Showing papers by "Swedish University of Agricultural Sciences published in 1995"

Litter decomposition, climate and liter quality.

Abstract: Litter decomposition is controlled by three main factors: climate, litter quality and the nature and abundance of the decomposing organisms. Climate is the dominant factor in areas subjected to unfavourable weather conditions, whereas litter quality largely prevails as the regulator under favourable conditions. Litter quality remains important until the late decomposition stages through its effects on humus formation. Interest in the role of litter decomposition in the global carbon cycle has increased recently since (1) increased atmospheric carbon dioxide will probably affect the chemical quality of litter (especially nitrogen content), and (2) global warming may enhance decomposition rates.

A developmental switch sufficient for flower initiation in diverse plants

Abstract: We have generated transgenic plants in which the flower-meristem-identity gene LEAFY of Arabidopsis is constitutively expressed. LEAFY is sufficient to determine floral fate in lateral shoot meristems of both Arabidopsis and the heterologous species aspen, with the consequence that flower development is induced precociously. Our results also suggest a new level of regulation during flower development, as indicated by the competence of the main shoot to respond to LEAFY activity.

Age and reproduction in birds — hypotheses and tests

Abstract: It is well known that reproductive performance improves with age in birds. Many hypotheses, involving factors such as differential survival, delayed breeding, breeding experience, foraging ability and reproductive effort, have been proposed to explain this pattern. Although these hypotheses are not mutually exclusive, they can be classified in three major groups relating to progressive appearance or disappearance of phenotypes, age-related improvements of competence, and optimization of reproductive effort. However, a closer examination of the literature reveals that only few studies have rigorously tested the hypotheses. Future work should focus on carefully designed tests that critically investigate the hypotheses.

Total dietary fiber determined as neutral sugar residues, uronic acid residues, and Klason lignin (the Uppsala method): collaborative study.

Abstract: A joint AOAC/American Association of Cereal Chemists (AACC) collaborative study was conducted to determine by the Uppsala method the dietary fiber content and its composition in various foods. The method includes preparation of a residue by treatment with thermostable alpha-amylase and amyloglucosidase and then ethanol precipitation of solubilized dietary fiber components while leaving low-molecular weight carbohydrates in solution. After acid hydrolysis of residue, neutral polysaccharide residues are determined as alditol acetates by gas-liquid chromatography, uronic acid residues are determined by colorimetry, and ash-free acid-insoluble residue (Klason lignin) is determined gravimetrically. Total dietary fiber, including enzyme-resistant starch, is calculated as the sum of nonstarch polysaccharide residues and Klason lignin. Nine laboratories completed the study, analyzing in duplicate 8 unknown dried products that included 4 cereal products, green peas, potato fiber, carrots, and apples. Total dietary fiber contents of products tested ranged from 4.6 to 84.3%, with an average RSDR value of 8.4% (range, 4.8-11.1%). Total neutral polysaccharide residues ranged from 3.8 to 64.1%, with an average RSDR value of 7.5% (range, 5.4-10.5%). Individual neutral sugars (rhamnose, arabinose, xylose, mannose, galactose, and glucose) and uronic acid residues present at more than 1% generally had good RSDR values (3.3-22.8%), whereas, as expected for Klason lignin, only the wheat bran sample with a high content (16%) had an excellent RSDR value (5.0%). The gas chromatographic-colorimetric-gravimetric method (Uppsala method) for determination of total dietary fiber (as neutral sugar residues, uronic acid residues, and Klason lignin) has been adopted first action by AOAC INTERNATIONAL.

Growth and shoot: Root ratio of seedlings in relation to nutrient availability

Abstract: The influence of mineral nutrient availability, light intensity and CO2 on growth and shoot:root ratio in young plants is reviewed. Special emphasis in this evaluation is given to data from laboratory experiments with small Betula pendula plants, in which the concept of steady-state nutrition has been applied.

