediterranean Sea allowed the dissociation of the effects of temperature from those of nutrients on picophytoplankton production and biomass and validated the magnitude at which picoplankton dominates ($50%) autotrophic biomass and production obtained in the comparative analysis. The fraction contributed by picoplankton significantly declined (r 2 5 0.76 and 0.90, respectively, P , 0.001) as total autotrophic production and biomass increased. These results support the increasing importance of picophytoplankton in warm, oligotrophic waters. The reduced contribution of picophytoplankton in warm productive waters is hypothesized here to be due to increased loss rates, whereas the dominance of picophytoplankton in warm, oligotrophic waters is attributable to the differential capacity to use nutrients as a function of differences in size and capacity of intrinsic growth of picophytoplankton and larger phytoplankton cells.

Characterization of the total free radical scavenger capacity of vegetable oils and oil fractions using 2,2-diphenyl-1-picrylhydrazyl radical.

Abstract: The total free radical scavenger capacity (RSC) of 57 edible oils from different sources was studied: olive (24 brands of oils), sunflower (6), safflower (2), rapeseed (3), soybean (3), linseed (2), corn (3), hazelnut (2), walnut (2), sesame (2), almond (2), mixture of oils for salad (2), “dietetic” oil (2), and peanut (2). Olive oils were also studied according to their geographical origins (France, Greece, Italy, Morocco, Spain, and Turkey). RSC was determined spectrophotometrically by measuring the disappearance of the radical 2,2-diphenyl-1-picrylhydrazyl radical (DPPH•) at 515 nm. The disappearance of the radical followed a double-exponential equation in the presence of oils and oil fractions, which suggested the presence of two (fast and slow) groups of antioxidants. RSC was studied for the methanol-soluble phase (“methanolic fraction”, MF) of the oil, the fraction nonsoluble in methanol (“lipidic fraction”, LF), and the nonfractionated oil (“total oil”; TF = MF + LF). Only olive, linseed, rapeseed...

Long-term effects of municipal solid waste compost application on soil enzyme activities and microbial biomass

Abstract: A long-term field experiment utilising barley received four different treatments prior to sowing: municipal solid waste (MSW) compost at either 20 t ha 21 (C20) or 80 t ha 21 (C80); cow manure (MA) at 20 t ha 21 ; mineral fertilizer (MIN) or NPK (400 kg ha 21 ); and NH4NO3 (150 kg ha 21 ). The effects of these applications on soil enzyme activities and microbial biomass at crop harvest were measured after nine years. In comparison with the control (no amendment) MSW addition increased biomass C by 10 and 46% at application rates of 20 and 80 t ha 21 , respectively, while MA treatment increased microbial biomass C by 29%. The ratio of soil microbial C to soil organic C was the lowest at the high rate of MSW application. Oxidoreductase enzymes, such as dehydrogenase and catalase, were higher in the MSW treatments by 730 (C20) and 200% (C80), respectively, and by 993 and 140% in MA treatments than in the unamended soil, indicating an increase in the microbial metabolism in the soil as a result of the mineralization of biodegradable C fractions contained in the amendments. The addition of MSW and MA caused different responses in hydrolase enzymes. Phosphatase activity decreased with MSW (^62% at both rates) and MA (^73%), to less than those in the mineral fertilization and the control treatments. Urease activity decreased by 21% (C20) and 28% (C80), possibly being affected by the heavy metals contained in the MSW. However,b-glucosidase and protease-BAA increased in all the organic treatments, especially with MA (by 214 and 177%, respectively). This is attributed to the microbial stimulation by the organic C and is correlated with the increase in dehydrogenase Or 2 a 0:882U and catalaseOr 2 a 0:654U activities. q 2000 Elsevier Science Ltd. All

A Review on Polycyclic Aromatic Hydrocarbon (PAH) Emissions from Energy Generation

Abstract: Polycyclic aromatic hydrocarbons (PAH) emitted from fluidized bed combustion have been reviewed. Firstly, the PAH origin is undertaken. Secondly, the state of the art on their sampling and analytical procedures are commented. Finally, the influence of the fuel, fossil and nonfossil fuels, the combustor type and the combustion variables are analyzed concerning PAH formation and emission in solid/gaseous phase.

Sonic Analog of Gravitational Black Holes in Bose-Einstein Condensates

Abstract: It is shown that, in dilute-gas Bose-Einstein condensates, there exist both dynamically stable and unstable configurations which, in the hydrodynamic limit, exhibit a behavior resembling that of gravitational black holes. The dynamical instabilities involve creation of quasiparticle pairs in positive and negative energy states, as in the well-known suggested mechanism for black-hole evaporation. We propose a scheme to generate a stable sonic black hole in a ring trap.

Absence of dc-conductivity in lambda-DNA.

Abstract: The electrical conductivity of biomaterials on a molecular scale is of fundamental interest in the life sciences. We perform first principles electronic structure calculations, which clearly indicate that lambda-DNA chains should present large resistance values. We also present two direct procedures to measure electrical currents through DNA molecules adsorbed on mica. The lower limit for the resistivity is 10(6) Omega . cm, in agreement with our calculations. We also show that low energy electron bombardment induces a rapid contamination and dramatically affects the measured conductivity, thus providing an explanation to recent reports of high DNA conductivity.

Evolution of the Jahn-Teller distortion of MnO6 octahedra in RMnO3 perovskites (R = Pr, Nd, Dy, Tb, Ho, Er, Y): a neutron diffraction study.

Abstract: Stoichiometric RMnO3 perovskites have been prepared in the widest range of R3+ ionic sizes, from PrMnO3 to ErMnO3. Soft-chemistry procedures have been employed; inert-atmosphere annealings were required to synthesize the materials with more basic R cations (R = Pr, Nd), in order to minimize the unwanted presence of Mn4+. On the contrary, annealings in O2 flow were necessary to stabilize the perovskite phases for the last terms of the series, HoMnO3, ErMnO3, and YMnO3, thus avoiding or minimizing the formation of competitive hexagonal phases with the same stoichiometry. The samples have been investigated at room temperature by high-resolution neutron powder diffraction to follow the evolution of the crystal structures along the series. The results are compared with reported data for LaMnO3. The distortion of the orthorhombic perovskite (space group Pbnm), characterized by the tilting angle of the MnO6 octahedra, progressively increases from Pr to Er due to simple steric factors. Additionally, all of the pe...