Swedish University of Agricultural Sciences

About: Swedish University of Agricultural Sciences is a education organization based out in Uppsala, Sweden. It is known for research contribution in the topics: Population & Soil water. The organization has 13510 authors who have published 35241 publications receiving 1414458 citations. The organization is also known as: Sveriges Lantbruksuniversitet & SLU.

Crystal structure of isopenicillin N synthase is the first from a new structural family of enzymes

Abstract: Penicillin antibiotics are all produced from fermentation-derived penicillins because their chemical synthesis is not commercially viable. The key step in penicillin biosynthesis, in which both the beta-lactam and thiazolidine rings of the nucleus are created, is mediated by isopenicillin N synthase (IPNS), which binds ferrous iron and uses dioxygen as a cosubstrate. In a unique enzymatic step, with no chemical precedent, IPNS catalyses the transfer of four hydrogen atoms from its tripeptide substrate to dioxygen forming, in a single reaction, the complete bicyclic nucleus of the penicillins. We now report the structure of IPNS complexed with manganese, which reveals the active site is unusually buried within a 'jelly-roll' motif and lined by hydrophobic residues, and suggest how this structure permits the process of penicillin formation. Sequence analyses indicate IPNS, 1-aminocyclopropane-1-carboxylic acid oxidase and many of the 2-oxo-acid-dependent oxygenases contain a conserved jelly-roll motif, forming a new structural family of enzymes.

Microbial biomass and activity in an agricultural soil with different organic matter contents

Abstract: Changes in soil fertility caused by various organic and N-fertilizer amendments were studied in a long-term field trial mostly cropped with cereals. Five treatments were included: (I) fallow, (II) cropping with no C or N addition, (III) cropping with N-fertilization (80 kg ha −1 yr−1), (IV) cropping with straw incorporation (1800kg Cha−1 yr−1) and N-fertilization (80 kg ha−1yr−1), and (V) cropping with addition of farmyard manure (80 kg N + 1800kg Cha−1yr−1). The treatments resulted in soil organic matter contents ranging from 4.3% (I) to 5.8% (V). Microbial biomass and activity were determined by chloroform fumigation, direct counting of fungi (fluorescein diacetate (FDA)-staining and Jones-Mollison agar-film technique) and bacteria (acridine orange staining), most probable number determinations of protozoa, esterase activity (total FDA hydrolysis) and respiration. Both biomass estimates and activity measurements showed a highly significant correlation with soil organic matter. Microbial biomass C ranged from 230 to 600 μg C g−1 dry wt soil, as determined by the fumigation technique, while conversions from direct counts gave a range from 380 to 2260 μg C. Mean hyphal diameters and mean bacterial cell volumes decreased with decreasing soil organic matter content.

Symbionts as major modulators of insect health: lactic Acid bacteria and honeybees.

Abstract: Lactic acid bacteria (LAB) are well recognized beneficial host-associated members of the microbiota of humans and animals. Yet LAB-associations of invertebrates have been poorly characterized and their functions remain obscure. Here we show that honeybees possess an abundant, diverse and ancient LAB microbiota in their honey crop with beneficial effects for bee health, defending them against microbial threats. Our studies of LAB in all extant honeybee species plus related apid bees reveal one of the largest collections of novel species from the genera Lactobacillus and Bifidobacterium ever discovered within a single insect and suggest a long (>80 mya) history of association. Bee associated microbiotas highlight Lactobacillus kunkeei as the dominant LAB member. Those showing potent antimicrobial properties are acquired by callow honey bee workers from nestmates and maintained within the crop in biofilms, though beekeeping management practices can negatively impact this microbiota. Prophylactic practices that enhance LAB, or supplementary feeding of LAB, may serve in integrated approaches to sustainable pollinator service provision. We anticipate this microbiota will become central to studies on honeybee health, including colony collapse disorder, and act as an exemplar case of insect-microbe symbiosis.

Soil organic matter quality interpreted thermodynamically

Abstract: Soil organic matter quality in the sense of how easily carbon in the soil organic matter can be mineralised is a major determinant of soil carbon storage and rate of mineralisation of nutrients. Its origin has so far remained elusive and a number of indices, such as C-to-N-ratio, lignin concentration and other combinations of chemical constituents have been used as substitutes for quality. We suggest here that quality is the number of enzymatic steps required to release as carbon dioxide a carbon atom from an organic compound . The larger the number of steps the lower is the quality of the carbon atom. Such a measure connects quality to thermodynamics. It also explains the rapid decrease in decomposition rate with decreasing quality suggested in the q-theory of organic matter dynamics and shows that the decomposition rate of low quality substrates has a stronger temperature dependence than that of high quality substrates.

Nucleotide sequence of the gene for a fibronectin-binding protein from Staphylococcus aureus: use of this peptide sequence in the synthesis of biologically active peptides

Abstract: Binding of cells of Staphylococcus aureus to fibronectin, which may represent a mechanism of host tissue adherence, involves a fibronectin-receptor protein present on the bacterial surface. Cloning of a gene coding for a staphylococcal fibronectin-binding protein and construction of a fusion protein with fibronectin-binding properties was previously reported from our laboratory. We have now sequenced the gene and deduced a primary sequence of the fibronectin-binding protein. The protein resembles other cell-wall-associated proteins on Gram-positive bacteria in that it (i) appears to be anchored in the cell membrane via its C-terminal end, (ii) contains a proline-rich repeating unit outside the membrane anchor, and (iii) contains a long (36-amino acid) signal sequence at the N terminus. The fibronectin-binding activity has been localized to a domain composed of a 38-amino acid unit repeated completely three times and partially a fourth time; the identity between the three 38-amino acid sequences varies from 42 to 87%. Three synthetic peptides mimicking the structure of each 38-amino acid unit were constructed. All three peptides interacted with fibronectin, as indicated by their ability to inhibit binding of fibronectin to staphylococcal cells, whereas an unrelated 37-amino acid peptide showed no inhibitory activity.