Crystal structure of isopenicillin N synthase is the first from a new structural family of enzymes

Abstract: Penicillin antibiotics are all produced from fermentation-derived penicillins because their chemical synthesis is not commercially viable. The key step in penicillin biosynthesis, in which both the beta-lactam and thiazolidine rings of the nucleus are created, is mediated by isopenicillin N synthase (IPNS), which binds ferrous iron and uses dioxygen as a cosubstrate. In a unique enzymatic step, with no chemical precedent, IPNS catalyses the transfer of four hydrogen atoms from its tripeptide substrate to dioxygen forming, in a single reaction, the complete bicyclic nucleus of the penicillins. We now report the structure of IPNS complexed with manganese, which reveals the active site is unusually buried within a 'jelly-roll' motif and lined by hydrophobic residues, and suggest how this structure permits the process of penicillin formation. Sequence analyses indicate IPNS, 1-aminocyclopropane-1-carboxylic acid oxidase and many of the 2-oxo-acid-dependent oxygenases contain a conserved jelly-roll motif, forming a new structural family of enzymes.

Human urine - Chemical composition and fertilizer use efficiency

Abstract: Stored human urine had pH values of 8.9 and was composed of eight main ionic species (> 0.1 meq L−1), the cations Na, K, NH4, Ca and the anions, Cl, SO4, PO4 and HCO3. Nitrogen was mainly (> 90%) present as ammoniacal N, with ammonium bicarbonate being the dominant compound. Urea and urate decomposed during storage. Heavy metal concentrations in urine samples were low compared with other organic fertilizers, but copper, mercury, nickel and zinc were 10–500 times higher in urine than in precipitation and surface waters. In a pot experiment with15N labelled human urine, higher gaseous losses and lower crop uptake (barley) of urine N than of labelled ammonium nitrate were found. Phosphorus present in urine was utilized at a higher rate than soluble phosphate, showing that urine P is at least as available to crops as soluble P fertilizers.

Remote sensing and image analysis in plant pathology

Abstract: ABSTRACf Thi s paper reviews various applications of remote sensing and image anal ysis in plant path ology. It describes technical methods and their possibilities, but also emphasizes the biological prerequisites and restrictions of prac tical appli­ cations. The subject area comprises many nondestructive and noninvasive methods to detect and assess plant diseases and stress objectiv ely and cost-ef­ fectively, even though to date we cannot identify the specific cause of the damage. As a supplement to conventional methods , these new methods have great potential to facilitate and increase accuracy and precision in plant patho­ logical researc h.

Role of Abscisic Acid in Drought-Induced Freezing Tolerance, Cold Acclimation, and Accumulation of LT178 and RAB18 Proteins in Arabidopsis thaliana.

Abstract: To study the role of abscisic acid (ABA) in development of freezing tolerance of Arabidopsis thaliana, we exposed wild-type plants, the ABA-insensitive mutant abi1, and the ABA-deficient mutant aba-1 to low temperature (LT), exogenous ABA, and drought. Exposure of A. thaliana to drought stress resulted in a similar increase in freezing tolerance as achieved by ABA treatment or the initial stages of acclimation, suggesting overlapping responses to these environmental cues. ABA appears to be involved in both LT- and drought-induced freezing tolerance, since both ABA mutants were impaired in their responses to these stimuli. To correlate enhanced freezing tolerance with the presence of stress-specific proteins, we characterized the accumulation of RAB18 and LTI78 in two ecotypes, Landsberg erecta and Coimbra, and in the ABA mutants during stress response. LT- and drought-induced accumulation of RAB18 coincided with the increase in freezing tolerance and was blocked in the cold-acclimation-deficient ABA mutants. In contrast, LT178 accumulated in all genotypes in response to LT and drought and was always present when the plants were freezing tolerant. This suggests that development of freezing tolerance in A. thaliana requires ABA-controlled processes in addition to ABA-independent factors.

A Microscale Technique for Gas Chromatography-Mass Spectrometry Measurements of Picogram Amounts of Indole-3-Acetic Acid in Plant Tissues.

