Institution
Swedish University of Agricultural Sciences
Education•Uppsala, Sweden•
About: Swedish University of Agricultural Sciences is a education organization based out in Uppsala, Sweden. It is known for research contribution in the topics: Population & Soil water. The organization has 13510 authors who have published 35241 publications receiving 1414458 citations. The organization is also known as: Sveriges Lantbruksuniversitet & SLU.
Topics: Population, Soil water, Species richness, Biodiversity, Picea abies
Papers published on a yearly basis
Papers
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TL;DR: It is shown that TAA1 catalyzes the formation of indole-3-pyruvic acid (IPA) from L-tryptophan (L-Trp), the first step in a previously proposed, but uncharacterized, auxin biosynthetic pathway, rapidly deployed to synthesize auxin at the high levels required to initiate the multiple changes in body plan associated with shade avoidance.
957 citations
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TL;DR: The authors used massively parallel sequencing to identify selective sweeps of favorable alleles and candidate mutations that have had a prominent role in the domestication of domestic chickens and their subsequent specialization into broiler (meat-producing) and layer (egg-consuming) chickens.
Abstract: Domestic animals are excellent models for genetic studies of phenotypic evolution They have evolved genetic adaptations to a new environment, the farm, and have been subjected to strong human-driven selection leading to remarkable phenotypic changes in morphology, physiology and behaviour Identifying the genetic changes underlying these developments provides new insight into general mechanisms by which genetic variation shapes phenotypic diversity Here we describe the use of massively parallel sequencing to identify selective sweeps of favourable alleles and candidate mutations that have had a prominent role in the domestication of chickens (Gallus gallus domesticus) and their subsequent specialization into broiler (meat-producing) and layer (egg-producing) chickens We have generated 445-fold coverage of the chicken genome using pools of genomic DNA representing eight different populations of domestic chickens as well as red jungle fowl (Gallus gallus), the major wild ancestor We report more than 7,000,000 single nucleotide polymorphisms, almost 1,300 deletions and a number of putative selective sweeps One of the most striking selective sweeps found in all domestic chickens occurred at the locus for thyroid stimulating hormone receptor (TSHR), which has a pivotal role in metabolic regulation and photoperiod control of reproduction in vertebrates Several of the selective sweeps detected in broilers overlapped genes associated with growth, appetite and metabolic regulation We found little evidence that selection for loss-of-function mutations had a prominent role in chicken domestication, but we detected two deletions in coding sequences that we suggest are functionally important This study has direct application to animal breeding and enhances the importance of the domestic chicken as a model organism for biomedical research
943 citations
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University of Antwerp1, Oregon State University2, Seconda Università degli Studi di Napoli3, Max Planck Society4, University of New Hampshire5, Tuscia University6, University of Edinburgh7, University of Oxford8, University of Liège9, Dresden University of Technology10, University College Dublin11, Institut national de la recherche agronomique12, Tulane University13, University of Minnesota14, Pennsylvania State University15, VU University Amsterdam16, University of California, Irvine17, Swedish University of Agricultural Sciences18, Oak Ridge National Laboratory19, United States Department of Agriculture20, Harvard University21, University of Helsinki22, Wageningen University and Research Centre23, Lund University24, Finnish Meteorological Institute25, University of Lisbon26, University of Milan27, National Institute of Advanced Industrial Science and Technology28
TL;DR: In this article, the authors present a comprehensive global database for forest ecosystems, which includes carbon budget variables (fluxes and stocks), ecosystem traits (e.g., leaf area index, age), as well as ancillary site information such as management regime, climate, and soil characteristics.
