Stony Brook University

About: Stony Brook University is a education organization based out in Stony Brook, New York, United States. It is known for research contribution in the topics: Population & Poison control. The organization has 32534 authors who have published 68218 publications receiving 3035131 citations. The organization is also known as: State University of New York at Stony Brook & SUNY Stony Brook.

The Formulation and Atmospheric Simulation of the Community Atmosphere Model Version 3 (CAM3)

Abstract: A new version of the Community Atmosphere Model (CAM) has been developed and released to the climate community. CAM Version 3 (CAM3) is an atmospheric general circulation model that includes the Community Land Model (CLM3), an optional slab ocean model, and a thermodynamic sea ice model. The dynamics and physics in CAM3 have been changed substantially compared to implementations in previous versions. CAM3 includes options for Eulerian spectral, semi-Lagrangian, and finite-volume formulations of the dynamical equations. It supports coupled simulations using either finite-volume or Eulerian dynamics through an explicit set of adjustable parameters governing the model time step, cloud parameterizations, and condensation processes. The model includes major modifications to the parameterizations of moist processes, radiation processes, and aerosols. These changes have improved several aspects of the simulated climate, including more realistic tropical tropopause temperatures, boreal winter land surfac...

Completion Dissection or Observation for Sentinel-Node Metastasis in Melanoma

Abstract: BackgroundSentinel-lymph-node biopsy is associated with increased melanoma-specific survival (i.e., survival until death from melanoma) among patients with node-positive intermediate-thickness melanomas (1.2 to 3.5 mm). The value of completion lymph-node dissection for patients with sentinel-node metastases is not clear. MethodsIn an international trial, we randomly assigned patients with sentinel-node metastases detected by means of standard pathological assessment or a multimarker molecular assay to immediate completion lymph-node dissection (dissection group) or nodal observation with ultrasonography (observation group). The primary end point was melanoma-specific survival. Secondary end points included disease-free survival and the cumulative rate of nonsentinel-node metastasis. ResultsImmediate completion lymph-node dissection was not associated with increased melanoma-specific survival among 1934 patients with data that could be evaluated in an intention-to-treat analysis or among 1755 patients in t...

How Evolutionary Crystal Structure Prediction Works—and Why

Abstract: Once the crystal structure of a chemical substance is known, many properties can be predicted reliably and routinely. Therefore if researchers could predict the crystal structure of a material before it is synthesized, they could significantly accelerate the discovery of new materials. In addition, the ability to predict crystal structures at arbitrary conditions of pressure and temperature is invaluable for the study of matter at extreme conditions, where experiments are difficult.Crystal structure prediction (CSP), the problem of finding the most stable arrangement of atoms given only the chemical composition, has long remained a major unsolved scientific problem. Two problems are entangled here: search, the efficient exploration of the multidimensional energy landscape, and ranking, the correct calculation of relative energies. For organic crystals, which contain a few molecules in the unit cell, search can be quite simple as long as a researcher does not need to include many possible isomers or confor...

Phase and Angle Variables in Quantum Mechanics

Abstract: The quantum-mechanical description of phase and angle variables is reviewed, with emphasis on the proper mathematical description of these coordinates. The relations among the operators and state vectors under consideration are clarified in the context of the Heisenberg uncertainty relations. The familiar case of the azimuthal angle variable $\ensuremath{\phi}$ and its "conjugate" angular momentum ${L}_{z}$ is discussed. Various pitfalls associated with the periodicity problem are avoided by employing periodic variables ($sin\ensuremath{\phi}$ and $cos\ensuremath{\phi}$ to describe the phase variable. Well-defined uncertainty relations are derived and discussed. A detailed analysis of the three-dimensional harmonic oscillator excited in coherent states is given. A detailed analysis of the simple harmonic oscillator is given. The usual assumption that a (Hermitian) phase operator $\ensuremath{\varphi}$ (conjugate to the number operator $N$) exists is shown to be erroneous. However, cosine and sine operators $C$ and $S$ exist and are the appr\'opriate phase variables. A Poisson bracket argument using action-angle (rather $J$, $cos\ensuremath{\varphi}$, $sin\ensuremath{\varphi}$) variables is used to deduce $C$ and $S$. The spectra and eigenfunctions of these operators are investigated, along with the important "phase-difference" periodic variables. The properties of the oscillator variables in the various types of states are analyzed with special attention to the uncertainty relations and the transition to the classical limit. The utility of coherent states as a basis for the description of the evolution of the density matrix is emphasized. In this basis it is easy to identify the classical Liouville equation in action-angle variables along with quantum-mechanical "corrections." Mention is made of possible physical applications to superfluid systems.