Abstract: A microscale technique has been developed for routine quantifications of picogram amounts of indole-3-acetic acid (IAA) in plant tissues by combined gas chromatography-mass spectrometry. Low- and high-resolution selected-ion-monitoring and selected-reaction-monitoring mass spectrometry techniques were compared for selectivity and precision. The best selectivity was obtained with selected-reaction-monitoring analysis, and 1-mg samples containing 500 fg of IAA could be analyzed accurately with this method. This technique was used to investigate the IAA distribution pattern along the longitudinal axis of tobacco (Nicotiana tabacum [L.]) leaves. In young, developing leaves an increase of endogenous IAA from the leaf tip to the base of the leaf was observed, whereas the level of IAA was uniform along this axis in mature leaves.

The tobacco homolog of mammalian calreticulin is present in protein complexes in vivo.

Abstract: The analysis of protein sorting signals responsible for the retention of reticuloplasmins (RPLs), a group of soluble proteins that reside in the lumen of the endoplasmic reticulum (ER), has revealed a structural similarity between mammalian and plant ER retention signals. We present evidence that the corresponding epitope is conserved in a vast family of soluble ER resident proteins. Microsequences of RPL60 and RPL90, two abundant members of this family, show high sequence similarity with mammalian calreticulin and endoplasmin. RPL60/calreticulin cofractionates and costains with the lumenal binding protein (BiP). Both proteins were detected in the nuclear envelope and the ER, and in mitotic cells in association with the spindle apparatus and the phragmoplast. Immunoprecipitation of proteins from in vivo-labeled cells demonstrated that RPL60/calreticulin is associated with other polypeptides in a stress- and ATP-dependent fashion. RPL60/calreticulin transcript levels increased rapidly in abundance during the proliferation of the secretory apparatus and the onset of hydrolase secretion in gibberellic acid-treated barley aleurone cells. This induction profile is identical to that of the well-characterized ER chaperones BiP and endoplasmin. However, expression patterns in response to different stress conditions as well as tissue-specific expression patterns indicate that these genes are differentially regulated and may not act in concert.

Storage and drying of wood fuel.

Abstract: Some of the available techniques for the storage and drying of various types of woody biomass, and how they affect dry matter loss, fuel quality and working environment are discussed. These include field trials of ventilated storage with arable coppice and logging residues and experiments testing the effect of particle size on the storage of wood fuel. The development of a mathematical model for describing the drying of wood chips in bulk, and experiments to validate the model are discussed. Results of storage trials of uncomminuted logging residues, in covered windrows or in bundles, from both fresh and summer-dried material, showed many advantages compared with chip storage. The risks of self-ignition and allergic reactions were eliminated and dry matter losses were minimal. Research conducted to identify and quantify the changes in feedstock composition due to method and length of storage is reported. A study investigating the frequently reported errors in the determination of dry matter loss during chip storage is discussed. A literature review and a database of studies on biomass fuel storage and drying are described.

Resolving genetic relationships with microsatellite markers: a parentage testing system for the swallow Hirundo rustica.

Abstract: Eight polymorphic microsatellite markers from the swallow were isolated and characterized. Extraordinary variability was revealed at the HrU6 locus with 45 different alleles scored among 46 unrelated individuals. The probability that the same genotype combination would occur in two random and unrelated individuals at six selected loci was as low as 1.3 x 10(-8) and the combined exclusion probability was 0.9996. Stable Mendelian inheritance was observed in about 1000 meioses. No significant linkage was revealed and for almost all combinations of marker-pairs, linkage closer than 5 cM could be excluded. At two loci, null (nonamplifying) alleles were encountered. Thirteen (30%) extra-pair offspring were identified in 5 (56%) broods when applying the marker set on a nearly complete swallow colony. We were able to identify a single male from the other families in the colony as the most likely father for nine of the 13 extra-pair offspring.