Abstract: Terrestrial ecosystems sequester 2.1 Pg of atmospheric carbon annually. A large amount of the terrestrial sink is realized by forests. However, considerable uncertainties remain regarding the fate of this carbon over both short and long timescales. Relevant data to address these uncertainties are being collected at many sites around the world, but syntheses of these data are still sparse. To facilitate future synthesis activities, we have assembled a comprehensive global database for forest ecosystems, which includes carbon budget variables (fluxes and stocks), ecosystem traits (e.g. leaf area index, age), as well as ancillary site information such as management regime, climate, and soil characteristics. This publicly available database can be used to quantify global, regional or biome-specific carbon budgets; to re-examine established relationships; to test emerging hypotheses about ecosystem functioning [e.g. a constant net ecosystem production (NEP) to gross primary production (GPP) ratio]; and as benchmarks for model evaluations. In this paper, we present the first analysis of this database. We discuss the climatic influences on GPP, net primary production (NPP) and NEP and present the CO2 balances for boreal, temperate, and tropical forest biomes based on micrometeorological, ecophysiological, and biometric flux and inventory estimates. Globally, GPP of forests benefited from higher temperatures and precipitation whereas NPP saturated above either a threshold of 1500 mm precipitation or a mean annual temperature of 10 degrees C. The global pattern in NEP was insensitive to climate and is hypothesized to be mainly determined by nonclimatic conditions such as successional stage, management, site history, and site disturbance. In all biomes, closing the CO2 balance required the introduction of substantial biome-specific closure terms. Nonclosure was taken as an indication that respiratory processes, advection, and non-CO2 carbon fluxes are not presently being adequately accounted for.
938 citations
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TL;DR: In this article, the authors evaluate when chronosequences may or may not be appropriate for studying community and ecosystem development, and they conclude that, when successional trajectories exceed the life span of investigators and the experimental and observational studies that they perform, temporal change can be successfully explored through the judicious use of chronosquences.
Abstract: Summary 1. Chronosequences and associated space-for-time substitutions are an important and often necessary tool for studying temporal dynamics of plant communities and soil development across multiple time-scales. However, they are often used inappropriately, leading to false conclusions about ecological patterns and processes, which has prompted recent strong criticism of the approach. Here, we evaluate when chronosequences may or may not be appropriate for studying community and ecosystem development. 2. Chronosequences are appropriate to study plant succession at decadal to millennial time-scales when there is evidence that sites of different ages are following the same trajectory. They can also be reliably used to study aspects of soil development that occur between temporally linked sites over time-scales of centuries to millennia, sometimes independently of their application to shorter-term plant and soil biological communities. 3. Some characteristics of changing plant and soil biological communities (e.g. species richness, plant cover, vegetation structure, soil organic matter accumulation) are more likely to be related in a predictable and temporally linear manner than are other characteristics (e.g. species composition and abundance) and are therefore more reliably studied using a chronosequence approach. 4. Chronosequences are most appropriate for studying communities that are following convergent successional trajectories and have low biodiversity, rapid species turnover and low frequency and severity of disturbance. Chronosequences are least suitable for studying successional trajectories that are divergent, species-rich, highly disturbed or arrested in time because then there are often major difficulties in determining temporal linkages between stages. 5. Synthesis. We conclude that, when successional trajectories exceed the life span of investigators and the experimental and observational studies that they perform, temporal change can be successfully explored through the judicious use of chronosequences.
931 citations
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TL;DR: Bacterial populations differ in abundance among individuals with different phenotypes of CD; specific species of bacteria are associated with ileal CD; further studies should investigate their role in pathogenesis.
924 citations
Authors
Showing all 13653 results
Name | H-index | Papers | Citations |
---|---|---|---|
Svante Pääbo | 147 | 407 | 84489 |
Lars Klareskog | 131 | 697 | 63281 |
Stephen Hillier | 129 | 1138 | 83831 |
Carol V. Robinson | 123 | 670 | 51896 |
Jun Yu | 121 | 1174 | 81186 |
Peter J. Anderson | 120 | 966 | 63635 |
David E. Clapham | 119 | 382 | 58360 |
Angela M. Gronenborn | 113 | 568 | 44800 |
David A. Wardle | 110 | 409 | 70547 |
Agneta Oskarsson | 106 | 766 | 40524 |
Jack S. Remington | 103 | 481 | 38006 |
Hans Ellegren | 102 | 349 | 39437 |
Per A. Peterson | 102 | 356 | 35788 |
Malcolm J. Bennett | 99 | 439 | 37207 |
Gunnar E. Carlsson | 98 | 466 | 32638 |