Nitrogen mineralization and potential nitrification at different depths in acid forest soils

Abstract: Soil samples were collected from the litter, humus and five mineral soil layers to a depth of 50 cm in acid, but highly productive, Norway spruce forests in S Sweden and E Denmark for determination of net N mineralization and potential nitrification. The samples were sieved while still fresh and incubated at a constant temperature (15°C) and soil moisture for 74–117 days with periodic subsamplings. Net N mineralization rates, expressed per g organic matter or per g of total N, decreased with increasing depth. Net N mineralization in the ten soils studied ranged from 35 to 105 kg N ha- yr-1, of which the organic horizons contributed 32–74%. Nitrate formation patterns were variable. Almost no nitrification could be detected at pH (H2O) values lower than 4.0. Nitrate was formed in humus layers with pH values of 4.0–4.5, but the nitrification was never complete. By contrast, the nitrification was almost complete at a depth of 10–50 cm, where the pH (H2O) was 4.1–4.5. Addition of CaCO3 stimulated nitrification in the humus layer, indicating the presence of acid-sensitive nitrifiers, while nitrification in the mineral soil was sometimes sthnulated and sometimes inhibited by the addition of CaCO3. Tests with the acetylene block method showed that nitrification, when it occurred, was autotrophic in the humus layer but less easy to characterize in the mineral soil. Thus, further studies are needed to characterize the nitrifier organisms and identify the factors regulating the activity of these organisms. Actual nitrification rates in the field could not be determined, but our findings showed that the B horizon in acid forest soils has a great potential for nitrification. Because N deposition does not appear to decrease in Scandinavian forests, we conclude that an ammonium surplus in the forest floor followed by a downward transport of ammonium to the nitrifying subsoil can increase the risk of nitrate leaching in the future.

Succiniclasticum ruminis gen. nov., sp. nov., a ruminal bacterium converting succinate to propionate as the sole energy-yielding mechanism.

Abstract: A gram-negative, anaerobic, nonmotile, non-spore-forming, rod-shaped bacterium that fermented succinate quantitatively to propionate was isolated from a high dilution of rumen ingesta obtained from a dairy cow fed a production diet containing grass silage as the main roughage source. This organism did not grow on any of the following energy sources: 12 carbohydrates, pyruvate, lactate, 7 dicarboxylic acids, aspartate, citrate, and trans-aconitate. Both rumen fluid and yeast extract were necessary for good growth on succinate. The organism was negative for the following characteristics: production of propionate from threonine, protein digestion, sulfide production, nitrate reduction, catalase activity, and urease activity. There was no growth at 22°C and reduced growth at 45°C compared with growth at 39°C. The DNA base composition was 52 mol% G+C. The complete 16S rRNA sequence (EMBL accession number, X81137) was obtained, and the phylogenetic relationships of the organism were determined. The most closely related genera were the genera Acidaminococcus and Phascolarctobacterium. The name proposed for this bacterium is Succiniclasticum ruminis gen. nov., sp. nov.; the type strain is strain SE10 (= DSM 9236). Additional isolation attempts revealed that S. ruminis is a common inhabitant of the rumina of cows that are fed production diets and of cows on pasture.

Comparison of rapeseed cultivars and resynthesized lines based on allozyme and RFLP markers.

Abstract: It has frequently been suggested to use the resynthesis of rapeseed (Brassica napus) from B. campestris and B. oleracea to broaden its genetic base. The objective of the present study is twofold: (1) to compare the genetic variation within resynthesized rapeseed with a world-wide collection of oilseed rape cultivars, and (2) to compare genetic distances estimated from RFLP markers with distances estimated from a relatively small number of allozyme markers. We investigated 17 resynthesized lines and 24 rapeseed cultivars. Genetic distances were estimated either based on the electrophoresis of seven allozymes, with a total of 38 different bands, or based on RFLP data of 51 probe/enzyme combinations, with a total of 355 different bands. The results of allozyme and RFLP analyses agreed reasonably well. Genetic distances, estimated from two independent sets of RFLP data with 25 and 26 probe/enzyme combinations respectively, were highly correlated; hence about 50 RFLP markers are sufficient to characterize rapeseed material with a large genetic diversity. The cultivars were clustered into three groups: (1) spring rapeseed of European and Northern American origin, (2) winter rapeseed of European and Northern American origin, and (3) rapeseed of Asian origin. Several of the resynthesized rapeseed lines were similar to European winter rapeseed cultivars, whereas others had quite unique patterns. It is concluded, that resynthesized rapeseed is a valuable source for broadening the genetic variation in present breeding material of Brassica napus. However, different lines differ widely in their suitability for this purpose.

Importance of arabinogalactan proteins for the development of somatic embryos of Norway spruce (Picea abies)

Abstract: The morphology of somatic embryos of Norway spruce (Picea abies) varies among different cell lines, from less developed somatic embryos with small embryonic regions (group B) to well developed embryos with large embryonic regions (group A). Only well developed somatic embryos will undergo a maturation process after a treatment with ABA and develop into mature somatic embryos, which is required for plant regeneration. We have previously shown that the presence of specific extracellular proteins can be correlated with the morphology of the somatic embryos. In the present study we show that extracellular proteins concentrated from group A cell lines can stimulate group B embryos to develop further and that seed extract can stably convert B embryos into A embryos. The arabinogalactan protein (AGP) fraction of the extracellular proteins and of the seed extract was shown to be an active component for stimulating B embryos to develop further. Furthermore, the amount and type of extracellular AGPs, as detected with β-glucosyl Yariv reagent and monoclonal antibodies, varied among different types of tissues and cell lines. The data show that development of somatic embryos in Norway spruce is associated with particular extracellular AGPs, which have a regulatory function.

Effects of flame weeding on weed species at different developmental stages.

Abstract: Summary Field experiments to investigate the efficacy of flame weeding were conducted in southern Sweden on a variety of natural weed flora at different developmental stages. The susceptibility of different species and stages was compared by modelling the dose–response with logistic models. Weed species with unprotected growing points and thin leaves such as Chenopodium album L., Stellaria media (L.) Vill. and Urtica urens L. were susceptible. When these plants had 0-4 true leaves, complete kill was achieved at propane doses of 20-50 kg ha-1. Species with protected growth points such as Capsella bursapastoris (L.) Medic and Chamomilla suaveolens (P.) Rydb. were tolerant due to regrowth after flaming, and they could be completely killed only in the early stages. Poa annua L. could not be completely killed with a single flame treatment, regardless of developmental stage or propane dose. Plant size had a major influence on the lethal dose requirement. Propane doses of 10-40 kg ha-1 were required to achieve 95% control of plant numbers for sensitive species with 0-4 true leaves, whilst plants with 4-12 leaves required 40-150 kg ha-1. When flaming naturally emerged weeds at early developmental stages, split applications of two half-dose treatments 1 week apart did not reduce plant numbers as effectively as a single late flame treatment with the same total dose.

Slow larval growth on a suboptimal willow results in high predation mortality in the leaf beetle Galerucella lineola.

Abstract: The slow growth/high mortality hypothesis predicts that herbivorous insects feeding on suboptimal host plants are subjected to higher predation mortality owing to the longer time spent in the vulnerable juvenile stages compared with conspecifics feeding on optimal plants. We tested this hypothesis for the willow-feeding leaf beetle Galerucella lineola raised on one suitable (Salix viminalis) and one unsuitable (S. dasyclados) willow species as well as on plants from an interspecific cross between the two species. Cohorts of larvae raised on caged plants (protected from enemies) and uncaged plants (exposed to enemies) were monitored daily throughout larval development in two consecutive years. Larvae raised on S. viminalis developed faster, grew larger and survived better than those raised on S. dasyclados. The suitability of the hybrid plants was intermediate to that of their parents. Our results strongly support the slow growth/high mortality hypothesis. In both years, total predation during the larval period was higher on S. dasyclados than on S. viminalis. Furthermore, the daily predation rate (i.e. the proportion of larvae preyed upon per day) was higher on S. dasyclados than on S. viminalis. When hybrid plants were included in the analysis total predation was positively correlated with both larval development time and daily predation rate. We suggest that high predation on beetles on low-quality plants is the combined result of their longer development time and elevated daily predation rate. The results are discussed in relation to the evolution of host plant selection and the paradox of sublethal plant defenses.

Extramatrical structures of hydrophobic and hydrophilic ectomycorrhizal fungi

Abstract: The extramatrical mycelia of Suillus bovinus, Rhizopogon luteolus and R. vinicolor, all examples of hydrophobic (ho), mat-forming mycorrhizal fungi, were examined while associated with their hosts in the unsterilized rhizoscope, and efforts were made to produce and examine similar structures in vitro. Comparisons were made with four hydrophilic (hi) mycorrhizal fungi, Thelephora terrestris, Cenococcum geophilum, Laccaria laccata and Hebeloma crustuliniforme. The ho fungi formed linear structures (coarse, rhizomorph-like cords, with vessels in the center) and fans, both in the rhizoscope and in vitro. The same was seen in mycorrhizal mycelia in forest soils. These cords did not themselves give rise to the fans peripherally, and were not proper rhizomorphs, but were created continuously from single exploring air hyphae in the preexisting fan. Thus the ho exploring hyphae aggregated into strands, which grew in thickness only when no suitable, exploitable substrate was found. The assembly of hyphae creating ho cords was seen in the air as well as on inert hydrophilic (glass) or hydrophobic (plastic) surfaces, but never in water. It is hypothesized that the ho cell wall surface glues hyphae together while cords are formed. Water disturbed strands and mantles already formed. The ho exploring hyphae could also create ho mycelial patches (as in a mat) at the water-air interface of a number of substrates. The periphery of these patches seemed to be composed of shorter exploiting hyphae penetrating different water-soaked substrates. Exploring, aerial hyphal tips of the ho fungi were shown to “excrete” water droplets from openings in the ho cell wall surface, both in vitro and in the rhizoscope. In the rhizoscope, droplet excretion was apparently directly governed by photosynthesis in the shoot of the seedling. It is proposed that the drop exudation represents a kidney-like function of the extramatrical hyphae and a bridge to drier soil particles to initiate nutrient uptake by the hyphae. The ecological function of the different extramatrical structures of ho fungi are discussed. The ho cords or hyphae may translocate water only in the vessels or symplastically and not in the cell walls. The ho property may be essential among the S-selected (stress-tolerant) factors in these forest fungi. The transfer from water-repelling exploring structures into more hi exploiting structures in water contact with surrounding soil debris is, therefore, of great importance. The hi fungi did not form rhizomorph-like strands, in most cases, but an extending hyphal mycelium, representing foraging, exploring and exploiting structures at the same time. In the field, short strands may be found. On the hi fungi droplets were also produced but readily fused into a water sheath around the hypha. The hyphae thus tended to wick water via the cell wall.

The effect of matrix on the occurrence of hazel grouse (Bonasa bonasia) in isolated habitat fragments.

Abstract: The aim of this study was to determine the effect of matrix on the occurrence of hazel grouse (Bonasa bonasia) in habitat fragments. The study was conducted in two kinds of landscape: (1) an agricultural landscape, where the censused forest habitat fragments were surrounded by farmland, and (2) in an intensively managed forested landscape, where the censused habitat fragments were surrounded by nonhabitat coniferous forest. Occupied and unoccupied habitat fragments in the agricultural landscape differed significantly in distance to the nearest suitable continuous habitat, with hazel grouse occurring only in habitat fragments closer than 100 m from continuous forest. In the intensively managed forest landscape, the effect of isolation was less evident, but there might be a threshold around 2 km. Effects of isolation occurred over much shorter distances when the surrounding habitats consisted of farmland than when it was forested habitats. The size of the habitat fragments was important in both landscapes, with larger habitat fragments more often containing hazel grouse.

Biodiversity and species redundancy among litter decomposers

Abstract: We discuss biodiversity in relation to ecosystem processes, particularly litter decomposition. Three hypotheses concerning the relations between organism groups, diversity and decomposition rates are proposed and tested against data from a two-year straw decomposition experiment. Barley straw mass loss and chemical composition, soil temperature and moisture, and the abundance of bacteria, fungi (total and FDA-active), protozoa, nematodes, microarthropods and enchytraeids were monitored.

Deciduous forest and resident birds: the problem of fragmentation within a coniferous forest landscape

Abstract: Six species of resident birds were censused in patches of deciduous forest within a coniferous forest landscape in south central Sweden. Here, the forests have been subjected to active forestry for ...